Cuculus canorus (common cuckoo): 104060935
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Entry
104060935 CDS
T08597
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104060935 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cuca03041
]
104060935 (DDX46)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104060935 (DDX46)
Spliceosome [BR:
cuca03041
]
Complex A
U2 snRNP components
U2 related factors
104060935 (DDX46)
Complex B
104060935 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
104060935
NCBI-ProteinID:
XP_053935360
LinkDB
All DBs
Position
14:complement(17610378..17630980)
Genome browser
AA seq
1042 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKRDDRRSRSRDRDRRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRERRRSRSRSRGRRSRSSSPSKNRKTENRSRSKEK
TDGVEVSKEKKKDKDDKEEEKEKDATTNAVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGDEVENEELDPLDAYMEEVK
EEVKKFNMRSVKGGGSEKKTGPTVTKVVTVVTTKKAAVESEKKKGELMENDQDAMEYSSE
EEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLEM
EGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAK
TGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVV
CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDM
GFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHV
IVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYD
RDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKG
YAYTFITEDQARYAGDIIKALELSGNPIPTDLEKLWADFKDQQKAEGKLIKKSSGFSGKG
FKFDETEQALANERKKLQKAALGLQDSDDEDTAIDIDEQIESMFNSKKRVKDMGTPGTSN
APTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVLVPFHFKDVMQQATNAILRGGTIQAP
TVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWKV
TSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLI
KEELIRLQNSYQPTNKGRYKVL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtccaggcattatcggaagcgctctgcgtcacgtggacgctctggtagc
cgttctagaagtcgttctccatctgacaaacgaaaacgtgatgacaggcgctctcgaagt
cgagatcgagatcgtaggcgtgagaggtcacgcagtagggacaagagaaggtctcgatcg
cgtgacagaaagcgtcaaagacgttcaagaagtagagagagggaacggagccgagagagg
agaaggtcccggagccgagagaggaggcgctctagaagcagaagtagaggtagacggtct
cggtcctccagcccaagcaagaacaggaaaacagaaaacagatcaaggtctaaagaaaag
acagacggtgtggaagtttccaaagaaaagaaaaaagacaaagacgacaaagaagaagag
aaggagaaagatgctaccacaaatgccgtggccactgagaattttgatcagaacaaacta
gaagaagagatgagaaaacgaaaagaaagagtggagaaatggagggaagaacagcgtaag
aaagctatggaaaacataggagaactgaaaaaagaaattgaagagatgaaacaggggaag
aaatggagtttagaagatgatgatgatgatgaagaggagactgcagaaggagaaaaagaa
ggtgatgaggttgaaaatgaagagttagatcccttggatgcttatatggaagaagtaaaa
gaagaggtgaagaagttcaacatgagaagcgtgaaaggtggtgggagtgaaaagaaaacc
ggaccaactgttaccaaggtggtcactgtggtgacaaccaaaaaggcagctgtggagtca
gaaaagaagaaaggagagctcatggagaatgaccaagatgcaatggagtattcctcagaa
gaggaggaagttgatcttcagacagccctgactggctaccagaccaagcagaggaagctg
ctggaaccagtagatcatggaaagatagaatatgaacctttcaggaaaaacttctatgtt
gaagtaccagaactagctaaaatgactcaagaagaggtgaatgtgtacaggctggagatg
gagggaattacagtcaagggaaaaggctgccccaaaccaataaaaacctgggtgcagtgt
ggcatttccatgaagattctcactgccctcaaaaaacatggctacgaaaagcccactccc
attcaaagccaggctatcccagcaattatgaatggacgtgacttgattggcattgctaaa
acaggaagcggaaaaactattgcatttctcttgcccatgttcagacacattatggatcag
agagcgttagaagaaggagaaggtcccatagctgtcattatgacacctactcgcgagttg
gctttgcagattaccaaggagtgtaagaaattctcaaagacacttgggcttcgagttgtc
tgtgtttatggaggaacaggaatcagtgaacagatcgctgaactcaaaagaggtgctgaa
attattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggtcgagtg
acaaatctccgcagagtcacgtatgttgtacttgatgaagcagacagaatgtttgacatg
ggctttgagcctcaggttatgcgcattgtcgacaacgtcaggcctgatcgtcagactgtt
atgttctctgccacttttcccagagctatggaagcgttagctcggagaatcctaagtaaa
cccatagaagtgcaggttggaggcagaagcgttgtctgttctgatgtggagcaacatgtt
attgtcatagaagaagagaacaagtttttgaagttactggagctattgggacactatcag
gagaaaggatcagttatcatatttgtagataaacaagaacatgcagacgggttgctgaaa
gatttaatgagagcctcttatccgtgcttgtctcttcatggaggtatcgatcagtatgac
agggacagcattattaatgatttcaagaatggaacttgcaaacttctggtggccacgtct
gtagcggcaagaggcttggatgtaaaacaattgatgctggtggtcaattatagctgtccc
aaccattacgaagattatgtgcaccgagcaggacgaacaggacgagctggcaataaaggg
tatgcatatacgttcattactgaggatcaggcaagatacgctggtgatatcattaaggct
ttggagttgtccgggaatccaattcctactgatttagagaagctctgggctgacttcaaa
gaccaacagaaggctgaggggaagttgattaaaaaaagcagtggattttctggcaaaggt
tttaaatttgatgaaaccgaacaggctttggctaatgaaagaaagaagctacaaaaagcg
gctcttggcttgcaagattcagatgatgaagatacagctattgatatcgatgaacaaatt
gaaagcatgttcaattcaaagaaaagagtaaaagacatgggaacaccaggaacatcaaat
gctcctacaccatcagctgggaatgcagaaaaattggaaattgcgaaaagattggctttg
agaatcaatgctcagaagaaccttggagccgaggcacaagtactggtcccattccacttc
aaggatgtgatgcagcaggcaacaaacgctatcctgagaggaggcacaattcaggctccc
actgtatctgccaagaccattgcagagcaactggctgaaaaaatcaatgctaagctcaat
tatgtacctatagagaagcaggaggaagagaaacaggatggaggacaaaacgagtccttt
aagagatacgaagaagaattggagatcaatgacttcccccagacggccagatggaaagtc
acctccaaagaagcactgcagagaatcagtgaatattctgaagctgctattacaatcaga
ggaacttacttccctccaggcaaagaacccaaggaaggagaacgaaagatttatttggct
atagaaagtgccaacgaactggctgtacagaaagcaaaggcagaaatcacacgacttata
aaagaggagctgatcagattgcaaaattcataccaaccaaccaacaaaggaagatacaaa
gttctatga
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