Cuculus canorus (common cuckoo): 104060343
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Entry
104060343 CDS
T08597
Symbol
TARBP1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cuca03016
]
104060343 (TARBP1)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104060343 (TARBP1)
Enzymes [BR:
cuca01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
104060343 (TARBP1)
Transfer RNA biogenesis [BR:
cuca03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
104060343 (TARBP1)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104060343 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
104060343
NCBI-ProteinID:
XP_053918398
LinkDB
All DBs
Position
3:complement(62471286..62512138)
Genome browser
AA seq
1578 aa
AA seq
DB search
MEGVLADALLAGCGDPCALLRAVCAPLSAERVEALRLLLQRLASGGLRPPGEPEALRRAA
WELALERCRPLLCGGEAEGSAERLRVSRAARGALRHCVQLCGAPLAARLARDALAELAVG
GGAGAEAAVEALAAAAPLLEEPELAERCAAAALALVREEGEGEAAAALAAGRLLPALGGN
AEALRRVWEGLLGAGGAAPRALLALSALSDAVLPRGPGAAGLDARLSPRFWRAVQGGLTE
RDALCRKRARFLLQRALDASGHGARLRCPTDGGDDPSLFWWCVEKNEKLVQFWETYILIM
ETLEGNQIHVIKPVLPKLNSLYELAISEEKGCWLFHPSWHMCIYKRMFESENKTLTKEGI
LHFLELYEKKHLPNPLGFSEFIIGPLMDALSESSLYGRTPGQLVGACPPLGMRLQKFLAT
YLMLLPEEEKGSFLLKFIQKMTSRHWCAVPILFLSMALAYIPACKILGTEGLHALRDVLQ
CTMITHQILLRGAAQCYLLQTAMHLTVVEKVSLSEMSSFLLSLRPEESLRRDTMLWMELC
RWFQVNDGCFRKSVTSEFEHQEPTTLCQYVRSLVGEYLKTPASERENCFMPDWFEAKLVA
TMILLAADVEQMRNECSGKSNIEWIELEAFLNPLLDVLMKLGSNAYIPTLKTDKSLQLLL
KLLQTRSLKCSNTQDDEVLFFIWKSLMTAVESVLEFILRRLTTDELSTVGDLDRCDLYLA
LIPEIVNLCLQVNWKKMPSIKNFIVSLTNASIRNLKERNCEEEPKLKEQIKKVASMASLG
AVCEIMDRKPEVHLESLPSVDALKRFISFSQFNEVLKKPSYFEEKSSLCEETTSQGWGKI
VACYVRDQWICLHFVLNSFPTLAQEYEETSERSLSPVERARKILESALEALTILPSDQVL
PVFNCMKVLVPKLLDSAESLCIEAFDLAWKIISSLSNTQLIFWSNLKAFVQFVFDTEVLA
VAASAKGQAYAKIKEIIFKLIDMSTTKTGVFNVVLSHCCKSWIFTTVEEGSALTNAFLNA
GSYCELITEACVFGTVFRRDQRLIQDVHAFVENLGEKCAANIVTESTNRDDHYIRVCAIK
FLCLLDGSNILHKTFMEDIFIKLLDKDELVSRSRTRYYANSLQHRIKNRVWQTLLVLLPK
LDQNFLCGTLDKVFQAGFANNQASVKYIIEWIIILSLHKYPQFINKFWDCFCYGEEKLKT
SICTFLSVLLHFDIVLQNTSEKKPALKKALTVVLQWCFNHNFSVRLYALVALKKIWGMCR
MLQVEEFEALTSVIESSLQQVENMHGTGNAGRNWQRIQDHFFFATFHPIEDYSLETIFYT
LPRLSELAEDEWISLSKFDRFTDIPLPLAFQWYRSRTELRDLKPSDWSQQDIGSNSAETD
GQTEWTDVQKKIIPWKNSTPSLDLEMVFQDRAAKLGKSNSRLIVVASLIDKPTNLGGLCR
TSEIFGVSALVVGSLHYIQDKQFQHLSVSAEQWLPLVEVKPSQLVDYLQQKKTEGYTIIG
VEQTAKSFDLTEYCFPEKSLLLLGNEHEGIPANLIHHLDVCVEIPQQGIIRSLNVHVSGA
LLIWEYTRQQVIKQKQQK
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atggagggtgtgctggccgatgcgctactggccggctgcggggacccctgcgcgctgctg
cgggccgtctgcgcgccgctctccgccgagcgcgtggaggcgctgcgcctcctcctgcag
cgcctggcgtcgggcgggctgaggccgccgggcgagcccgaggcgctgcggagggcggcg
tgggagctggcgctggagcggtgccggccgctgctctgcgggggggaggcggaggggagc
gcggagcggctgcgggtgtcgcgggcggcgcggggcgcgctgcggcactgcgtgcagctg
tgcggggcgccgctggccgcgcggctggcgcgcgacgccctggcggagctggcggtgggc
ggcggggcgggcgcggaggcggcggtggaggcgctggcggcggcggcgccgctgctggag
gagccggagctggcggagcgctgcgcggcggcggcgctggcgctggtgcgcgaggaaggc
gaaggcgaagcggcggcggcgctggcggccgggcggctgctgccggcgctggggggcaac
gcagaggcgctgcggcgtgtgtgggagggtctgctgggcgcggggggggcggcgccgcgg
gcgctgctggcgctgagcgcgctgtcagacgcggtgctgccgcggggccccggcgcggcc
gggctggacgccaggctgagcccgcggttctggcgggcggtgcagggcgggctgaccgag
cgggacgcgctgtgccgcaagcgggcgcggttcctgctgcagagagcgctggatgccagc
gggcacggagcgcggctgcgctgccccacggatggcggagacgaccccagtctcttctgg
tggtgcgtggagaagaatgagaagctcgtgcagttttgggaaacttacattttgatcatg
gaaactttggaaggaaaccagatccatgtcataaagccagtattgccaaaactaaacagt
ttgtatgagcttgcgatatcggaggaaaaaggttgttggttgtttcacccatcatggcac
atgtgcatttataaacggatgtttgagagtgagaataaaacattgacaaaggaaggcatt
cttcattttctggagctttatgaaaaaaagcatcttccaaatccgcttggtttttcagag
tttattattggaccattaatggatgccctctcagaaagttccctctatggcaggacacca
ggtcagctagtaggagcctgtcctcctttgggaatgaggctacagaagtttttggctact
tatctcatgcttcttccagaggaagaaaaaggtagtttcctgttaaaatttattcagaag
atgacaagtaggcattggtgtgctgttcccattttgtttctttctatggctctggcatat
atccctgcctgtaaaatactgggcactgaaggacttcatgctttaagagatgtccttcag
tgtactatgattacacatcagattttgttacgtggagctgctcagtgctatcttcttcaa
acagctatgcatttgacagttgtggagaaagtgtctctctcagaaatgtcaagctttctt
ctgtcccttagaccagaggagtctttacggagagatactatgttatggatggagctttgc
aggtggttccaagtgaatgatggatgcttcagaaagtctgtaacctctgagtttgaacat
caagagccaacaacactgtgtcagtatgtccgcagtcttgtgggggaataccttaagacg
ccagcatctgaaagagaaaattgctttatgcctgactggtttgaagctaagcttgtcgct
acaatgattctgttggccgcagatgtggagcagatgaggaatgaatgcagtggaaaaagc
aacatagaatggattgaactagaggctttcttgaaccctcttctggatgtcttgatgaaa
cttggcagtaatgcttacataccaacactgaaaacagataaaagcctacagcttctcttg
aagttattgcagactcgttcattaaaatgttccaatacacaagatgatgaggtgttgttt
tttatctggaaatctctaatgacagctgtggagagtgttcttgaatttattctccgacgg
cttactacagatgaattaagcactgttggtgatctggatcgttgtgatctatacttagcc
ttaattccagaaatagtgaatttatgcttgcaagtcaactggaagaaaatgccatctatc
aagaatttcattgtgtccctgacaaatgcatctattcgtaatcttaaggagagaaattgt
gaagaggagccgaagcttaaagaacagattaaaaaagtagctagcatggcttcacttgga
gcagtttgtgagataatggatcggaaacctgaagtgcaccttgaatctctgccttctgtg
gatgctctgaagagatttatttccttttctcaattcaatgaagtattaaagaagccatct
tactttgaagaaaaaagtagcttatgcgaagaaacaacatctcagggatgggggaaaatt
gttgcgtgctatgttcgtgaccagtggatttgccttcatttcgttttaaattcatttcca
acactggctcaagagtatgaagaaacttcagagaggtcattatctccagttgaaagggca
agaaaaattctggagtctgcattagaagccttaactattctgccttccgaccaagtttta
cctgtgttcaactgcatgaaagtccttgttcccaagcttctagactcagcggagtctctc
tgcatagaagcatttgatttggcgtggaaaattatatcatctttgagcaacacacagcta
atattttggtccaatctaaaagcttttgttcagtttgtctttgatactgaggttctagct
gttgctgcgagtgcaaagggtcaagcgtatgccaaaataaaagagataattttcaagctc
atagatatgtccactacaaagactggagttttcaatgtagtccttagtcattgttgtaaa
tcttggatatttactactgttgaggagggaagtgccttgacaaatgctttcctaaatgct
ggaagttattgtgaacttatcactgaggcttgtgtctttggaactgtgtttaggagagat
caaagacttatccaggatgttcatgccttcgtagaaaatcttggagaaaaatgtgcagcg
aatattgttacagaaagtaccaatagagatgatcactacattcgagtctgtgctattaaa
tttctgtgcttgttggatggatcaaatatcttacataagacgtttatggaagacattttc
atcaaactacttgataaagatgaactggtatccagatctagaactcgctattatgcaaac
tctttacagcatagaattaaaaatcgggtatggcagacactattagttcttcttccaaag
cttgaccagaattttttgtgtggaacccttgacaaagtttttcaggctggatttgctaac
aatcaagcatctgtgaaatatatcatagaatggattattatcttgagtctacataaatac
ccccaattcattaataaattctgggactgcttttgttatggtgaagaaaagcttaaaaca
agcatctgcacgtttttgtcagtgttattacactttgacattgttcttcaaaatacctca
gaaaagaagccagctttgaagaaagccctcacagttgttctacagtggtgtttcaaccat
aattttagtgttcgactttatgcgttagttgcccttaaaaaaatctggggtatgtgcaga
atgttgcaagtggaagaatttgaagctctgacatcagttattgaatctagccttcaacaa
gtggaaaacatgcatggcacggggaatgctggaaggaactggcagcgaattcaagatcat
ttcttctttgcaacgtttcatccaattgaggattacagtctagagacaatattttacact
cttcctcgcctttcggagcttgctgaagatgagtggatttcactctctaagtttgacaga
ttcactgacattcctttgccactggcgtttcagtggtatcgttctcgaacggaacttcgt
gatctgaaaccaagcgactggtctcagcaagacataggttcaaattcagctgaaacagat
ggccagacagaatggactgatgttcagaagaagattataccttggaaaaacagtactcct
agtttagacctggaaatggtatttcaggatcgtgctgctaaactgggtaaatcgaacagc
agactgattgtggtggcttcactgatcgataaacctaccaatttaggaggtttatgtcgt
acaagcgaaatatttggggtgtctgcactagttgttggcagtcttcattatatacaggac
aagcagtttcagcatcttagtgtttctgcagagcagtggctcccccttgttgaggtgaaa
ccatctcagcttgttgattatttacagcagaaaaaaacagaaggctacactattattggt
gtggagcagacagctaaaagttttgatcttacagaatactgctttccagagaagtcactg
ttgttgctgggaaatgaacatgaaggaatcccagcaaacctgattcaccacctggatgtc
tgtgtggaaattcctcagcagggtattattcgatcactcaatgttcatgtaagtggcgct
ctgctgatttgggaatacacaaggcagcaagtgatcaagcagaaacaacaaaaataa
DBGET
integrated database retrieval system
