Cuculus canorus (common cuckoo): 104060574
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Entry
104060574 CDS
T08597
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03013
Nucleocytoplasmic transport
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104060574
03015 mRNA surveillance pathway
104060574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104060574
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104060574
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
104060574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
104060574
NCBI-ProteinID:
XP_053941880
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All DBs
Position
21:6603532..6615305
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AA seq
479 aa
AA seq
DB search
MATDSWALAVDEQEAAAESLSSLNLKDEKPKPDANGAVIKADDNVEKTEDEEKEDRAAQS
LLNKLIRSNLVDTTNQVEVLQRDPTSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
NALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPGNKYPQCLCLSPTYELALQTGK
VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
LDEADVMIATQGHQDQSIRIQRMLPRDCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE
EETLDTIKQYYVLCNNRDEKFQALCNIYGAITIAQAMIFCHTRKTAGWLAAELSKEGHQV
ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
ETYLHRIGRTGRFGKRGLAINMVDSKHSMNILNRIQEHFNKKINKLDTDDLDEIEKIAN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgactcctgggccctggccgtggacgagcaggaggcggcggccgagtcgctg
agcagtttaaacctgaaggatgaaaaacccaaaccagatgccaacggtgctgtcatcaag
gcagatgacaacgtcgagaagacagaagatgaggagaaggaggacagagctgcgcagtcc
ctgctgaacaagctgatccgcagcaacttggttgacacaacgaatcaagtggaggtgctg
cagagggatcccacatcgccactctactctgtgaagtcttttgaggagctgcggctgaaa
ccacagctcctgcaaggagtctacgccatgggcttcaacagaccatctaagatacaagag
aatgccctgcccatgatgcttgctgaacccccacagaatttgattgcacaatctcagtcg
ggtactggcaagacagctgcctttgtcctggccatgctcagtcgcgttgaacctggaaac
aagtatccacagtgtctgtgcctttccccaacgtatgagctggcacttcaaacaggaaaa
gtgattgaacagatgggaaagttttatccagagctgaaacttgcgtatgctgtccgaggc
aacaaattggagagagggcagaagatctccgagcagattgtaattggcacacctggcact
gtgctggactggtgttccaaactgaagtttatagatcccaagaaaatcaaagtattcgtc
ttagatgaggctgatgtgatgatagcgacccagggccatcaggaccagagcattcgcatt
cagagaatgctccccagggactgccagatgcttctgttttctgccacttttgaggattct
gtgtggaagtttgctcaaaaagttgttcctgacccaaatgttatcaaactgaagcgagag
gaggagacactggacactattaagcagtattacgttctgtgcaataacagagatgagaag
ttccaggcgctctgcaatatctatggtgccatcaccattgcccaggccatgatcttctgc
catactcggaagacggccggctggctggcggctgagctctccaaggagggccatcaggtg
gcattgctgagcggggaaatgatggtggagcagagagctgctgtgatcgagcgcttccga
gagggcaaggagaaggtgctggtgacaaccaacgtctgtgccagagggattgacgtcgag
caggtctctgttgttatcaatttcgatctccctgtggataaagatggaaatccagataac
gagacctatctgcaccgaatcgggcgtacaggtcgcttcggcaagcgtggactggctatc
aacatggtggacagcaagcacagcatgaatattctcaacagaatccaggagcatttcaac
aaaaagataaacaaattggatacagacgacttggatgaaattgagaagattgcaaactga
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