Cuculus canorus (common cuckoo): 104061233
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Entry
104061233 CDS
T08597
Symbol
TMF1
Name
(RefSeq) TATA element modulatory factor
KO
K20286
TATA element modulatory factor
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104061233 (TMF1)
Membrane trafficking [BR:
cuca04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
104061233 (TMF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
ATG16
SlyX
Motif
Other DBs
NCBI-GeneID:
104061233
NCBI-ProteinID:
XP_053932814
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All DBs
Position
11:15374152..15392979
Genome browser
AA seq
1106 aa
AA seq
DB search
MSWFNASQLSSFAKQALSQAQKSIDRVLDIQAEESAWPDAVIPDYGDGSNSLISGGWDTS
SWGLTSNTEPQNQPISPTAITKPVRRTVVDESENFFSAFLSPTDVQSIQKNPVVSKPPAK
SQRPKEEVKSTLKESQHPSQLEVPVTTEAEVKDSSISSIVDLKTRDIPKEKVEEDSVLKS
NAKHEESTNEVTDKKVSALNLEVTDDALNEKSSVGGDGTEVVPDSTSQPHNAGTKDTGLE
TKERKTEDRQSNTPSPPVSTFSSGTSTTSDIEVLDHESVISESSVSSRQETADSKSSLHL
MQTSFQLLSTSACADYNRLDDFQKMTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDEL
SGRASASASVAVSPSAPKPVTADALKNESENLNDTPVLHAEEAEMEESGRSATPVNSEQP
DVLVATVQTVKEQALKEETEPQQDAVEKLLEEDTEKQELRKMIDSLTEKLEKREIQLLST
SKEKARLEEACDNLKDEMFRMKEESSSLSSLKEEFAQRIADAEKKLQLACKERDAAKKEV
KTVKEELATRLNTNETAELLKEKEEQIKGLMEEGEKLSKQQLHNSNIIKKLRAKEKEREN
TNTKQNKKIKELEEELQHLKQVLDGKEDLEKQHRDSIKQLNSVVERQEKDLAKLKVEVED
LGEQNRSVQAALDSAYKELADLHKANATKDSEAQEAALSREMKAKEELGLALEKAQDEAR
QQQEALAIQVADLRLALQRAEQQAARKEDYLRQEIGELQQRLQEAESRNQELSQSVTSAT
RPLLRQIENLQATLGAQTSAWEKLEKNLSDRLGESQTLLAAAAERERAATEELLSNKVQM
SSTESQNSLLRQENTRLQAQLEVERNRLKKVENENSRYEVELEELKDEYAKTLEDTKKEK
ALLATQLEMEKMKVEQERKKAIFMQEASKEKDRKSFTVETVSSTPTMSRSSSISGVDMAG
LQTSFLSQDDPHDHSFGPTATGGSNLYDAIRMGAGSSIIENLQSQLKLREGEISHLQLEI
GNLEKTRSIMAEELVKLTNQNDELEEKVKEIPKLRAQLKDLDQRYNTILQMYGEKAEEAE
ELRLDLEDVKNMYKTQIDELLKQRQN
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgagctggttcaatgcctcgcagctctccagcttcgccaagcaggcgctgtcgcaggcc
cagaaatccatcgaccgggtgctggacatccaggccgaggagagcgcctggcctgacgcc
gtcatccccgactacggcgacggatcaaattctctcataagtggaggatgggatacatct
tcctggggcttaacttcaaatacagaaccacagaatcagccaatatcgccaacagcaatc
actaagccagtgaggaggacggtagtagatgaatctgaaaacttcttcagtgcctttctc
tctccgacagatgttcagagtatacagaaaaatccagtggtatccaaacctccagccaaa
tcacagcgacccaaagaggaggtaaaaagcactttaaaggagtctcagcaccccagtcag
ctggaggtaccagtgacaacagaggcagaagtgaaggattcctctatatctagcatagtt
gacctgaaaacccgtgatattcccaaggagaaagtagaagaggattctgtgcttaaatct
aatgccaagcatgaagaaagcacaaatgaagttactgacaaaaaggtgtctgctctaaat
ttggaagtaactgatgacgctcttaatgaaaaatccagtgtaggaggggatggaacagag
gtggtgccagatagcacttcccagcctcataatgcaggtacaaaagatacgggtttggaa
acaaaggagcgaaagactgaggacaggcaaagcaatacaccatcacctccagttagcact
ttctcctcaggaacatccacaactagtgacattgaagttctggaccatgaaagcgtaata
agtgagagctcagtaagttcaagacaagaaactgcagattcaaaatccagtcttcatcta
atgcaaacatcatttcagcttttatctacatctgcctgtgcagattataatcgtttggat
gacttccagaaaatgactgagagctgctgctcctctgatgcttttgaaagaatcgattca
ttcagtgtacagtctttagatagtagaagtgtaagtgaaataaattcagatgatgagtta
tcgggcagggcttctgcttcagcatctgttgctgtcagtccgtctgcaccaaaaccagta
acagctgatgccctgaaaaatgaatctgaaaacttgaatgacactcctgttttacatgct
gaggaagctgagatggaagagagtgggagaagcgcgacccctgttaattctgagcagcca
gatgttttggttgctactgtgcaaactgttaaagaacaggctctgaaagaggagactgag
ccacagcaggatgctgttgaaaagttgttagaagaggacactgaaaaacaggagcttaga
aagatgattgattcattaactgagaaactggagaagagggaaatacagttattaagtact
agtaaagaaaaggcgcgcctggaagaagcttgtgataacctaaaagatgaaatgtttaga
atgaaagaagagagcagtagtctttcatctcttaaagaagagtttgctcagcgaattgca
gatgctgaaaagaagctccagctagcctgcaaagaaagagatgcagctaaaaaggaagta
aagactgttaaagaagaattggctactcgacttaatactaatgaaactgctgaattactg
aaagaaaaagaagagcaaatcaaaggattaatggaggaaggagaaaagctttccaaacag
cagctgcacaattccaacataattaagaaattaagagccaaggagaaagagagagaaaat
actaacacaaaacagaacaaaaagattaaggaattggaggaggagttgcagcatttaaaa
caggtgcttgatggcaaggaggaccttgagaagcagcatcgagacagcattaaacaactg
aacagtgttgtagaacgacaagaaaaggatcttgctaaacttaaggtggaagtggaagac
cttggagaacagaacagaagtgtccaggcagcacttgacagtgcatataaggaacttgca
gatcttcataaagctaatgctacaaaggacagtgaggcacaagaagcagccctaagtcgg
gaaatgaaggcaaaggaagagcttgggttagccctggagaaggcccaggatgaggcaagg
cagcaacaagaagccttggcaattcaggtggcagacctgaggctagcactgcaacgtgca
gaacagcaggcagcaagaaaagaagactatttacgccaggaaataggtgaactacagcag
agacttcaggaagctgagagccggaaccaagaattaagtcaaagtgttacgtctgctaca
cggccacttctccggcagatagaaaatctgcaagccacactgggagcgcagacctctgcg
tgggaaaaattggaaaagaacctttctgacagacttggcgagtctcaaactcttctagca
gcagctgctgagagagaacgggctgctactgaagaacttctttctaataaagttcagatg
tcttctactgaatctcagaatagtcttttaaggcaagaaaatacacgccttcaggctcag
cttgaagtagagagaaacagattgaagaaagtggaaaatgagaacagtaggtatgaggtt
gaactagaagagctcaaagatgagtatgcaaaaaccttggaagacacaaagaaagaaaag
gcactgctggctactcagttagaaatggagaagatgaaagttgaacaggaaagaaagaag
gcaattttcatgcaagaagcatcaaaggagaaggatcggaagtcatttacagttgaaact
gtttcaagtactccaactatgtcacgctctagttccataagtggagttgacatggcaggt
cttcagacctctttcctctcacaggatgatcctcatgatcactcatttggtccaacagct
actggtgggagcaatctttatgatgctataaggatgggagcaggttcaagtataattgaa
aaccttcaatcacagctcaaactaagagaaggagagatttcgcatctacagctggaaatt
ggaaaccttgagaaaacccgatcaataatggcagaagaactggttaaactaacaaatcaa
aatgatgaacttgaagaaaaagtgaaggaaataccaaaattacgtgcacagttaaaggat
ttggatcaaagatataatacaattcttcagatgtatggagagaaagcagaggaagctgaa
gaactccggctggatcttgaagatgtgaaaaacatgtacaagactcagatagatgaactt
ttaaaacaaagacaaaattaa
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