Cuculus canorus (common cuckoo): 104060757
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Entry
104060757 CDS
T08597
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104060757 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104060757 (MSH2)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104060757 (MSH2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
104060757
NCBI-ProteinID:
XP_053919177
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Position
3:71099889..71143585
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AA seq
936 aa
AA seq
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MAAEVPREAAWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTLHGGDARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSIKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSTADGQRVVGVGYVDNTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDI
VQDLNRLLKSKKEEQINSAALPEMEKQVAVSSLSAIIKFLELLSDESNFGQFELTAFDLS
QYMVLDNAAVQALNLFQSSVENSNATQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIE
ERLNLVEAFVLDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLNDIYSDFSKFLEMIETTLDMDKVENHEFLVKASFDPN
LTELREKMNELEEKMQSFLKSAAKELGLEAGKSIKLETNSQFGHHFRITCKEEKVLRNNT
KYVIVDTQKNGVKFTNSKLSSINEEYIKNREEYEEAQDAIVKEIINIASGYAEPIQMMND
VIAQLDAIVSFAHVSNGAPVPYVRPLILEKGHGRIVLKGARHPCIEVQDEVAFIPNDIAF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCDSAEITVVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKIRAF
CMFATHFHELTALADQVPTVNNLHVTALTTDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQDFGKSRACEGEPPAKKSYREREEGEKIIQDFLCRVKALPLTD
MSEEEIRAKLRQLRSDVLAKNNGFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaggtgccgcgggaggcggcgtggcctgagggtgcgggggccgaggcgggc
ttcgtgcgcgccgtcctctcgctgccggagaagcccgacactaccgtgcgcttcttcgag
cgcggggactactacacgctgcacggcggggacgcgcggctggccgcccgcgagctgttc
cgcacccgcgccgtcatccggcagctggcgggggcgccgggaactcagaaacttgagagt
gttgtgctcagtaaaatgaacttcgagtctttcgtgagagatctgcttctggttcgtcat
tacagagtcgaagtctacaagaacaaagcagggagtaaatcgatcaaagaaaatgactgg
tatttagcatacaagggttctccaggaaatcttgctcagtttgaggaagtcctttttgcc
aacaatgacatgtcgacagccattggggtggtgggggtgaagctgtccactgcagatggg
cagagagtggtgggagtgggctatgtcgacaatacgctgcgaaagctgagtgtctgcgag
tttcctgataacgatcagttctcaaacctggaagctctgctggtgcagctgggcccaaag
gaatgtgtgctgccaggaggagagactgcaggagagatgggaaaactgcggcaagtcatt
cagagaggaggaatcctgattacggacaggaagaaggcggatttcacaacaaaagatatt
gttcaggatctcaaccgcttgttaaaatcaaaaaaggaagaacaaataaacagtgcagca
ttgccagagatggaaaaacaggttgctgtttcatctttgtcggccattattaagtttttg
gagttgctgtcagatgagtctaattttggacaatttgaactgactgcttttgatctcagt
caatacatggttctagataatgctgctgtacaagccctcaaccttttccagagctctgtg
gagaactctaacgctacccagtctctagctggtttactgaataaatgcaggacccctcaa
ggacagaggctggttaatcagtggatcaaacaaccgcttatggacaagaatagaattgaa
gaaaggttgaatctggttgaagcttttgtgttggatccagaactacgtcagtgtctgcaa
gaagatctcttacgtcgcttcccagatctcaaccggctggcaaagaagtttcagaggcaa
gcagcaaacttacaggactgttaccgaatgtatcaggctatcaatcaactgcctaatgtt
gtgcaagcactagagaaacatgaaggagctcaccagatgttgttgttggcagtgttcata
acacctcttaatgatatctactctgacttctctaagtttctggagatgatagaaacaaca
ttggacatggataaggtggagaatcatgaatttcttgtcaaggcttcctttgatccaaat
ttgacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtcctttttaaag
agtgcagccaaagaactgggtttggaagctggcaaaagtatcaaactggagacaaattct
cagtttggacatcactttcggataacttgcaaagaggaaaaagttctccggaacaataca
aaatacgtaatagttgatacccagaagaacggtgtgaagtttactaacagcaaactgagc
tccatcaatgaggaatatataaagaacagagaagagtatgaagaggctcaggatgccatt
gttaaggaaatcattaacattgcttcaggttatgcagagccaatacagatgatgaatgat
gtcatagctcagttagatgcgattgtcagctttgcgcatgtgtcaaatggagcaccagtg
ccatatgtccgaccgctcatcctggaaaagggacatggaaggattgtgctgaaaggtgcc
aggcatccttgcattgaagtacaggatgaagtggccttcattcccaacgacattgcattt
gagaagggcaagcaaatgttccacattatcactggccctaacatggggggaaaatcaacc
tacatccgccagacaggggtgattgttcttatggcccaaattggctgctttgtaccatgc
gactccgcagaaatcactgttgtggattgtatcttggctcgtgtgggagccggggacagc
cagctgaaaggtgtgtctaccttcatggccgagatgttagaaactgcttccatccttcgg
acagcgtctgaaaactccctgataatcattgatgagctgggcagaggaacttctacctac
gacggctttggcttagcgtgggcgatttcagaatacattgctagcaaaatccgtgctttc
tgtatgtttgccacacattttcatgaactgacagctctggctgaccaagtgccgacagtg
aataacttgcatgttactgccctgaccactgatgacacactgacaatgctctatcgggtt
aaggaaggtgtttgtgaccagagttttggaatacatgtggcagagttggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcgttggagctggaggagtttcaagacttt
ggcaagtccagggcatgtgaaggagaaccaccagccaagaaatcctacagagagagagag
gaaggtgaaaagataattcaggattttctttgccgagtgaaggcgttgcccctgacagat
atgtcagaagaggagatcagagccaagctgagacagctgaggagcgatgtgctggcaaag
aataatggctttgtgaatgaaataatttcccgaacaaaagttacatcatga
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