Cuculus canorus (common cuckoo): 104060318
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Entry
104060318 CDS
T08597
Symbol
CSTF3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104060318 (CSTF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104060318 (CSTF3)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104060318 (CSTF3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
104060318
NCBI-ProteinID:
XP_053925047
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Position
5:complement(33315173..33365494)
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AA seq
718 aa
AA seq
DB search
MSGEGPPGEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVA
QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK
EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP
MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP
QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQ
YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV
HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALME
YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE
KSGEIWARFLAFESNIGDLASILKVEKRRFTAFKEEYEGKETALLVDRYKFMDLYPCSAS
ELKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAP
PGLHPVPGGVFPVPPAAVVLMKLLPPPVCFQGPFVQVDELMEIFRRCKLPDTVDEAVRII
TGGLPEIAVEGNGPVENNAMLNKVVKRPHEDSDDDEEKGSVVPPVHDIYRARQQKRIR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagagggtccccccggcgagcaggctgctgagtatgtcccagaaaaagtgaag
aaagctgaaaagaaactagaagaaaatccatatgaccttgacgcttggagcattctcatt
cgagaggcacagaatcaacctatagacaaagcacggaagacctatgaacgccttgttgcc
cagttccccagttctggcagattctggaaactgtacattgaagcagagattaaagcaaaa
aattatgacaaagtggaaaagttatttcagcgatgccttatgaaggttttacatattgat
ttatggaaatgttacctttcctatgtacgagaaaccaaggggaagctacctagttacaaa
gaaaaaatggctcaggcatatgattttgctctggataagattggcatggaaatcatgtca
taccagatctgggtggattacatcaattttttgaagggcgtagaagcagtaggatcttat
gcagaaaaccagaggataacggctgtccgtagggtttaccagcgtggttgcgtgaatcca
atgataaacatagaacagctctggagagattataacaaatacgaagagggcatcaatatt
catttagctaagaagatgattgaagacaggagtagagattatatgaatgcccgacgtgtg
gcaaaggagtatgagactgtgatgaaaggtctggaccgcaatgcaccctctgttcccccc
caaaataccccacaagaggctcagcaggtagacatgtggaagaaatacatccagtgggaa
aagagtaatcctctccgtacagaagatcaaactctcataacaaaaagagttatgtttgct
tatgagcaatgccttttggttctgggacatcacccagatatctggtatgaagctgcacag
taccttgagcaatctagtaaactgctagctgaaaaaggggacatgaacaatgctaaactt
ttcagtgatgaggctgctaatatttatgaaagagcgatcagcactttattaaagaagaat
atgcttctttattttgcatatgcagattatgaagagagtcgaatgaagtatgagaaagta
cacagcatatataaccgtctcctggctattgaagacatcgatcctactctggtttatatc
caatacatgaaatttgcaaggcgagcagaaggcataaaatctggaagaatgatatttaag
aaagccagagaagatacccggacccgacatcatgtctatgttacagcagctttaatggag
tattattgtagtaaggataagtctgtggcctttaaaatttttgagctagggctgaaaaaa
tatggggacattccagaatatgtgctggcatatatcgactacctttctcatcttaatgag
gacaataacacaagagttttgtttgaacgtgttttaacttcagggagccttccacctgag
aaatctggggaaatctgggctcggtttttggcttttgagagtaacattggtgacctagct
agtatactgaaggttgaaaaacggaggtttacggcattcaaagaagaatatgagggtaaa
gaaacagctctgctggtagacaggtataagttcatggatttgtacccatgctctgcgagt
gaactgaaggcccttggttataaggatgtctcccgtgccaagctggcagctataattcca
gaccctgtggttgcaccttccattgtgcctgttctcaaagacgaagtagacagaaaaccg
gaatatccaaaaccggacactcaacaaatgattccatttcagccaagacatttagcacct
ccaggtttacatcctgtcccaggtggtgtatttcctgttccaccagcagctgtagttctc
atgaagctcctgccacctcctgtttgttttcagggtccctttgttcaagtggatgagctc
atggagatatttagaagatgcaaactgccagacactgttgatgaagctgtacggataatt
actggaggcctacctgaaatagctgtggaaggcaacggacctgtggaaaacaacgctatg
ctcaacaaggttgttaagagaccacatgaagattctgacgatgatgaggagaaaggatcc
gtagttccccctgtgcacgacatttacagagcaagacagcaaaagagaatccggtga
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