KEGG   Cuculus canorus (common cuckoo): 104060334
Entry
104060334         CDS       T08597                                 
Symbol
TAF5L
Name
(RefSeq) LOW QUALITY PROTEIN: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cuca  Cuculus canorus (common cuckoo)
Pathway
cuca03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cuca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    104060334 (TAF5L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cuca03021]
    104060334 (TAF5L)
   03036 Chromosome and associated proteins [BR:cuca03036]
    104060334 (TAF5L)
Transcription machinery [BR:cuca03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     104060334 (TAF5L)
   Coactivators
    SAGA/TFTC/STAGA complex
     104060334 (TAF5L)
Chromosome and associated proteins [BR:cuca03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     104060334 (TAF5L)
    STAGA complex
     104060334 (TAF5L)
    TFTC complex
     104060334 (TAF5L)
    SAGA complex
     104060334 (TAF5L)
    SLIK complex
     104060334 (TAF5L)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd TFIID_NTD2 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_WDR19_1st WD40_RFWD3 PEP5_VPS11_N PROPPIN Ge1_WD40 WD_LRWD1 eIF2A Nbas_N
Other DBs
NCBI-GeneID: 104060334
NCBI-ProteinID: XP_053917334
LinkDB
Position
3:60641288..60663162
AA seq 603 aa
MKRVRTEQIQMAVSCYLKRRQYVDSEGPLKQGLRLCQTAEEMAANLTVQSESGCANVVSA
APCLAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTMTIQDILSNLKLRAFLDNKYVIRLQEDSYNYLLRYLQ
SDNNNALCKVLTLHIHLDVQPAKRTDYQLYAGGSSSRNETNGLEPSDVPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISPNSKLLAAGFDNSCVKLWSLRSR
KLKSEPHLVDVSRIRLACDILDEEVWIPFXPPPTLSAEEEEDDSAGTEMKILRGHCGPVY
STRFLSDSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPCSLYFASGSHDR
TARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTG
HRGPVLALAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIA
SASMDNSVRVWDIRNTYCNAPADGSSSELVGVYTGQMNNVLSVQFMACNLLLVTGIAQEN
QEH
NT seq 1812 nt   +upstreamnt  +downstreamnt
atgaaacgcgtacgcacagaacagattcagatggcagtgtcctgctacctcaagcgccgt
cagtatgtggactcagaaggtcccctaaaacaagggctgaggctgtgtcagactgctgaa
gagatggcagctaatctcacagtccaatctgaatctggttgtgccaacgttgtgtctgca
gctccctgcctggcggagccacagcaatatgaagtacaatttggacgattacgcaatttt
ctcacagattcagattctcagcacagccatgaagtgatgcctcttctgtatcccctcttc
gtctacctccatctgaacatggtccagaatggcctaaaaagcacagtggatagtttttat
agccgcttccatggcatgttcttgcagaatgccagccagaaggatatcattgagcagttg
cagactaccatgactattcaagatatcctgtccaacttgaagctccgggcttttctggac
aacaagtacgtcatccgccttcaagaggacagctacaactaccttcttcgctacctccaa
agtgacaacaacaacgccctgtgcaaagtcctgaccttgcacattcacctggatgtgcag
cccgccaagaggactgactaccagctctatgccggtgggagctcctcacgcaacgagacc
aatggcctggaacccagtgatgtgccagcttccattctgcagaatgaggcagcgctggat
ttactgcaggacagcattaaacgtgtcaaggatgggcccccttcattaacgaccatctgt
ttctatgccttctataacacagagcagttgctgaatactgcagagatttcaccaaacagc
aagctgctcgctgctgggttcgataattcctgtgtgaagctgtggagcctgcgttccagg
aagttaaaatctgagccccacctcgttgatgtgtcccgcatccgcctggcttgtgacatc
ctggatgaggaggtctggataccattcnnccccccccctaccctttctgccgaggaggaa
gaggacgacagcgcaggcacagaaatgaagatcctgagaggacactgtggacctgtgtat
agcacaaggttcctttcagacagttcaggactcctatcttgttctgaggacatgtccatc
agatactgggacctcggaagttttacaaacactgtgttgtaccaaggacatgcctatcct
gtctgggatttggatattagcccctgcagcctgtactttgccagcggttcccatgatcgc
actgcaaggctctggtcgtttgatcggacgtacccgctgcgaatatatgcaggccatttg
gcggacgtagactgtgtcaagttccaccccaattccaactacttagcaacaggctccaca
gacaaaactgtgcgcttgtggagcactcagcaaggcaactcggtgcgtcttttcaccggg
caccgtggccctgtgctagcacttgcgttttctcccaacggtaagtacctggcatcagca
ggcgaagaccagcggctaaagctgtgggacttggcttcaggaactctttacaaagaactg
agggggcacacggacaacataaccagccttacttttagccccgacagtagtttaattgct
tcagcatccatggacaattcggtccgggtgtgggacatacggaacacttactgcaatgcc
cctgcagatgggtcttccagtgaactggttggtgtatataccggacaaatgaataatgta
ctgagcgtacagtttatggcctgtaatcttcttctagtgactggaattgcacaagaaaat
caggaacattaa

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