Cuculus canorus (common cuckoo): 104058770
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Entry
104058770 CDS
T08597
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104058770 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cuca01001
]
104058770 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cuca04054
]
104058770 (CIITA)
Enzymes [BR:
cuca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104058770 (CIITA)
Protein kinases [BR:
cuca01001
]
Serine/threonine kinases: Other
TAF1 family
104058770 (CIITA)
Pattern recognition receptors [BR:
cuca04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104058770 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_9
LRR_8
LRR_14
NB-ARC
NPHP3_N
nSTAND_NTPase5
AAA
RsgA_GTPase
nSTAND3
AAA_16
AAA_22
UreE_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
104058770
NCBI-ProteinID:
XP_053936914
LinkDB
All DBs
Position
15:18353271..18393063
Genome browser
AA seq
1160 aa
AA seq
DB search
MLKEDVISKEYHQALLHEKDREDLARKISLTLMGKWDLSSDTIVPLSCLKLYGSKPQNVT
DNEPTGRQYISDSSRPIMDSAFVSESGFLDLLHSDIDTLHLYTLFDPKSSGNEEGNFSAD
PEVGTSNCDQPNSMDFLSMMENSENGDELYLSNNTVEAYAKIAGLAEYVLKDQQEKQVED
TFGNLILDEMAAENTEKFTDVKKCHKRSSAERCCEASEPKYMKIVEVPAASAGNGSFLAM
PLNTHPAGSASLTNQYVSFSVPATNMLERSFFIPGSSVPLIPECLLPLGMKGSQENTGFA
DPPQQILNFVTGNGTSDVIIYPGLEIFREVQVPVIPSGQPFKRPKPVEAFCTSLMDYFRD
ICKSVAVEREVTLDQLFIDGTLVQSQTEIKTGKNSIKVMEKEMATCSLQGREKVALKRSQ
IFQIPRGKELETKVIVVLGKAGMGKSVLVQKICQDWSNGEFSQFEFVFWFDCKQISSPEK
RYSLKDLLLEFFVKPQEGSKEIFEYILQNPGKVLLVFDGFDGLHGHENSPRCSASQPEKD
LCTIKELLSGLIQKKILTGCTLLLTARPKDKVYQHVSKVDKTVEIVGFSPQQRELYITKY
FEGLPYCDDALKLVKECEYLFSHCYSPVMCRFICFLCETVLEMGDKSLPSTLTKVFLKFV
EQKVPMQKDITAMQNRESLATLARIAWHLGEKHRSAIKSDLLPSKEVKEFALKYGFFLPF
AFPKHSDTERDEFGSTFSDFVIQNFLGVLHLMLAEEMKDKSLTKYLSFPSKKKKPYNWMD
LVPRFLAGLLFLQDDPYFCSISNVDVKQSTKKQKTLLKYIGRLQINEFCPERLLELLHCI
YETQNDDLFQHVTLKLKPDLSFLGIILTPPDVHVLHAVLKRSRKEFSLDLRNSSIDMQGL
KDLVGLKNVASFRASLGDTVTLWESLEQTQDYKLLKASTEKFVLDPFKAKTMKDISDLSD
LVEMQEKMINCMQDISGCSSCGIPAIKNLRKLEFALGPVCGLQGFLKLVEILAAFPSLQH
LDLDALSENGIGDEGAESLSEVFPTLTSLETLNLSQNKITDVGAEKLATALPSLSSLKTL
SLYNNSICDIGAENLAKVLPAMASLRVLDIQYNKITGVGAQQLTDSLRKCPHIKNLVMWN
PTIPYGVLEHLQQLDSRISV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaagaagatgtgatatccaaggagtaccatcaagctttgctccatgaaaaagac
agagaagaccttgcaaggaagatatctctgacacttatgggaaaatgggacctgtcctcg
gacaccatagttcctctatcttgtttaaaactctatggcagcaagcctcaaaatgtgaca
gataatgagccaacaggaagacagtacatttctgacagcagtagaccaatcatggattca
gcgtttgtgtctgaaagtggctttcttgatttgctgcacagtgatattgatacactacat
ctgtatactctctttgatcctaagtcatctggaaatgaagaaggtaacttctctgcagat
cctgaagttggtaccagcaactgtgatcagcccaatagtatggatttcctgtctatgatg
gaaaatagtgaaaatggggatgaactgtatctctccaacaacaccgtagaagcttatgct
aaaatagctggattagcagaatatgtgctcaaagatcagcaggagaagcaggtggaagac
acttttgggaaccttatattggatgaaatggctgctgaaaatactgagaaatttactgac
gtaaagaaatgtcacaaacgaagctctgcagagcgttgctgtgaagcgtcagaacccaaa
tacatgaaaattgtggaagtccctgccgcatctgcagggaatggcagtttcttagctatg
cctctcaacacccatccagctggctctgcctcactaactaaccagtatgtgtccttttct
gttcctgctaccaatatgctggaaagaagtttcttcattcctggatcttcagtgcctttg
attccagaatgtcttctacctcttggtatgaaagggagccaagagaatacaggctttgca
gatcctcctcagcagatacttaactttgttactggaaatggcacatctgatgttataata
tatccaggtttagaaatattcagagaagtccaagttcctgtaattccttctggacaaccg
ttcaaaagaccaaagccagtggaagctttctgtacatcacttatggattatttccgagac
atatgcaaatctgtggccgtggagcgtgaagtaactcttgatcagctatttattgatggg
acacttgttcaaagccaaactgaaatcaagacggggaagaatagcataaaagtaatggaa
aaggagatggcaacttgcagtctgcaagggagggaaaaggtagccctgaaaagaagccaa
atatttcaaatcccaagaggtaaagaattagagactaaagtgattgtggtgctgggaaaa
gcaggaatgggcaaaagcgttcttgttcagaagatctgccaggactggtccaatggagag
ttttctcagtttgaatttgtattttggtttgactgcaaacaaataagctcacctgagaag
cgatacagcttgaaggatctgcttcttgaattttttgtaaaacctcaagagggaagcaaa
gagatctttgagtatatattgcaaaatcctggtaaagtccttctggtttttgatggtttt
gatggattgcacggtcatgagaattctcctcgttgctcggccagccagcctgaaaaagac
ttgtgcactataaaggagcttctctcaggactcatccaaaaaaagatactaactggctgt
actttattacttacagcaagaccaaaagacaaggtgtaccagcatgtgtccaaagtggat
aaaactgttgaaatagtaggattttcccctcagcagagagaattgtacataaccaaatac
tttgagggattaccctactgtgatgatgcactgaaattagtcaaagagtgtgaatacttg
ttcagtcattgttacagccctgttatgtgtagattcatttgttttctctgtgagacagta
cttgaaatgggagacaaaagccttccttcaactcttactaaagtcttcctgaaatttgta
gagcaaaaggtacctatgcaaaaggatattacagccatgcaaaatcgagagagtcttgct
acactagcacgtatagcctggcatcttggagaaaagcaccgaagtgccataaaaagtgat
ctccttccttctaaggaagtcaaagagtttgctctgaaatatggattcttcctgccattt
gcattccccaaacattcagatactgaacgagatgaatttgggagcacattctctgatttt
gtcattcagaatttcttgggcgtgcttcaccttatgttagcagaagagatgaaggataaa
agtctaacaaagtacctgtcttttccatccaagaagaaaaaaccttataactggatggat
ttagtgcctcgatttttggctggattgttgttcctccaggatgacccctacttctgctcc
atttcaaatgtggatgtaaaacaatcaaccaagaagcagaaaacattattgaaatatatt
ggaaggctgcagataaatgagttctgtccagagaggttacttgagcttttacattgtatt
tatgaaacacaaaacgatgatctttttcagcatgtgaccttgaaactcaagccagacctg
tcttttctgggcataattcttacaccacctgatgtccatgtactgcatgctgttttaaaa
aggtcaagaaaagagttttccttggacttgcgaaacagcagcattgacatgcaagggctg
aaagacttggttggcctaaagaatgtggcatcgttcagggcctcccttggtgatacggtc
acgctctgggaatccttagaacaaacacaagactacaaactgctgaaagcatcgacagag
aaatttgttcttgacccctttaaggcaaagacaatgaaagatatcagtgacctttcagac
cttgtagagatgcaggagaagatgatcaattgcatgcaggatatatctggttgcagcagc
tgtggaattcctgccatcaaaaacctcagaaagctagaatttgcgctgggtccagtatgt
ggcctacagggattcctaaaactcgtggaaattcttgcagcatttccatcacttcagcat
ttagaccttgatgctctgagtgaaaatggcataggcgatgaaggagcagagagtctatct
gaagtctttccaaccctgacatcactggaaacattaaacttatcacagaataagataaca
gacgtgggtgcggagaagttagctacagctcttccttccttgtcttcattaaagacacta
agcttatacaacaacagcatttgtgatattggagcagaaaatcttgcaaaagttcttcct
gcaatggcatctttaagagtgctagatattcagtacaacaaaataactggtgttggagcc
cagcagctgactgacagcctaagaaaatgtccccacataaagaacttggtgatgtggaat
cccaccattccctatggagttcttgaacaccttcagcagctggactctaggatcagtgtg
tag
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integrated database retrieval system
