Cuculus canorus (common cuckoo): 104060281
Help
Entry
104060281 CDS
T08597
Symbol
SOX13
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104060281 (SOX13)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
104060281 (SOX13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_WDHD1
HMG_box_2
CREPT
Motif
Other DBs
NCBI-GeneID:
104060281
NCBI-ProteinID:
XP_053943714
LinkDB
All DBs
Position
24:228157..273047
Genome browser
AA seq
611 aa
AA seq
DB search
MSMRSPVSPPLELDGAGNMVNCTIKTEEKKEGGYESPPGAAPSTKPHPNDPPGPPPKEGT
DPQALPQESCSPISDVLEPRRSAFEPAVSSQEKLDFNRNLKEVMPAIEKLLSSDWKERLL
GRNTAESKEVKGTQESLAEKELQLLVMINQLSTLRDQLLTAHSEQKNMAAMLFEKQQQQM
ELARQQQEQIAKQQQQLIQQQHKINLLQQQIQVNMPYVMIPAFTPSHQPLPVTPDSQLAL
PIQPIPCKPVDYPVQLLHSPPPPTLKRPAGSGHLQMQETSQPLNLTAKPKGSDLPSASSS
PSLKMSSCQSLTPSHGATRDLQTSPSNLPLGFLGEGDAITKAIQDARQLLHSHSGAIEAS
LSNPYRKDHVGIDSSPVKERMEETPAHRLDEAMLTCEMDGSRHFPESRNNNHIKRPMNAF
MVWAKDERRKILQAFPDMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDY
KYKPRPKRTCIVEGKRLRVGEYKALMRNRRQDARQGYLIGPQGSQMPPASSDVLYQRPVG
MQLTPPLMEHYLPRSMDPSMPVIVNTRSLKEGDGGGDDGHSVADGEMYRYSEEEDSEGED
KSDGELVVLTD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgaggagccctgtttctccccccctggagctcgatggagcgggcaacatggtg
aactgcaccatcaagacggaggagaagaaagagggtggctatgagtctccaccgggggct
gcccccagcaccaagccccatcccaatgacccaccggggccaccgccgaaggagggcacc
gacccccaggccctgccgcaggagtcctgctcgcccatcagtgatgtgctggagcccagg
cgctctgcctttgagccagctgtcagcagccaagagaagctggacttcaacaggaacttg
aaggaggtgatgccagccattgagaagttactgtccagtgactggaaagagcggctgctg
ggccgaaacactgccgagtccaaggaagtgaaaggaacccaggaaagcctggcagagaag
gagctccagttacttgtcatgatcaaccagctgtccacactgcgggaccagctcctgacg
gcccactcagaacagaagaacatggccgcgatgctgtttgagaagcagcagcagcagatg
gagctagcgcggcagcagcaagagcagatcgccaagcagcagcagcagctcatccagcag
cagcacaaaatcaacctcctgcagcaacagatccaggtcaacatgccctatgtcatgatc
cctgccttcacccccagccaccagcctctccccgtcactcctgactcccagttagcgctg
cccatccagcccatcccctgcaaaccagtggattacccggtgcagctgctgcacagcccc
cctcctcccacgctgaagagacctgctggctcaggccacctccagatgcaggagacctca
cagccactgaatctgacagccaaacccaaaggctctgacctccccagtgcctccagctca
cccagtttgaagatgagcagctgccagtccctcacaccgagtcacggggccaccagggac
ctgcagaccagcccgtccaatctgcctctggggttcctgggtgaaggcgatgccatcacc
aaagccatccaggatgcacggcagctgctgcacagccacagtggggccatagaggcatca
ctgagcaatccctaccgcaaggaccatgttgggattgattcttccccagtgaaggagcga
atggaggagacccctgctcaccggctggatgaggctatgttgacctgtgagatggatggc
tcacggcactttcctgagtccaggaacaacaaccacatcaagcggcccatgaacgccttc
atggtgtgggcaaaggatgagaggaggaagattttgcaggccttcccagacatgcacaac
tccagcatcagcaagatcttgggctcacggtggaagtccatgacaaaccaggagaagcag
ccctactacgaagagcaagcccgtctgagccggcaacacctggagaaatacccggactat
aaatacaagccccgacccaaacgcacctgcatcgtggaggggaagcgcctgcgtgtgggc
gagtacaaggcgctcatgaggaaccggcggcaggacgccaggcagggctacttgataggg
ccccagggcagccagatgccccctgcctcctcggatgtactgtaccagcggccagtgggc
atgcagctgaccccacccttgatggagcactacctgccccgcagcatggaccccagcatg
cccgtcatcgtcaacacgcgcagcctcaaggagggtgacggtggtggtgacgatgggcac
tcggtagctgatggtgagatgtaccgctatagtgaggaggaggactcggagggcgaggac
aagagtgatggcgagctggtggtgctgacggactaa
DBGET
integrated database retrieval system
