Cuculus canorus (common cuckoo): 104060907
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Entry
104060907 CDS
T08597
Symbol
PDLIM5
Name
(RefSeq) PDZ and LIM domain protein 5 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104060907 (PDLIM5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cuca04990
]
104060907 (PDLIM5)
Domain-containing proteins not elsewhere classified [BR:
cuca04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
104060907 (PDLIM5)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
PDZ_6
DUF4749
Motif
Other DBs
NCBI-GeneID:
104060907
NCBI-ProteinID:
XP_053920545
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Position
4:50801923..50930783
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AA seq
875 aa
AA seq
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MSNYSVSLVGPAPWGFRLQGGKDFNMPLSISRLNDGGKAARAQVGIGDVVLTIDGISTDG
MTHLEAQNKIKACTGNLNMTLQRVASVTKPDLIHVPKGEPTEVVKPVPIASAVAPKVTAT
ASVACNKTPRPFGAVTSSKVTSIPSPSSAFTPAQAAATPAPFAAPGLHVNSKPNTEQRSP
APSAAKPAVNIPRQPAVQNAAPSASAGDGTQDVAEGLRRGLRENQGESKQQNGKNPPKRP
PRKHIVDTYTEFYHTPTHSDASKKRLIEDTEDWHPRTGTTQSRSFRILAQITGTDHMKEP
EQEAAKKTKKSQTESGDFRKPADLPNGAGAQDACVNLNKNSIATQALEIAPVSDFPSTPL
PPMSENSARPEPAATLLPIAESFPGSVPSPRLSEHIPAASPGRKITVELPAPDAASLLTA
DKEPALPVKCAVATQTSESSLSTAVVMQPPSAAPPVEMAVVLSPIPARLEASLHSYETNS
FSKISSCQFKSSVSHTRKVENPSGSLPKIGPAPLAVLSPFKQSSKIKRMAAAAVSAAIAV
RARLSEPSVYRSLLDALLITPVTKPPLQAIGPSRKSMSALELQKSKSDSLEATQPAAFTA
ASVRSMPAQQENVDVRPASASTTSAAALKPTAPPAAAKYLGWQPANQAAPASGWTSNSIK
PPGTTAPTEKLVTAPQLNEQDTLVQKAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHP
EEFNCAHCKTSMAYIGFVEEKGALYCEVCYEKFFAPECSKCQRKILGEVINALKQTWHVS
CFVCVACHNPIRNNVFHLEDGDPYCETDYYALFGTMCRGCEFPIEAGDRFLEALGHTWHD
TCFVCSVCSDSLEGQTFFSKKDKPLCKKHAHSINI
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactacagtgtgtctttggttggcccggctccttggggtttcagacttcaaggg
ggcaaagatttcaacatgcctctgtctatctctcggcttaacgacggtggaaaagcagcc
cgagcacaagtggggataggtgatgtggttctcaccattgacgggataagtacagatggg
atgactcatctagaagcacaaaacaagatcaaggcatgtacaggcaatttgaacatgact
ctgcaaagagtggcttctgtaacaaaacctgatcttattcatgtacccaagggagaacct
acagaagtagttaagcctgtacccattgcctctgctgttgcacccaaagtcactgccaca
gcgagcgtggcttgcaataagacaccgagaccgtttggagctgtaacctcctccaaagtc
acctccatcccatcaccgtcctccgccttcaccccagcccaggcggctgccaccccagcc
ccgtttgctgcacccggactgcatgttaactccaagcctaacactgagcagcgatcgcct
gcgccgagcgctgctaaacctgcagttaatatcccacggcagcccgctgtgcaaaatgcc
gccccgagtgcctccgccggcgatggcacccaggatgtagctgaggggctacgacgagga
ttgagagaaaaccagggggagagtaaacagcaaaatgggaaaaacccacccaaacgccct
ccacggaaacacatcgtggatacctatacagagttttaccacacacccacccacagtgac
gccagcaagaagcgactgatcgaagatactgaagactggcatccccggacaggcaccact
cagtcccgctccttccgcatccttgcccaaatcactggcactgatcatatgaaagaacca
gaacaggaagctgcaaagaagactaagaaaagccaaacagaaagtggagacttcaggaaa
cctgcagatctccctaatggagcaggagcccaggatgcctgtgttaatctgaataaaaac
tccatagctacccaggctttggagatcgcacctgtatcagactttccatccacaccttta
ccacctatgagtgaaaacagtgctagaccagaacctgcagccactcttctgccaatagca
gagtccttccctggcagtgtcccctctcccagactttccgaacacattccagcagcatct
cctgggaggaaaataactgtggagttgcctgctccagatgcagcaagccttttgacagct
gataaagaacctgctctccccgtgaagtgtgctgtggccacacagacctctgagtcttct
ctgtccaccgccgtagtcatgcagccaccttcggcagccccacctgtggaaatggccgtc
gtgctgtctcctattcctgccaggcttgaagcatctctgcattcatatgaaacaaattct
ttcagtaaaatctcaagctgtcagtttaaatcatctgtaagtcataccagaaaagtggaa
aatccttcaggaagtctgcccaagattggacctgcacctcttgctgttctttctcctttc
aagcagagctcaaaaattaagagaatggctgctgctgctgtgtctgctgccattgctgtc
cgggccagactctctgaacctagtgtctaccgctcactcttggatgccctgctcatcaca
cctgtcactaagcctcctctgcaggccatcgggccctccaggaagtccatgagtgctctg
gagttgcaaaagagcaagagtgattccctggaggctacccagcctgctgctttcacagct
gcctcagtaaggagcatgcctgcccagcaagaaaatgtggacgtgagacctgcttctgct
agcaccacatctgctgcagccctcaagccaacggcaccaccagctgctgccaagtacttg
ggctggcagcctgcaaaccaagcagctcctgccagtggatggacatcaaacagtattaaa
ccacctggaacaactgccccaactgaaaaactggtgacagcacctcagctaaatgagcaa
gacacgttggttcagaaggcagagcatattccagcaggaaaacgtactcccatgtgtgca
cactgtaatcaagtcattagaggacccttcttggtggctttggggaagtcgtggcatcct
gaggagtttaattgtgctcattgcaaaacctctatggcttatattggatttgtggaagag
aaaggagccttgtattgtgaggtctgctatgagaagttctttgcccctgagtgttcaaag
tgccaaaggaagatacttggggaagtaataaatgctttgaaacaaacttggcacgtttcc
tgtttcgtgtgtgtggcctgtcacaaccccatccgcaataatgtcttccacttagaagat
ggtgatccctactgtgagacggattactatgctctcttcggtactatgtgccgtggctgt
gaattccccattgaagccggagatagatttcttgaagctctgggccacacttggcatgac
acttgctttgtatgctcagtatgcagtgacagtttggagggtcagactttcttctccaag
aaagataagccactgtgcaagaaacatgctcactctatcaacatctga
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