Cuculus canorus (common cuckoo): 104058763
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Entry
104058763 CDS
T08597
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104058763 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104058763 (PARN)
Enzymes [BR:
cuca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104058763 (PARN)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104058763 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
PTHB1_pf
Motif
Other DBs
NCBI-GeneID:
104058763
NCBI-ProteinID:
XP_053936287
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All DBs
Position
15:complement(17781841..17832594)
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AA seq
578 aa
AA seq
DB search
MDFLLFQFGLCTFKYDQTEEKYITKSFNFYIFPKPFNRSSPDVKFVCQSSSIDFLANQGF
DFNKVFRNGIPYLNQEEERQLREQYDEKSVLRPMGVGSLSYISPNATKCPVTVPDDQKKF
IDKVVEQIEDLLKNEEKESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ISKVNEEERRRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPWLLDTKLMASTQPFKEIINNTSLAELEKRLKEIPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKSHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTPGKRSMSPIQEETSSDDMEEGEGQDPEYNQTDLCAES
LPDGKKRAKKFKKIKTEHVPTGSLTTSSTGIFEVPETW
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggattttttgctctttcagtttggcctttgcacttttaaatatgatcaaacagaagaa
aagtatataacgaagtcatttaatttctatatttttccaaaaccatttaacagaagttct
ccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaaggattt
gattttaataaagtttttcgcaacggaattccatatttaaatcaggaggaagaaaggcag
ctaagggaacagtatgatgaaaaaagcgttctcaggccaatgggtgtaggatctctgtca
tacatttctcctaatgctacaaaatgtcctgtaacagttcctgacgatcagaaaaaattc
attgataaagtagtggaacagatagaagacttattaaagaatgaagaaaaagaaagtttg
gaactggagccatgtacaggatttcagaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccatgttgaaactcttgagtcagataagaaggagagatatattgtt
attagtaaggtaaatgaagaagaacgaagaagaagagaacagcagaaacaagcaaaagaa
caggaagagttgaatgatgcagtaggattttccagagtcgttcatgctattgctaattct
ggcaagcttgttattgggcacaatatgctactggatgttatgcataccatacaccagttt
tattgtcccctacctgatgacctaagtgagttcaaggaagtaacatcatgcgtctttccc
tggctattagatactaaactgatggcaagtacacaaccttttaaggagatcattaataat
acatcccttgcagaactggaaaagcgtttaaaagaaattccattcagccctcctaaagtt
gaaagtgcagaagggtttccaagttacgatacagcctctgaacaacttcacgaagcagga
tacgatgcttacattactggactgtgcttcatctccatggctaatttcctaggttcgttc
ctcagtcctccaaaaagtcacgtgtctgctagatcgaaactcattgaacctttttttaac
aagctgtttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagccaaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagtgac
ctttaccagcttttcagtgcctttggtaacattcaggtgtcgtggattgatgatacatca
gcatttgtgtcgttgagccagccagaacaagtacaaatagctgtaaacaccagcaagtat
gctgaaagttataggatccagacatatgcagaatatgttgagaaaaaacatgaagaaaaa
caggcaaagagaaaatgtacagaagatagttggaaggagatggagagaaagcggttaaaa
actcaatgcacaccttacgtttcccagagtcgatactactgtgttaacagttttacaggt
accagtacaccgggaaagagaagcatgagtcctatccaggaagaaactagttctgatgat
atggaggagggagaaggccaagatccagaatataatcagacagatttgtgtgcagagtca
cttccagatggtaagaagagagccaaaaagttcaaaaagataaagacggaacatgttcca
acgggaagcctcacaactagttccactggaatttttgaagtccctgaaacatggtag
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