Cuculus canorus (common cuckoo): 104058694
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Entry
104058694 CDS
T08597
Symbol
SCARF1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104058694 (SCARF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104058694 (SCARF1)
Membrane trafficking [BR:
cuca04131
]
Endocytosis
Phagocytosis
Scavenger receptors
104058694 (SCARF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_2
EGF_PEAR1L
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
104058694
NCBI-ProteinID:
XP_053941093
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All DBs
Position
20:5525628..5533033
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AA seq
910 aa
AA seq
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MRSAWPILCLQLWLWVQSSAQELDPSGRNVCRLPAGPACCPGWKQEGRECTVALCEGEDA
CGADEVCVKPGLCLCKPGFFGADCNSPCPEQYWGPDCKRSCPCHPNGSCDPASGHCTCNP
DHWGELCQFPCQCGPRSRCDPLTGACRCEPGWWSPTCKKQCQCNPGSSQCYPLTGQCRCL
PGWWGRRCSFKCSCNLSPCAQETGKCECKAGFWGPACQRRCDCVHGSCSPVSGHCTCSPG
YQGRSCRDPCPAGKYGSQCVHSCGSCKLSQPCSPVDGFCLACQPGWNGTLCKEPCAPGFH
GEDCLQLCPRCRHGEVCDPETGFCTHCEPGWMGPSCNISCPTGTFGDGCQLLCPECVVGS
CDPVSGACICQEGYWGASCNDTCPEGYFGVNCSSPCQCSWGTCHPARGDCVLSLKDHGAL
AAAILIPLLLLLLCVACCCCGAGPADARDRAAVPDDDVLARMKHHVQGVLANLSAMMPCF
SLGGSKLPKVTVSHHDMEIPFNPSFIEPPSAAWVSDSSFSSFDTDNEGPEYSVPPREGIP
LLGGAELQDGASPPGEALPDPSAFDSEDVSQPFAIPRTSSIAKAKRPSVSFAEGTKFGAA
ETPSPGRKPKTPWGASKLSQPPGDMTAETPAERPASNCYESPEALGNGEESHRPSPRATP
GGRRRVVSGTRHVAQRVEALEAAAKSSSWEAKGKDPHVTTIYMMVGTAGQDPKSEGGGEG
PVQAVLKRLSSLQRGKWAGKEEPKVRRSIEAIQKEESKVRRSVEAIQEEAKVRRGIEAIQ
KQESKVRKSVEAIQKPPRRALAQCRDSVNSCKQRESVPGAPAEPTPGKHQHLPGKRQSFV
LASSSPRSTGAQDGASDAIGAMESGKTSESVFSLETKGQAAPEEEPKYENVMSSSADSPA
EEPTATPAAT
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgcctggcccatcctctgcctccagctgtggctgtgggtgcagagctctgcc
caggagctcgaccccagtggcaggaacgtctgcaggctccctgctggccccgcgtgctgc
cccggctggaagcaggaagggcgggagtgcacagttgcgctgtgcgagggggaggatgcc
tgtggggcagacgaggtgtgcgtgaaacctgggctttgcctctgcaaacccggcttcttt
ggagcagactgcaattccccctgccccgagcagtactggggccccgactgcaagcggagc
tgcccgtgccaccccaacgggagctgcgaccccgcgagtgggcactgcacctgcaacccc
gaccactggggagagctctgccagttcccctgccagtgcggcccccgcagccgctgcgac
cccctcaccggcgcctgccgctgcgagccgggctggtggtcacctacctgcaagaagcaa
tgccagtgtaaccccggcagctcccagtgctacccgctcaccggccaatgccgctgcctg
ccgggctggtggggcaggagatgcagcttcaaatgctcctgcaacctctcgccctgcgcc
caggagacgggcaagtgcgagtgcaaggctgggttttgggggccggcgtgccagcggcgc
tgcgactgcgtgcacggctcctgcagccccgtcagcgggcactgcacctgcagtcctggc
taccagggcaggagctgccgggatccctgtccggcggggaaatacggctctcaatgcgtg
cacagctgcgggagctgcaagctcagccagccctgctcacccgtggacggcttctgcctg
gcctgccagcccggctggaacgggaccctctgcaaggagccctgtgcgcccggcttccat
ggcgaggactgcctccagctgtgtcctcgctgccggcacggagaggtctgtgacccagaa
acagggttctgtacgcactgtgagcctggctggatgggacccagctgcaacatctcctgc
cccacgggcaccttcggcgacggatgccagctcctctgccccgagtgtgttgtggggagc
tgcgaccccgtgtccggagcgtgcatctgccaggagggctactggggagccagctgcaat
gacacctgcccggaggggtattttggagtgaactgttcctcaccttgccagtgttcctgg
gggacctgccaccctgcacggggtgactgcgtgttgagtcttaaggaccacggggctctt
gcagccgccatcctcatccctctcctgctgctgctgctctgcgtcgcctgctgctgctgc
ggagccggcccagcagatgctagagacagagcggccgtgccggatgatgatgttctggcc
aggatgaagcaccacgtgcagggggtgctggcgaacctcagcgctatgatgccttgcttt
tccttgggtggctccaaacttcccaaagtcacagtttcccaccatgacatggaaatcccc
ttcaatcccagcttcattgagccaccgtcagctgcgtgggtctcagacagctccttctcc
tccttcgacactgacaacgagggacccgagtactccgtcccacccagagaaggcatcccg
ctgctagggggggctgagctgcaggatggggcatccccccctggcgaggcgcttccagac
ccatctgcctttgactccgaggatgtctcacagccctttgccatcccgcgcacctccagc
attgccaaggccaagcggccctccgtgtcctttgctgaagggacaaaatttggggcagca
gagacccccagccctgggcggaagcccaagaccccttggggtgcatccaagctgtcccaa
ccaccaggggacatgacagctgagacccccgctgaacgaccagccagcaattgctacgag
agccccgaggccctcggcaacggcgaggaaagccaccggccgtcaccacgggccacccca
gggggacgccggagagtggtctctggcaccaggcacgtggcccagagagtggaggcgctt
gaagcggccgcaaaatccagcagttgggaggcgaaggggaaggacccccatgtcaccacc
atctacatgatggtgggaacggccgggcaagatcccaagtcagagggtggtggtgaagga
ccagttcaggctgtgctcaagaggctgagcagcttgcagaggggcaagtgggctggaaag
gaggagcccaaggtgagaaggagcatcgaggccatacagaaggaggaatctaaggtgaga
aggagtgttgaggccatccaagaggaagccaaggtgaggaggggcattgaagccatccag
aagcaggagtccaaggtgaggaagagtgttgaggccatacagaaaccaccccgacgggcc
ctggcacagtgcagagactcagtgaatagctgcaagcagagagagagtgtcccaggggct
cctgctgagccaacccctggcaagcaccagcatctccctgggaagagacagtcctttgtt
cttgcatcttcctcaccaagaagcaccggggcccaggatggagccagcgatgccataggc
gccatggagagcggcaaaacctctgagtcagtcttcagccttgaaacgaagggacaggct
gccccggaggaagagccaaaatacgagaacgtgatgagcagcagcgccgattcgcccgct
gaggagccgacggccacccccgcggccacctga
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