Cuculus canorus (common cuckoo): 104061178
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Entry
104061178 CDS
T08597
Symbol
SS18L1
Name
(RefSeq) calcium-responsive transactivator isoform X1
KO
K15623
protein SSXT
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104061178 (SS18L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cuca03036
]
104061178 (SS18L1)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104061178 (SS18L1)
GBAF(ncBAF) complex
104061178 (SS18L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
104061178
NCBI-ProteinID:
XP_009561369
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Position
16:complement(11276653..11294661)
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AA seq
441 aa
AA seq
DB search
MCGPPPRRHCGEAPHGQRADNNNPIPGWSPHAAGASHRTMSVAFASARPRGKGEVTQQTI
QKMLDENHHLIQCIMDYQSKGKTAECTQYQQILHRNLVYLATIADSNQNMQSLLPAPPTQ
NINLGPGGMTQSASNQSLHSQSNLSDAIGTGLPPSSLMQSQISNGPNHVSMQQSGQNTMP
TTSLSMTVSSHGTGPGYSHTVPASQNVPMQGQGSIGNYVSRTNINMQSNPVSMMHQQAAT
SHYNSAPGGSQHYQGQSSIAMMSQSNQGNSMMGQRPMGPYRASQQGSSQQYMGQEEYYSE
QYSHGQGSSEPMNQQYYPDGHGDYAYQQSSYTEQSYDRSFDDSTQHYYEGGNSQYSQQQA
GYQQGAAQQQTYSQQQYPNQQSYPGQQQGYGPAQGASSQYSSYQQGQGQQYGSYRASQTG
PSAQQQRPYGYEQGQYGNYQQ
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggtccccccccccggcggcactgcggagaggcgccgcacgggcagcgggcagat
aataacaatcccatcccaggctggagcccgcacgctgcaggcgcctcgcaccgcaccatg
tcggttgcttttgcatctgctcgcccgagaggcaaaggggaggtgacgcagcaaactatc
cagaagatgctagatgaaaatcaccacctaatacaatgtattatggattatcagagcaag
ggaaaaactgcagaatgtactcaataccaacaaatcttgcacagaaacctggtttatttg
gcaacaatagcagattctaaccagaatatgcagtccttgcttcctgctccaccaacgcaa
aacataaacttgggcccaggagggatgactcaaagtgcatccaaccaatctctccattca
cagagcaatctcagcgatgcaattgggacgggccttcctccttcctccctcatgcagagt
cagattagcaatggtcctaatcacgtgtctatgcagcagtcaggccagaacactatgccc
acaacctctctgagtatgactgtcagcagtcatggaactgggcctggttatagccataca
gtgcctgcatctcagaatgtgccaatgcaaggccaggggtcaataggcaattatgtgtct
cgaacaaacatcaacatgcagtctaatccagtctctatgatgcaccagcaagcagcaaca
tcgcattacaactcggcgccaggagggagccagcactaccaggggcagtcctccattgcc
atgatgagtcagagcaaccagggcaacagcatgatgggccagcgaccaatgggcccttac
agagcctctcagcaaggttcctcgcagcagtacatgggtcaggaggaatattacagtgaa
cagtacagtcacggacaaggctcatcagaacccatgaatcagcaatactatccagacgga
catggtgattatgcctatcagcagtcatcctatactgagcagagctatgacaggtcattt
gacgactctacacaacactattatgaaggaggaaattcccagtacagccagcagcaggca
ggataccaacaaggcgctgcacaacagcagacatattcccagcagcaatacccaaatcaa
caaagttatccaggccaacagcaaggctacggtcctgcacaaggagcctcctcacagtat
tccagctaccaacagggacagggccagcaatatggaagttacagagcttctcaaacgggc
ccatccgctcagcaacagaggccttacggctacgagcagggacaatatggaaattaccag
caataa
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