Cuculus canorus (common cuckoo): 104061180
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Entry
104061180 CDS
T08597
Symbol
TAF4
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104061180 (TAF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104061180 (TAF4)
03036 Chromosome and associated proteins [BR:
cuca03036
]
104061180 (TAF4)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
104061180 (TAF4)
Coactivators
SAGA/TFTC/STAGA complex
104061180 (TAF4)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
104061180 (TAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
104061180
NCBI-ProteinID:
XP_053937746
LinkDB
All DBs
Position
16:11328576..11367395
Genome browser
AA seq
1099 aa
AA seq
DB search
MAAGSDLLDEVFLNTEVDEKVVSDLVGSLESQLAASGHHHQHHKAQEPLRAAGGLLGNHV
VSGSGSGGSASPAGVVVGGNADAQTESGSGGKMGLSAAEITKAGAGVQGGVINHNTRSQT
SALDGAATTSTSTTTAAAGGSDVTAAPGTLGQGKSVVISTMATALSTRNGKIGTTTVQTL
NGSNVVMNSHHTGSGAFPGTPTTANPASAPAVAPLINNGPGSVGKGNTVNAVLPSASNTV
IQTSFLNTAVSSASSSSPTVISSQPPPSIGTGAPTVTLVRPPIHTAGPTVAAAGAATQNG
SNTVINSTISVGSFPAVATATVGSGVSLQTSLVNSQSGSTVPAAPATQVIKSESPKTIVQ
AVSQQQTLATGGQPSTTGGNMIIGQTMQAGLSNVAPNPGGIPPAAPGTPTGMAKGTANTV
AQSLPRTPTATTSGIRATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMI
PQQALAQMQAQAHAQSQPQNTLTPRPATPTNAPPVQISTVQAPGTPIIARQVTPTTIIKQ
VSQAQTTVQPTTTLQRPPVVQPQIVLGGTAQTTTLGAATAVQTGTPQRTVQGTTATSTAA
TETMENVKKCKNFLSTLIKLASSGKQSSETAANVKELVQNLLDGKIEAEDFTSRLYRELN
SSPQPYLVPFLKRSLPALRQLTPDSAAFIQQSQQQQPTTQATIATIPSAAVLLSSSVQRT
AGKATATVTSTLQQPVISLTQPTQVGVSKQGQSTPLVIQQSQKAGTLIRPPQVTLTQTPM
VALRQPHSRIMLTTPQIQLNQLQTVPVVKPAVLPGNKAIATVSTQVAAAQKNKLKEPGGG
SFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDETFLFPAPLQRRILEIG
KKHGITEIHPDVVSYVSHATQQRLQNLVEKLSETAQQRNISYKDDERYEQASDVRAQLKF
FEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANL
TALAAIGPRKKRKIDSLGSGSGTEGSGSSAAVPGSSGVGTTRQFTRQRITRVNLRDLIFC
LENERETSHSLLLYKAFLK
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggctcggatctgctggatgaggttttcctgaacacggaggtggatgagaag
gtggtaagcgacctggtgggctccctagagtcccagctggccgcctccggccaccaccac
cagcaccacaaggcgcaggagccgctgcgggccgctggggggctgctggggaaccatgtt
gtgagcggcagcggcagcggcggcagcgccagccctgcaggagtagtagtgggaggcaac
gctgatgcccaaacagagagcggcagcggcggcaagatgggactgagcgccgccgagatc
acaaaagcaggagcaggagtgcaagggggtgttattaatcataacaccaggtcccagact
tcagctctggatggagccgccacaacgagcaccagcaccaccactgcagcagcaggagga
tccgacgtcactgctgccccagggaccctcggtcagggcaaatcggtggttatcagcacc
atggcgactgccttgtccactaggaatggcaagatcgggaccacaacggtgcaaactttg
aatgggagtaatgtggtgatgaactctcaccacacaggaagtggtgctttccctgggact
cctacgaccgctaaccctgcttctgcacctgctgtggcccctctcattaacaatggacct
ggatctgtggggaaaggaaatactgttaatgctgttttgccgtcagcttccaacactgtc
atccagacttctttccttaatactgctgtgtcctctgcatcttcctcctcgcccacagtt
atctcctcacagccaccaccaagcattggaactggggcaccaacggtaacgcttgtgagg
ccaccgattcacacagcaggacccacggtagctgcagctggtgcagccactcagaatggg
agcaatactgtgatcaattcaaccatcagtgtggggagttttcctgccgttgctacggcc
actgtgggatctggagtttccctccagacatcacttgtgaacagccagtctggttctact
gtgccagcagctcccgccacacaggtcatcaaatctgagtctcctaaaactatagtccag
gcagtatcccaacagcagacgctggctactggtggccagcccagtactacagggggtaac
atgattattgggcaaactatgcaagctgggctctccaatgttgctcccaatcctggtggg
atacctcctgcggctcctggcacccccacaggaatggctaaaggcactgccaatacagtg
gcacaaagtctgccaaggactccaacagcaactacgagtggaatcagagcaactttgact
cctacagttttagcacctcgtttgcctcagccacctcagaatccaactaacattcagaat
tttcagttaccaccaggcatggtccttgtgcgcagtgagaatgggcagttgctgatgatc
cctcagcaagccttggcgcagatgcaagcgcaggcacatgctcagtctcagcctcaaaat
actctgactcctcgtcctgctacacctaccaatgctccgccagtgcagatatcgacggtg
caggctccaggaacgcctatcattgcacggcaggtgacaccaactactattatcaagcaa
gtgtctcaggctcaaacaacagtgcaacccacaacaacgctacagcgtcctcctgttgtg
caacctcagattgttctgggtggtactgcacaaacaactacgttgggggcggcaacagct
gtacaaactggaactcctcagagaacagtgcaaggaacaacggcaacctccactgcagcc
acagaaactatggaaaatgtgaagaaatgcaaaaactttctgtccacattaataaaactg
gcatcatctggaaaacagtcttcagagactgcagctaatgtgaaagaattggtacagaac
ctgctggatggaaaaattgaagcagaagattttaccagcaggctgtacagagaacttaat
tcttcacctcaaccttaccttgtgccttttctgaagaggagtttacctgccttgagacag
ttaacaccagactctgcagctttcattcaacaaagtcaacagcagcaaccaacaacgcaa
gcaacgatagcaacaattccatctgcggcggtgctcctaagctcctcagtgcagcgcaca
gcagggaaggcaactgcgactgtaacgagtactctccaacaacctgtaatcagcctcact
caaccgacacaagttggtgttagtaaacaagggcagtctacaccactggttatccaacag
tctcaaaaagcagggacattgataaggcctccacaggtaacattgacacagacaccaatg
gtagcattgcggcagccgcatagtcgtattatgctcactactcctcaaattcaactgaat
caacttcagacagtacctgtggtaaaaccagcagtattacctggaaacaaagctatcgcc
actgtttcgacacaagtagctgctgctcagaagaataaactgaaagaacctgggggaggc
tcttttagggatgatgacgacatcaatgatgttgcatcaatggctggagtcaacctgtca
gaagaaagtgctcggatattggcaacaaactctgagctagtgggcacattaacacggtcc
tgtaaagacgaaaccttccttttcccagcacctttacaaagaaggatattagaaataggt
aaaaaacacggaataacagaaatccatccagatgtagttagctacgtatcacacgctaca
caacaaaggctacaaaaccttgtggaaaaattatcagagactgctcaacaaaggaatatt
tcttacaaggatgatgaaagatatgaacaagcaagtgacgttcgggcacagctcaagttc
tttgaacaacttgatcaaatagaaaaacagcgtaaagatgaacaagaaagggaaatttta
atgcgtgcagcaaagtctcgatctcgacaagaagatccggaacagcttaggttgaaacag
aaggccaaggagatgcagcaacaagagctcgcacagatgagacagagggatgccaacttg
acggcgttagctgcgattggtcccagaaagaaaaggaaaatagattcattgggatctgga
tcagggacagagggatctggttcaagtgcagcagtcccaggcagctctggagttggaaca
accagacagtttacgcgacaaaggataacgcgggtgaacctcagggacctcatattttgt
ttagaaaatgagcgagagacaagccattcactattgctatataaagcattccttaagtaa
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