Cuculus canorus (common cuckoo): 104059359
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Entry
104059359 CDS
T08597
Symbol
CHD6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cuca03036
]
104059359 (CHD6)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104059359 (CHD6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Chromo
Helicase_C
BRK
ResIII
HTH_Hrp3
DEAD
HDA2-3
MUN
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
104059359
NCBI-ProteinID:
XP_053937186
LinkDB
All DBs
Position
16:complement(1118918..1209784)
Genome browser
AA seq
2771 aa
AA seq
DB search
MGARRGRARAGPAVLAGRWAKLHRIIAARGRGAILELTFIPDLMIMKIQKKEKQPPSFAA
LSRSPMSDAWECKVQDPFGSGEEQEEVPHQATATGGQCQCPEQEPNAAPPKRTSSQNGMQ
DSGGGGTGVKKKRKKKDLGEQEGGEKAAVEVKPKRRREPKEPKEPKKAKEPKKPKEPKQR
EGTKKPRKPREPKTPKEPKDKKNGSESAPRARSRKSSKDTPVEKKKKGKRKNEIPVDSLD
LDQDLLSPSVQSPEESAESADSQKRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGAGRT
SALSASTLAWQAEEPPEDDANIIEKILASRMVQKETHPGGLAFEMEEFYVKYRNFSYLHC
KWATLEELEKDPRISQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRILEVAHTKDPD
TGEEVTHYLVKWCSLPYEESTWELEEDVDPGKIKEFEALQIPPEIKHTVTYPEERPASES
WQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL
MGIHGPFLIIAPLSTITNWEREFRTWTEMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLP
GIFKFQVVITTFEMILADCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLL
TGTPLQNSVEELFSLLNFLEPQQFPSETAFLEEFGDLKTEEQVKKLQSILKPMMLRRLKD
DVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGANQHNMPNLINTMMELRKCC
NHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLVF
SQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLG
INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL
GLDKAVLQDINRKGSTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQR
RTQTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTDAKNEKESLVI
DRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRFNEKTRRYLRAECFRVEKNLL
IFGWGRWKDILTHGRFKWHLNEKDMEMICRALLVYCVKHYKGDEKIKSFIWDLITPTKDG
QNQALQNHSGLSAPVPRGRKGKKTKNQMLLPEIKNADWLATCNPEVVLHDDSYKKHLKQH
CNKVLLRVRMLYYLKAEVLGEAADKAFEGTPARELDVLLPDIDYVEIPVDWWNAEADKSL
LIGVFKHGYERYNAMRADPALCFLEKVGMPDEKLLSAEQGVSDGTQDAAERGSMEKEESS
GEKLEGLPKQEDMVAAGAGEASEKRDEPAAAQDGSDSDRSCWPVSSALTARLRRLVTVYQ
RCNRKELPPRAEMLVPGNHGYWLQDEVFRRASEMDSVNKEMQKRWTRREQADFYRTVSSF
GVVYDQEKKIFDWTQFRAISRLEKKTDESLEKYFYSFVAMCKNVCGLPLWKEDGPLDADI
YVEPITEERAARTLYRIELLRKVREQVLKSPQLHERLKLCRPSLYLPVWWECGKHDRDLL
IGTAKHGLNRTDYYIMNDPQLSFLDAYRNYAQNKRTGLPGPETLCCLYQTNSKLYTSPLY
SQVDQPLQGDEPLENESESQVKLETADTTMSQAGGSPPDSSCETFMSKVRDLMSSNYDES
SLPESLVCMMYDEKACNSEQSSLARDSPSCTDVGSSVAKLSEGKLEGDEDPSSCDADTMR
DGLHGGCDRMDGQNEEAEPSTPESNPSQSIPAELGEALQQKGDLSSPAAALPEHSAMEGV
VTMGLYSPSLHNYEIKVAPEQRFIDLLQEKGIEAKSGPSQSHSEEDEEEEEDDDNSEAAE
EVVEGLSRPRSRACCDPEAHELGAEEQSSGLPTPENPCPEDMNSERGSVGLGTPEGLGEP
GPEGREDQGLDEESALQHSPGQAQSQAFGLPTALPGATGAEPPCAGAQAWDQGAEGQPSC
REALHPEPQGMKQEECEKRDDGEKTSSNQSLDGPDKYLEEESKSSASVLPGEIDDLQDAR
APTIAQLLQEKTLYSFSEWPKDRVIISRIDNICHAILKGKWPSSSQQFETQSLLAAPAVA
SNAGSRSSFAESEAPDPSFNNGVLISQEGFLTPAFAKDERKHRRPYEFEVERDAKQRSLE
HLAATHVHPPIVLNGWRDTAVDLSRASDGSQGNSSPFSLNTNMPKLGTMNTLQGSLGMDL
SGILQAGLIHPVTGQIVNGSIRRDDAAMRRRRGRRKNVEGMDLIFLKERPLPTRLQDVQE
DQLQPPQNSPVSDGPAAATSTSQPVPAAGSQAEKAVSNKSLLDWLRQQSDYTLDVSGFGT
NFSDKPKQRRQRCKDPSKLDISALTGEERVPVVHKGTGRRLGGATAPALKELPRWLDANL
EYAVAADWADIVKLSGYLPESKFNRILDEPVLRDTGPRRRGRRPRSELIKGPGIVADSPS
GMGPLFMNGLIAGMDLVGLQNMRNMQGIPLTGLVGFPAGFAAVPAGEDVKSTLSMLPMML
PGMATVPQMFGVGGLLNPPMATTCTATAPTSLTSTTKSGTASAEKATEDKQSSQEVKKET
LSEEKPGPSSFSNQTESAITTSSPVAFNPFLIPGMSPGLIYPSMFLSPGIGMALPGIQQT
RHSEAATLESQKRKRKKAKGELANPDPETVSPPEKKAANGQNCTEQTPPLPAEKEQDGPA
EEEREAARDTD
NT seq
8316 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgcggcgggggcgggcccgcgcggggccggctgtccttgcggggcgctgggcg
aaacttcaccgaataatagcggcgcgcggccgcggagccattttagaactaacattcatc
ccagatttgatgatcatgaaaatacagaaaaaagaaaagcagccgccaagcttcgcagcg
ctgagccgctccccaatgtcggatgcctgggagtgcaaggtgcaggacccctttggcagc
ggtgaggagcaggaggaggtgcctcaccaggcgacagccacgggcgggcagtgccagtgc
cccgagcaggagccgaatgcagctccccccaagcggacaagctcccagaacgggatgcag
gacagcgggggtgggggcacgggtgtgaagaagaaacggaagaaaaaggatctgggagag
caggaagggggagaaaaagcagcagtggaggtgaaaccaaagaggaggagagaacctaaa
gaaccaaaagagcctaaaaaggctaaagagcccaagaagccgaaggagcccaagcagagg
gaggggaccaagaagccccgaaaacctcgggaacccaaaacccccaaggagcctaaagac
aagaagaacggctctgagtctgcacccagagcgaggtccaggaagagcagcaaggacacc
cctgtggagaagaagaagaaagggaagaggaaaaatgagataccagtggacagtttggat
ttggatcaggatctcctgagcccatccgtacagagcccagaggagtctgcagagtcggcc
gacagccagaaacgccgctcgggacggcaggtgaagaggaggaagtacaacgaggacctg
gatttcaaggtggtggatgatgatggcgagacaatagctgtactgggagctgggcgaacc
tctgcactctccgcctctactctggcgtggcaggcagaggaacctcctgaggatgatgcc
aacatcattgagaagatcctggcctccaggatggttcagaaggagactcatcccggaggc
ctggcgtttgagatggaggagttttacgtcaagtacaggaacttctcctacctccactgt
aagtgggcaacccttgaggagctggagaaggaccccaggatctcccagaagataaagcgc
ttccgcaacaagcaggctcagatgaagcacatcttcacagagcctgatgaggatttgttc
aaccccgactatgtagaagtagatcgaattctggaggtggctcacacaaaggaccctgac
accggggaggaggtgacccactacctggtgaagtggtgctcgcttccctacgaggagagc
acctgggagctggaggaggatgttgacccagggaagattaaagagtttgaagccctccag
atccctccagaaatcaagcacacggtaacgtacccagaggagcgcccggcatccgagtcc
tggcagaaactggagaagtcccgggagtataagaacagcaaccagttgcgggagtatcag
ctggagggaatgaactggctgctctttaactggtataacaggaagaactgcatcctggct
gatgagatggggctggggaagacaatccagtcaatcaccttcctctcagaaatattcctg
atgggcatccacggccccttcctcatcatcgcacctctctccaccatcaccaactgggag
agggagttccgcacttggacagagatgaatgccatcgtgtaccacggcagccagatcagc
cggcagatgatccagcagtacgaaatggtgtacagggacgcacagggtaaccctctccct
gggatcttcaagttccaggtggttatcaccacctttgagatgattcttgctgactgccca
gagctgaagaagatccagtggcgctgcgtggtcattgatgaggcgcatcgcctgaagaac
aggaactgcaaactcctggaggggctgaagctcatggccttggagcacaaggtgctgctg
acagggactcccctgcagaactcggtggaggagctcttcagcctcctgaacttcctggag
ccacagcagttcccctcagagacagccttcctggaagagtttggagacctgaagacagag
gagcaggtgaagaagctgcagtccatcctaaagcccatgatgctgcgacggctgaaggat
gatgtagagaagaatctggcacccaagcaggagaccatcattgaggtggagctgaccaat
atccaaaagaaatactaccgggccatcctggaaaagaacttctctttcctctccaagggt
gccaaccagcacaatatgcccaacctcatcaacaccatgatggagctgcggaagtgctgc
aatcacccgtatctcattaatggggcagaggagaagattctggaagacttccgtaaaaca
cacagcccagaggcaccggacttccagctgcaggcgatgatccaggcagccgggaagctg
gtgctcattgataagctgcttcccaagctgattgccggtggacacaaggtgctcgtcttc
tcccagatggtgcgctgcctcgacatcctggaagactatctcattcagaggcggtacacc
tacgagcgcattgatgggcgagtgcgtgggaacctgcgccaagctgccattgaccgcttc
tgcaagcctgactcggatcgcttcgtatttctcttgtgcacgcgggcaggtgggctgggc
atcaacctcaccgctgcggacacctgcatcatcttcgattctgactggaacccacagaac
gacctccaggctcaagctcgctgccaccggatcgggcaaagcaaggcggtgaaggtctat
cgcctcatcaccaggaactcctacgagcgggagatgttcgacaaagccagcctgaagctg
ggcctagataaggctgtgctgcaggacatcaaccgcaagggcagcaccaatggggttcag
cagctctcaaagatggaggtggaggacctgctacggaagggtgcttatggagctctcatg
gatgaggaggacgaaggatcaaagttctgtgaggaagacattgatcagatcctccagcgc
aggacacagaccatcacgatccagtcagaggggaagggctctacatttgccaaggccagc
ttcgtagcttcaggaaacagaaccgacatttccttggatgaccccaacttctggcaaaag
tgggccaagatagcggagctcgataccgatgccaagaacgaaaaggagagcctggtcatt
gacaggccccgcgtgcggaagcaaaccaaacactacaactcctttgaagaggacgagctg
atggagttctccgagctggacagtgactcggacgagcgacccacacgctcacgacgcttc
aatgagaagacacggcggtacctgcgggctgagtgcttccgcgtggagaagaacctgctc
atatttggctggggacgctggaaagatatcctgacccatgggcggttcaaatggcacctg
aatgagaaggacatggagatgatttgtcgggccttgctggtctattgtgtcaaacactac
aagggggatgagaagataaagagttttatctgggatctcatcacaccgacaaaggacggc
cagaaccaggctctgcagaatcactcaggcctgtcagcgccggtgcccagagggaggaag
gggaagaagacgaagaaccagatgctgcttcctgagataaagaacgcggactggcttgcc
acctgcaaccccgaggttgtcctccacgacgacagctacaagaagcacctcaagcagcac
tgcaacaaggtgctgctgcgggtgcgaatgctctactacctgaaggctgaagtgctgggg
gaggccgcggacaaagccttcgaggggacccctgccagggagctggacgtgctgctgcca
gacattgactacgtggagatcccggtggactggtggaacgctgaagctgataaatctcta
ctcattggcgtcttcaagcacggttacgagcggtacaatgccatgcgggcggacccggcg
ctctgctttctggagaaggtgggcatgccggacgagaagctgctctccgcggagcagggc
gtcagcgatggcactcaggatgctgctgaaaggggcagcatggaaaaggaagagagcagt
ggagaaaagctggaggggctgccgaagcaggaggacatggtggctgctggagcgggcgaa
gccagtgagaagcgggacgagccagcggcagcccaggatggctccgactcagacagatcc
tgctggcctgtctcgtctgccctcacagccagactgcggaggctcgtcaccgtctaccag
cgctgcaaccgcaaagagctgcctccccgtgctgagatgctggtgcccggtaaccatgga
tactggctgcaggacgaggtgttcaggagagcctctgagatggactcagtgaacaaagaa
atgcagaaaaggtggaccaggagagagcaggcagatttctaccgcactgtctcctccttt
ggggttgtctatgaccaggagaaaaagatctttgactggacccagttccgagccatctct
cgactggagaagaagacagacgagagcctggagaagtacttctacagcttcgtggccatg
tgcaagaatgtctgtggtctcccgctgtggaaagaggatggtcccctagacgctgacatc
tacgtggagcccatcacagaggaacgtgccgccagaaccctttaccgtattgagctcctg
cgaaaagtgcgtgagcaggtgctcaagtctccacagctccacgagcggctcaagctctgc
cggccgagcctctacctgccggtttggtgggagtgtggcaaacacgatcgggacctgctg
atcggcaccgccaaacatggcctgaatcgcacagactactacatcatgaatgacccccag
ctgtcctttttagatgcctacaggaactatgctcagaataaaagaacggggctcccaggc
ccagaaacgctgtgctgcctttaccagactaactccaaactctacacttcccctctgtat
agccaggtggaccaaccgctgcagggggatgaacccctggagaatgaaagcgagagtcag
gtcaagctagaaactgcagacaccaccatgtcacaggctgggggcagccctccagactcc
agctgtgaaacattcatgtctaaagtccgggacctcatgtccagtaactatgatgaaagc
tctctgccagagtcgttggtgtgcatgatgtatgacgagaaggcctgtaacagcgagcag
agctctctcgctcgagacagcccgagttgcacagatgttgggagcagcgttgctaaactc
tctgagggcaagttagagggggatgaggacccatccagctgcgatgcggataccatgagg
gacggtttgcatgggggctgtgaccgaatggatggtcagaatgaggaggctgagccttca
actcctgaaagcaacccctcacaaagcatcccagcagagctcggcgaagccttgcagcag
aagggagacctcagcagccctgcggcagcgctgccagagcacagtgccatggaaggggtc
gtaaccatggggctttacagtcccagccttcataactatgaaataaaggttgctcctgag
cagaggttcatcgatctgctgcaggaaaaaggaatagaggcaaagtcgggaccaagtcag
agccacagtgaggaggatgaggaggaagaagaggacgatgataactctgaggcagcagaa
gaagttgtggaaggcttgagtcgtcccaggagcagggcttgttgtgatcctgaggctcat
gaactaggggctgaggagcagagctctggcctccccacaccagagaacccttgcccagaa
gacatgaatagcgagagagggtccgtggggctggggacacccgaagggctgggggagcct
gggccagagggcagggaggaccagggcctggatgaggagagcgccctgcaacactcgcca
ggccaggcccagagccaggctttcggcctgcccacagcactgccaggggccacaggggca
gagcccccctgtgctggggcacaggcctgggaccaaggggctgaggggcagccaagctgc
agagaggccctgcaccccgagccccagggcatgaagcaagaagagtgtgagaagagagac
gacggggagaaaaccagcagcaaccagagtctagatggtccagacaagtacttggaggag
gagagcaagagttctgcttctgtcctgcctggggagattgatgaccttcaggatgcccgg
gcgccaaccatagcccaactgctgcaggagaagacactttactccttctctgagtggcct
aaggaccgtgtcatcatcagccgcattgacaacatctgccatgccatcctgaagggcaag
tggccttcctccagccagcagtttgagacacagagcctgctggccgctccagcggtagcc
agcaatgccggcagcaggagcagctttgctgagtcagaagcgcctgatcccagcttcaat
aacggggtgttaatctcacaggaaggtttcctgacccctgcctttgcaaaggatgagcgg
aagcacaggaggccctacgaattcgaggtagagagagatgccaagcagagaagcctggag
cacctagcagcaacccacgtccatccacccattgtgctgaatggctggcgtgacacagcg
gtggacttgtccagagcctctgatggttcccaggggaactcttctcctttctccctcaac
acaaacatgcccaaactagggaccatgaacaccctccagggctccctgggcatggacttg
tccggcatcctccaggcggggttgatccatcctgtcacgggacagatcgtaaatggcagc
atccgaagagatgatgctgccatgcggaggagacgaggcaggagaaaaaatgtagaaggg
atggacctcatcttcttgaaggagaggcctcttccaaccaggctgcaggatgttcaggaa
gaccagctgcagcccccccagaacagtcccgtctctgatgggccggctgctgctacctca
acttcacagccagtcccagctgcaggcagccaagcagagaaggctgtctcgaataagagt
ctcctcgactggctccgtcagcagtccgactacacactcgacgtttctggctttggcaca
aatttttcagacaagcccaagcagaggaggcaacgctgcaaggaccccagcaaattggac
attagcgcgctgacaggagaggagcgagtgcctgtggtacataagggtaccggacggcgg
ttagggggagccacagcaccagcattgaaggaattgccaaggtggcttgatgcaaacttg
gagtatgctgttgcagctgactgggctgacattgttaagctttcaggctacttaccggaa
agcaaattcaatcgcatcctagacgagcctgtgctccgcgacacagggccccgacggagg
ggcaggaggccccgcagcgaactcattaaaggccccggcattgtagcagattctccttct
ggaatgggaccattgttcatgaacggactgattgctgggatggatctggtgggacttcag
aacatgagaaacatgcaagggatccctctgactgggctggttgggtttcctgctggattt
gcagcggtgcccgctggtgaggacgtgaaaagtaccctgagcatgttgcccatgatgctg
ccaggcatggccaccgtcccacagatgtttggcgttggaggacttctcaacccacccatg
gcaactacttgtactgcgactgctccaacttcgttaacaagcacaacgaaaagtggtaca
gccagcgcagagaaagctactgaggataaacagagcagccaggaggtgaaaaaagaaact
ctctcggaagagaagcctggtcctagttcattttctaatcagacagaatctgcaataact
accagtagtcctgtagcttttaacccgtttcttatcccagggatgtctcctggactgatc
tatccctcaatgttcctttcccctggcatcggcatggcactgcccggcattcagcaaacc
aggcactcggaggcagcgaccctggaaagccagaagcggaagagaaagaaagcaaaaggg
gagttggcaaacccagacccagaaactgtctcgccaccggaaaaaaaagctgcgaacggt
cagaactgtacagagcaaaccccgcctttgccggcagagaaggagcaggatggaccagca
gaggaggagcgtgaagcggctcgcgatactgattag
DBGET
integrated database retrieval system
