Cuculus canorus (common cuckoo): 104059814
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Entry
104059814 CDS
T08597
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03015
mRNA surveillance pathway
cuca04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104059814 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
104059814 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104059814 (SYMPK)
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104059814 (SYMPK)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104059814 (SYMPK)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104059814 (SYMPK)
U7-dependent histone pre-mRNA processing factors
104059814 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
104059814
NCBI-ProteinID:
XP_009559822
LinkDB
All DBs
Position
Unknown
AA seq
699 aa
AA seq
DB search
GLPVAIEATPRGTFTPSLSPPEAALGDDDEDKDLEAVAATAVPKTGGAAGVPSDIDITAE
FLQPLLTPENVANLVLISMVYLPEAMPASFQATYTPVESAGTEAQIKHLARLMATQMTAA
GLGPGVEQTKHLKEEPKEEKTAKPESVVIKRRLSALAQGQAISVLGSQGSATNLLEEEIP
QAKRRPEPIIPATQPRLVGAGGRKKVFRLSDVLKPLTDVQVEKLKLNAVTRILRAERAVA
CSGAAQARVKILAALVTRLEVPLKSEVLAFILEDVRSRLDLAFAWLFQEYNTYLSHLPGG
TLERYDECLIGLLGGLQEKPDQKDGVFSKLVLEAPLITESALEVIRKYCEDESRTYLGMS
TLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRQQALLFIKRMYEKEQLRDYVEKFALNYL
QLLVHPNPPSVLFGADKDTEVAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIA
DIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRV
RDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGASAV
SPLNPGELLIALHNIDSAKCDMKSIIKATNLCLAERNVYTSEVLAVVLQQLLEQSPLPVL
LMRTVIQGLSIYPRLGPFVINVLARLIMKQVWLSVCPSV
NT seq
2098 nt
NT seq
+upstream
nt +downstream
nt
ggcctcccagtggccatcgaggccactccacgtggaaccttcaccccatccctgtcccca
ccagaagctgcgctgggtgacgacgacgaagacaaagacctggaggcggtggcggcgacg
gccgtgccgaagacgggcggcgccgccggcgtcccctcggacatcgacatcaccgccgag
ttcttgcagccgctcctcacgccggagaacgtcgccaacctggtgctcatcagcatggtg
tacctccccgaggccatgcccgcctccttccaggccacctacacccccgtggagtcggcc
ggcaccgaggctcagatcaagcacctcgcgcgcctcatggccacccagatgacggcggca
gggttgggcccgggcgtggagcaaacgaagcacctgaaggaagaaccgaaggaggagaag
acggccaaaccggagagcgtggtcatcaagcgacggctgtcggcgctggcgcaaggccag
gccatctccgtgctgggctcccagggttcggccaccaacctccttgaggaggagatccct
caggccaaacggcgcccagaacccatcatcccggccacccaaccccggctggtgggcgct
ggtggccgcaagaaggttttccgtctcagcgatgtcctcaaacccttgaccgacgtccaa
gtggagaagctgaagctcaacgccgtcacccgcatccttcgtgccgaacgcgctgtcgcc
tgcagcggcgccgctcaggctcgcgtgaagatcctggcggcgctggtgacgcgcttggag
gtaccgctcaagagcgaagtgttggccttcatcttggaggacgtgcggtcgcgtttggac
ctggcttttgcgtggctcttccaagagtacaacacctacctgagccacctccccggtggc
accttggaacgctacgacgagtgtctcatcgggctcctcggtggcctccaggagaaaccc
gaccagaaggatggggttttctccaagctggtcttggaggcgccgctgatcacggagagc
gcgctggaggtcatccgcaagtactgcgaggacgagagccggacctacctgggaatgtcc
acgctgcgagacctcatcttcaagcggccgtcccggcagttccagtacctccacgtcctt
ctggacctcagctcccatgagaaggataaggttcgccagcaggcgctgctcttcatcaag
cggatgtacgagaaggagcaactgcgggactacgtggagaagttcgccctcaactacctg
cagctcctggtgcaccccaacccgccttccgtcctcttcggcgccgacaaggacacggag
gtggccgcgccgtggacggaggagaccatcaagcagtgcctctacctctacctcgctctt
ctgccccacaaccacaaactcatccacgagttggcgtccgtctacaccgaagccatcgcc
gacatcaaacgcaccgtcctgcgcgtcatcgagcagccgatccgtgggatggggatgaac
tctcctgagctcctactgctggtggagaactgccccaaaggtgctgagaccctggtgacg
cgttgccttcacagcctgacggacaaagtgccaccttcgccggagttggtgaagagggtc
cgtgacctctaccacaagcggttgccggatgtcaggttcctcatcccggtcctcaacggg
ttggagaagaaagaagtgatccaagcgctgcccaagctcatcaagctcaaccccatcgtg
gtcaaggaggtcttcaaccgcttgttggggacacaacatggtgacggtgcctcagccgtg
tcccccctgaaccccggggagctcctgatcgcgctgcacaacattgactcggccaagtgt
gacatgaagtccatcatcaaagccaccaacctgtgcctggcggagcgcaacgtgtacacg
tcggaggtgctggcggtggtgctgcagcagctgctggagcagagccctctgcccgtgctg
ctcatgcgcaccgtcatccagggcctctccatctacccccgcctcggacccttcgtcatc
aacgtcctcgcgcgcctcatcatgaagcaggtctggctgtctgtctgtccgtccgtct
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integrated database retrieval system
