Cuculus canorus (common cuckoo): 104060721
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Entry
104060721 CDS
T08597
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104060721 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104060721 (MSH6)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104060721 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
104060721
NCBI-ProteinID:
XP_053918442
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All DBs
Position
3:71286176..71304632
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AA seq
1339 aa
AA seq
DB search
MSRQSTLLRFFPKASPRAAAPAPAPAQSRTGPCSRRGPPEERNGRQEAGGGGGAAAEASS
VSCKCSPGDVVWAKMEGYPWWPCLVYNHPTERTIFRGKGKTARVHVQFFDDSPTRGWVSV
KYVKPYKGSSDAETLKGGMFYSTKPEIKRAMVLADDAMSKDVTKRLELAVCCEPSDTEEE
EEEEEEMEQVSESASGNSDNCDSEEDVKSNKRVTSRESAVKSKKRRVLDSDSDHDGSDVE
FKPDVKEAASSEEASSGVDENESTDMETDSESVAESPIKVPSKRKRRERSKPAKRSSLEN
ERSEAPKKAATLSSEAKSKLTSFAAPDSFESQANACSGGSNGFGTWEHEKLDWLQEGKKK
DAQKRRQNDPAYDPCTLYVPEDYLNKCTPGMRRWWQLKSQNFDAVVFYKVGKFYELYHMD
AVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMMETRCKSM
AHPTKFDRVVRREICRIITKGTQTYSILDCDPSESHNKYLLCVKEKEDSAGQCVYGVCFV
DTSVGKFYVGQFSDDRHCSRFRTLVAHYTPVQVLYEKGNLSVNTQKILKGSLVSCIQEGL
ISGSQFWNASKTLKVLLEEGYFKEKQDSENECSLPPVIKALTSESDSLGLTPGDNGELAL
SALGGCVFYLKKCLIDQELLSLANFEAYIPVDIDTAKIVCSSSSFARTDQRMVLDGVTLM
NLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAVEDLLAV
PGKISEVSEHLKKLPDLERLLSKIHSIGSPLKSQTHPDSRAIFYEEIKYSKKKIADFLST
LEGFKVMNEIIDAMEEVASDFKSKVLKQLVTRKAKNPDGRFPDLSAELKRWDTAFDHNQA
RKTGVITPKAGFDPDYDKALQDIKAVEEDLHKYLDKQRKLLGFKSVLYWGTGKNRYQMEI
PESVVSRNLPEEYELKSTKKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFD
KNSKDWQAAVDCVAMLDVLMSLANYSQDSDGPLCRPVILLPVDGAPPFLELKNSRHPCIT
KTFFGDDFIPNDIMIGSKDEESGSNASCVLVTGPNMGGKSTLMRQAGLLAIMAQLGCYVP
AEACRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILQHATEHSLVLVDELGRGTAT
FDGTAIASAVVKELAERIRCRTLFSTHYHSLVEDYSRSAAVRLGHMACMVENESEDPSQE
TITFLYKFIGGACPKSYGFNAARLADIPEEVIQQGHRKAQEFEKTTISLRVFRYLCQVVD
GTRSDGNAVGKLKAMISQL
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcagagcactctgctccgcttcttcccgaaggcctccccgcgggccgcagcg
ccggccccggcccctgcgcagagccgaacggggccctgcagccgccgcggcccgcccgag
gagaggaacggccggcaggaggccggggggggcggcggcgcggccgctgaggcctccagt
gtctcctgcaagtgctcacctggcgatgtggtctgggccaagatggaaggttacccgtgg
tggccgtgcctcgtgtacaaccatccaacagaaagaacgatattccgagggaaagggaaa
acagcccgtgtccatgtgcagttctttgatgacagccctacaaggggctgggtcagcgtt
aaatacgtgaagccatataaaggttcctcagatgcagagacactgaagggagggatgttt
tatagcacaaagcctgagataaagagagcaatggtgctagcagatgatgcgatgagtaaa
gatgtaactaagcggcttgaactggcagtgtgctgtgaaccctccgatactgaggaggag
gaagaggaggaagaagaaatggagcaggtgagtgaaagcgcgtctggcaacagcgacaac
tgcgacagtgaggaagatgtgaagagcaataagcgagtgacaagcagggaaagtgctgtc
aaatccaaaaagaggagagtgttggattctgatagcgatcacgatggctctgacgtagag
ttcaaacccgatgtgaaggaagcggcaagcagcgaggaagcaagtagtggggtggatgaa
aatgaatctactgacatggagacagactcggagagtgttgcagaaagtcccataaaagtc
ccttccaaacgaaaaagaagagagagaagcaagcctgctaaaaggagcagcttagaaaac
gaacgttctgaagcacccaaaaaagcagcaacactttcttcagaagccaagtctaagctc
acatcatttgcagcacctgacagctttgaatcccaagcaaatgcttgcagtggaggcagc
aatggcttcggaacgtgggagcatgaaaagcttgattggctgcaggaagggaaaaagaag
gatgcgcagaagagacggcagaatgaccctgcttatgacccatgtacgctgtacgtgcca
gaggactacctcaacaagtgtacgcctgggatgcggaggtggtggcagctgaaaagtcag
aacttcgatgctgtggttttctacaaagtcgggaaattctatgagctgtatcacatggat
gcagtcactggtgttaatgaattgggcctgatatttatgaaaggtacttgggcccattct
ggttttccagaaactgcttttggcaggttctctgatgtcctggtgcagaagggctacaag
gtagcccgtgtggagcaaacggaaactcctgagatgatggaaacgcgctgcaagtctatg
gcccacccaacgaagtttgacagggttgtacgccgagaaatctgcaggatcatcaccaaa
ggcacgcagacgtacagcatccttgactgtgatccctctgagagccataacaaatacctc
ctgtgtgttaaggagaaagaagactctgctggacaatgcgtttatggggtctgctttgtg
gacacatcagtggggaagttttatgtgggccagttctcggatgaccggcactgttcgcgg
tttaggactttggtagcacattataccccagtgcaggtgctgtatgagaaggggaacctg
tctgtgaacacacagaagatattgaaaggttcactcgtttcttgcattcaggaagggctg
atctcgggttcccagttctggaacgcatctaaaacactaaaggttcttcttgaagaagga
tacttcaaggagaaacaggactctgaaaatgagtgttctttgccccccgtcatcaaagct
ttgacttcagagagtgactcactgggattaacacctggtgacaacggggaattagcattg
tcggctcttggaggatgtgtcttctatctcaaaaagtgcctgattgaccaggagctgttg
tcactggccaacttcgaagcatacatccccgtggatattgacactgcaaaaattgtgtgt
tccagtagttcttttgccagaacagaccagcggatggtgctggatggagtcaccctgatg
aacctggaagtcctgcagaatggaaccaacggaaccacagaaggcactttgttggaaagg
atcgattcctgctgcacgccgtttgggaagcgactcctgaaacagtggctctgcgctccg
ctttgtaatccaaaatccattaatgatcgcttggatgctgtcgaggaccttctggcagta
ccaggtaaaatctctgaagtgagcgagcatctgaagaaacttcctgacctcgaaaggctg
ctcagcaaaatccacagtatcggatcaccacttaaaagccagactcaccctgacagcagg
gccatcttttacgaggaaatcaaatacagcaaaaagaaaatcgctgacttcttgtccaca
ctggaggggtttaaggtaatgaatgaaatcatcgatgcgatggaagaagttgccagtgac
ttcaaatctaaagtcctgaagcagctggtcacccgcaaagccaaaaatccagacggacgc
ttcccagacttgagtgcagagcttaaaaggtgggatactgcttttgatcacaaccaggct
cggaagacgggagtgattactccaaaggcaggctttgaccccgattatgacaaagcactt
caggatattaaagctgtcgaggaagatcttcacaagtacctggataagcaacgcaaactt
cttggattcaaatccgtgctgtactgggggacgggcaaaaaccgataccagatggaaata
ccagaaagtgtagtatcccgtaatttgcctgaggaatatgagttgaaatccaccaagaag
gggtataagcgctactggaccaaggagattgagaagatgctggctgccatggtcaatgca
gaggagcgcagggacgcagccctgaaagactgcatgaggcggttgttctacaactttgat
aagaacagcaaggactggcaggcagcggtggactgtgtggccatgctcgatgtcctgatg
tccctcgcgaactacagtcaagacagtgatgggccactgtgccgacctgtgatcctgctg
ccggtggatggtgctcctcccttcctggaactgaaaaattcacgccacccctgcattaca
aaaactttctttggcgatgattttattcctaatgacatcatgataggcagcaaggatgaa
gagagcggtagcaacgcttcctgtgtcttagtcaccggacccaacatgggtggcaaatct
acgctcatgagacaggctggtctcctggctatcatggctcagctgggatgctatgtgcct
gccgaggcctgcaggctcacacccatcgacagagtgttcaccaggcttggtgcctcagac
aggatcatgtctggtgaaagtaccttctttgttgaactgagtgagactgccagcattctc
cagcatgcaacagagcactccctcgttctggtggatgaactgggcagaggcacggctacg
tttgatggaacagcgatagcgagtgctgtggtgaaggaactggcagagaggatccggtgc
cggacactgttctccacccactaccactcgctggtggaggattactcacgcagcgctgct
gtgcgcctcgggcacatggcgtgcatggttgaaaacgagagtgaggatcccagccaggaa
actattacattcctgtacaagttcattgggggagcgtgtccaaagagctatggcttcaac
gcagcgagactagctgatatcccagaggaagtcattcagcagggacaccggaaggcacag
gagtttgaaaaaacgaccatttcgctgcgagtattcaggtacctgtgccaggtggtggat
gggacgagaagcgatgggaacgctgttgggaagctgaaggcaatgatcagccagctgtga
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