Cuculus canorus (common cuckoo): 104059865
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Entry
104059865 CDS
T08597
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cuca03036
]
104059865 (CHD5)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
104059865 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104059865
NCBI-ProteinID:
XP_053941868
LinkDB
All DBs
Position
21:complement(3774225..3804291)
Genome browser
AA seq
2011 aa
AA seq
DB search
MSAMVGVVVGVSSGRDSQKSCGSGRGLGSGRGPTPPSWRGAARPAVAAPALGPLLAAMRG
PAAGRDLPEDAENEEDLSEEDDAVLEGLDEFFAEEQVAVQKKKKSKKLKDGKAAKIRRRK
KEGSNDEMSDNEEEIEEKSESEGSDYSPNKKKKKKLKEKKEKKPKRKKKDEDEDDTEDGC
LKEPKSSAQLMEEWSLDDVDYVFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTV
LGAKWREFSANNPFKGSSAAAAAAAIAAAVETVTIATPLAASPQPSALPAVIRKAKTKEG
KGPGVRKKIKGSKDGKKKGKGKKMAGLKFRFGGIPSKRKKGSSSEEEEREESDFDSASIN
SSSVRSECSAGLGKKGKRRRKKKRIEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHL
VCLDPELEKAPEGKWSCPHCEKEGIQWEPKEEEEEEEEGGEEEEDDHMEFCRVCKDGGEL
LCCDTCPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWAWKEPPATPLPPV
LPAPDAELALPPPKVLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKND
MDEPPAFDYGSGDEDSQREKRKNKDPQYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGD
IHYLIKWKDLPYDQCTWEIDEIDIPYYENLKQLYWNHRELMLGEDTCPLKKLNKKGKKLK
DEKLEKPPETPLVDPTVKFDKQPWYIDATGGTLHPYQLEGLNWLRFSWAQGTDTILADEM
GLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESR
SVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLLTSYELITIDQAVLGSIEWACLVVD
EAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE
FADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRN
FEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLM
LLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFN
APGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYR
FVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEG
MVSQGQRIGMPDAVTPFSDTLTTKGGAVTPSMKKKHGGTPPGDNKDVDDSSVIHYDDAAI
SKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYWEK
LLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDED
FEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMP
PQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLT
RIGVMSLVRKKVQEFEHVNGKYSTPDLILGGPESRKSIEIVSSDPTTPVPASPAHMHMGP
GGLADKPETQLGFQEEKDQAEQKSRKVSDSQVSAGAEKVESEEHPESCDSKEKPREEKQE
EREKAEPSPEPLVKDEGIQEKEKPLEKPELSSSLGKGEDREVKPEDAKVEEKEQSEAQQN
GDREDEEDGKKDDRNVNFRFMFNIADGGFTELHTLWQNEERAAISSGKIYDIWHRRHDYW
LLAGIVTHGYARWQDIQNDPRYVILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIE
EQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQ
LEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLATRGGDPALQQGSFGSSQIY
NNNFGPNFRGPGPGGIVNYSQMPLGPYVTDI
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgatggtgggcgtggtcgtgggcgtctctagtgggcgggactcccaaaagagc
tgcgggagtgggcgtggcctcgggagtgggcgtggcccgaccccgccatcttggcgcgga
gcggcgcgcccggcggtggcggccccggcgctggggccgctgctggccgcgatgcggggc
ccggcggccgggcgggacctgccggaggacgcggagaacgaggaggacctgtctgaagaa
gacgatgcggtactggaaggactggatgagtttttcgcggaagagcaagttgccgtgcag
aaaaaaaagaagtccaagaagctgaaagacggcaaagctgctaaaatcagaaggaggaag
aaagaggggagcaatgatgaaatgtcagacaacgaagaagagatcgaggaaaaatcggag
agtgaagggagcgactattcccccaacaaaaagaagaagaaaaaactgaaggaaaaaaag
gagaaaaagccaaaacggaagaagaaagatgaagacgaggatgacacggaggatgggtgt
ctaaaggagcccaagagctcggcccagttgatggaggaatggagcctcgatgacgtagat
tacgttttctcagaagaggattaccacacgctgacgaattacaaggccttcagccagttc
ctcaggcctctgatcgccaagaagaaccccaagatccccatgtccaagatgatgaccgtg
ctcggtgccaagtggcgagagttcagtgccaacaaccccttcaagggcagctcggcggca
gcggcggcggctgccattgctgcagctgtggagactgtcaccatcgccacgccgcttgcc
gccagcccccaaccgtcggccttgcctgctgtcatcaggaaggccaagaccaaggagggc
aagggtccaggcgtgcggaagaaaatcaaaggctccaaagacgggaagaaaaaggggaag
gggaaaaagatggcaggcttgaaattccggtttggaggaatccccagcaaaaggaaaaag
ggctcctctagcgaagaggaggaacgggaggaatccgacttcgacagtgccagcatcaac
agctcctcagtgcgctccgagtgctcggctggcctggggaagaaagggaagaggaggaga
aagaaaaagaggatcgaagaaggggacgggtacgagacggatcaccaggactactgcgag
gtgtgccagcagggaggggagatcatcctgtgcgacacctgcccgcgtgcctaccacctc
gtctgccttgaccccgagctggagaaggcccccgagggcaagtggagctgcccccactgc
gagaaggaaggcatccagtgggagccaaaggaggaggaggaggaggaagaagaaggtggc
gaggaggaagaggatgatcacatggagttctgccgggtctgtaaggacggaggggagctg
ctgtgctgtgatacctgcccgtcctcctaccacctccactgcctgaacccaccgctgccg
gaaataccaaacggtgaatggctctgccctcgctgtacatgccctcccttgaagggcaaa
gtccaacgcatcctgcactgggcctggaaagagcctccagccaccccgctcccgcccgtg
ctgcctgccccggacgcggagctggctcttccgccgccaaaggtgctggagggaatcccg
gagcgcgagttctttgtgaagtgggccggtctctcctactggcactgctcctgggttaag
gagctgcagctcgagctctaccacaccgtgatgtaccgcaactaccaacgcaagaacgac
atggatgagccgccggccttcgactacggctctggggacgaggacagccagagggagaag
cggaagaacaaagacccgcagtacgccaagatggaagagcggttctaccgctacggcatc
aagcctgagtggatgatgatccaccgcatcctgaaccacagcttcgataaaaagggagac
atccattacctgatcaagtggaaagacctgccgtacgaccaatgcacctgggagatcgac
gagatagacatcccgtactacgaaaacctcaaacagctctactggaaccacagggagctg
atgctgggggaggacacgtgcccgctgaagaagctgaacaagaaagggaaaaagctgaaa
gacgagaagcttgaaaagcctcccgaaacgcctctcgtggatcctacagtgaagtttgac
aagcagccgtggtacatcgacgccacgggaggcacgctccatccttaccagctggaaggg
ctgaactggctgaggttttcctgggcccaagggacggatacaatcctggctgatgagatg
gggctggggaagaccgtgcagacgattgtgttcttgtattccctgtacaaagagggccac
tccaaagggccgtatctggtcagcgcccctctctccaccatcatcaactgggagcgcgag
ttcgagatgtgggcacccgacttctatgtcgtgacctacacgggggacaaagaaagccgg
tccgtcatccgggaaaatgagttttcttttgaagacaacgctatccggagtggaaagaag
gtcttccggatgaagaaggaagcccagatcaagttccatgtcctgctcacctcctatgag
ctgatcactatcgaccaggcagtgctgggctccatcgagtgggcctgtctggtggtggat
gaagcacacaggttgaagaacaaccagtccaaattcttcagagtgttaaatagctacaag
atcgattacaaactgctgctcactgggactccgctccaaaacaacttggaagagctcttc
cacctgctcaatttcctgactccggagaggtttaataacctggaggggttcctggaggag
tttgcagacatctctaaggaggaccagatcaaaaagctccatgatttgctgggtccccac
atgctgcggcggctcaaggcggacgtgttcaagaacatgccagccaagacagaattgatc
gtgagagtggagctcagccagatgcagaagaagtactacaagttcatactgacgaggaat
tttgaagccctgaattcgaaaggtggtgggaaccaagtgtctctgctcaacatcatgatg
gacctgaagaagtgctgcaaccacccgtacctgttccccgtggcggcggtggaggcccca
gttctgcccaatggatcctacgatgggaattctttggtcaaatcttctgggaaactgatg
ttgctccagaagatgctgaagaagttacgagatgggggtcatagagttctcatcttctcc
cagatgacaaagatgctggacttgctggaggatttcctggagtacgaaggctacaagtac
gagcggatagacgggggcatcaccggcgggctgcgccaggaggccatcgacaggttcaat
gctcctggtgctcagcagttctgctttctcctctctacccgtgccggcggtctgggcata
aaccttgctacagctgacacagtcattatttatgattctgactggaatccccacaatgat
atccaggcttttagcagagctcaccgcatcgggcagaacaagaaggtgatgatctaccgc
tttgtgaccagagcctctgtcgaagagcgcatcacccaggtggccaaaaggaaaatgatg
ctcacccacctggtggtccgcccagggcttggctccaagtcaggctccatgaccaagcaa
gagctggatgacatcctcaagtttgggacagaagagctcttcaaggatgatgtggaaggc
atggtgtctcagggacagcggatcggcatgccggatgctgtcacccctttctctgacacg
ctgacaactaaagggggtgcagtgactcccagcatgaaaaagaagcacggtggcacccca
ccaggtgacaataaggatgtggatgacagcagcgtgatccactatgacgatgctgccatc
tctaagcttctggaccgaaaccaggacgcgactgatgacacggagctgcagaacatgaac
gagtatctcagctcctttaaagtggcccagtatgttgtgagagaagaggacggtgtggag
gaggtggaacgcgagatcatcaagcaagaggagaacgtggaccctgactactgggagaag
ctgctgcgccaccactatgaacagcagcaggaggatctggccaggaacttggggaaaggg
aagaggatccgcaagcaggtcaactacaacgacgcctcgcaggaggaccaagagtggcag
gacgagctctcggacaaccagtcggagtattccatcggctctgaggatgaggatgaagac
tttgaagagaggccagaaggtcagagtggccgaagacaatcccggaggcagctgaagagt
gaccgggacaagcctctccctcctttgctggcaagagttggggggaatatcgaggttctt
ggcttcaatgcccgccagcgcaaggctttcctgaacgccatcatgcgctggggaatgcca
ccccaggacgccttcaactcacactggctcgtccgggacctgcgtgggaagagcgagaag
gagttcagggcgtatgtctctctcttcatgaggcatttgtgcgaacctggagcagacggt
gccgaaacctttgcggacggcgttccccgggaagggctgtcccgccagcacgtgctgact
cggataggagtcatgtcactcgtaaggaagaaggtccaggagttcgagcatgtcaacggg
aagtacagcaccccagatctgattcttgggggcccggagagcaggaaatccatcgagatt
gtgtcttcggatcctactacccccgtgccggctagcccagcacatatgcacatggggccg
gggggcctcgctgacaaaccagaaacacaactcgggttccaggaggaaaaggaccaagcg
gagcagaaatccaggaaggtgtctgacagccaggtgtctgcgggtgctgagaaagtggaa
agtgaagagcacccagaaagctgtgacagcaaggagaaaccaagggaagagaagcaagag
gagagggaaaaggctgagccctctcctgaacccctagtgaaagatgaagggattcaagag
aaagagaagcctttggagaagccggagctgagcagcagcctggggaaaggggaggacaga
gaagtcaaaccagaggatgccaaggtggaggagaaggagcaaagcgaggctcagcaaaat
ggtgacagagaggatgaggaggatgggaagaaggatgacagaaatgtgaacttccgattc
atgttcaacatcgctgatggtggctttacagagctgcacacgctgtggcagaacgaggaa
agggctgccatctcctccggcaagatctacgacatctggcaccgccgacacgactactgg
ctcttggcaggaattgtgacccacggctacgcccgctggcaggacatccagaatgaccca
cgctacgtcatcctgaacgagcccttcaagtcagagatacacaaggggaactacctggag
atgaagaacaagttcctcgcccggcggttcaagttgctggaacaggccctggtgatcgag
gagcagctgcggagggctgcgtacctcaacatgacccaagaccccaatcacccggccatg
gcattgaacgctcgtctggctgaagtggagtgccttgccgagagccaccagcatctctcc
aaagagtccctggctgggaacaagcccgcgaatgccgtcctgcacaaggtgctgaaccag
cttgaggagctgctgagcgacatgaaagccgacgtgacgcgcctgccctccatgctgtcc
cgcatcccgcccgtggccgcccggctccagatgtccgagcgcagcatcctcagccgcctg
gccacccgcgggggggaccctgccctccagcagggctcctttggctcctcccagatctac
aacaacaactttgggccgaatttccgaggtcccggaccaggcgggattgtcaactacagt
cagatgcctctgggaccgtatgtgactgatatttag
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integrated database retrieval system
