Cuculus canorus (common cuckoo): 104059321
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Entry
104059321 CDS
T08597
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03008
Ribosome biogenesis in eukaryotes
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104059321 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104059321 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104059321 (XRN2)
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104059321 (XRN2)
03009 Ribosome biogenesis [BR:
cuca03009
]
104059321 (XRN2)
03016 Transfer RNA biogenesis [BR:
cuca03016
]
104059321 (XRN2)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104059321 (XRN2)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104059321 (XRN2)
Ribosome biogenesis [BR:
cuca03009
]
Eukaryotic type
Pre-60S particles
RNases
104059321 (XRN2)
Transfer RNA biogenesis [BR:
cuca03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104059321 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104059321
NCBI-ProteinID:
XP_053918234
LinkDB
All DBs
Position
3:76125816..76179671
Genome browser
AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPVAEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRMKRDQPSFIPGGQFSPQALGNRSSPQAISNPRQAAFEMRMHDRQNSTTSPSPNTSF
TSDGSPSPAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQG
KLTLNENAVLPDQTVESPVPMLRDLTQNSAVSISFKDPQFDEDFVFKAVVLPGAKKPAPV
LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHTMPRERGMPGMYPNAVPLG
TYGSPYARPLLSPQQQIPKLLSNLRPQESWRGPTPLFQTTPQRTAGAAPLLAWNRMLQSQ
NQYQQNQFQGLGGPMGYPQRPEDRMDRGRQGYGPGRPYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggccttcttccgctggctcagccgcaagtacccctccatcatcgtcaac
tgcgtggaggagaaggctaaagagtgcaatggtgtcaaggctccaattgatacaagcaaa
cctaatccaaatgaggtggagttcgataacctgtatttggatatgaatggtataattcac
ccttgtacacatccagaagacaaaccagcgcctaaaaatgaagatgaaatgatggttgcg
atttttgagtatattgacaggatcttcaacatcgtaagaccaaggcggcttctttacatg
gctatagatggagtagctccacgtgcgaaaatgaatcaacagcggtcaagaagattcaga
gcatcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctg
gcaaaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaactgtatc
accccgggaactgagtttatggacaatcttgctaaatgcctccgctattacgttgctgac
cgtttgaacagtgacccagggtggaaaaatttgacagttattttgtctgatgctagtgct
cctggtgaaggtgaacataaaatcatggattacattagaaggcaaagagctcaaccaaac
catgatccaaacactcatcattgtctgtgtggggctgatgctgatttgattatgcttggg
ttagctacgcatgaaccaaactttactataatcagggaagagtttaaaccaaataaaccc
aagccatgtgctctttgtaaccagatgggtcatgaggttaaggattgccaaggcttgccc
agagaaaaacaaggcaagcatgatcagtttgcggatagtcttcctgtggctgaacaagaa
tttatcttcatcaggctatgtgtgttgcgagagtatttggaaagagagctcacaatggcc
agtttgccattcacttttgattttgaaagaagtgttgatgactgggtcttcatgtgcttc
tttgtgggaaacgactttcttcctcatctgccatctctggagatcagggagggagcaatt
gatcgcttggttaacatatataaaaatgtggtgcacaaaactggggggtacctcacagaa
agtggttttgtcaacctgcagcgggtccagatgatcatgttggctgttggagaagttgaa
gatagtattttcaaaaagagaaaagacgatgatgataactttaaaagacggcaaaaagag
aaaaggaaaagaatgaagagggatcagccttcttttattcctggtggacaattttcccct
caagctctgggaaatcgatctagtcctcaggcaatcagtaaccctagacaagctgccttt
gagatgaggatgcatgacagacagaattctacaacttcaccatctccaaataccagcttc
acttctgatggcagcccatccccagcaggaggaattaaacgaaaagctgaagatagtgac
agtgaacctgagccagaggataatatcaggttatgggaaaccggttggaaacagcgctac
tataaaaacaaatttgatgttgatgcatctgatgagaaattccgtcgtaaagttgtacag
tcctacgtagaagggctttgctgggttctcagatactattaccagggctgtgcatcctgg
aactggtattacccttttcactacgctccatttgcttccgactttgagggtattgcagac
atgccttcagattttgagaagggctcaaaaccgtttaagcctcttgagcaacttatggga
gtatttccagctgcaagtggaaattttctgccaccgacgtggaggaagctcatgacagat
ccggaatcaagcataatcgacttctaccctgaagattttgctattgatttaaatgggaag
aaatatgcttggcaaggtgttgcattattgccatttgttgacgagcgacgccttagagct
gctctggaagaagtctaccctgatctcactcctgaagaaagcagaagaaatagtcttggt
ggtgatgttctctttgttgggaaacatcatccactttgtgactttattgtagagcaatac
aagaccaaaaatacagagccagtggatatacccccagagctgtgccatggaatccaggga
aagcttacgctgaacgaaaatgctgttcttccagatcagacagtggagtctcctgttcca
atgctgcgtgatcttacacaaaattctgcagtcagtatctctttcaaagatccacaattt
gatgaagactttgttttcaaggctgtagtgttacctggtgcaaagaaacctgctcccgtc
ctgaagccaggagactgggaaaaaaccaacaatgatggtagaccttggagaccgcagctt
ggttttaaccgagacagaaaaccagtccatttggaccagtcagcgtttagaacattaggc
catacgatgccaagggaaagagggatgccaggaatgtatcccaacgcagtacctcttgga
acttatgggagtccatatgccaggccacttctgagtccgcagcagcagattcctaaactg
ttatcaaatcttagaccccaggagtcttggcgaggtcctacacccttgtttcagacgaca
ccacaaagaactgctggggctgctcctcttcttgcctggaaccgcatgctgcaatcccaa
aatcaataccagcaaaatcaattccaagggctgggcggaccaatgggttacccacagaga
cctgaagatcggatggacaggggaagacagggatatggccctgggaggccctacccgcta
ccacctccctcaggaagatacagctggaattag
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