Cuculus canorus (common cuckoo): 104061388
Help
Entry
104061388 CDS
T08597
Symbol
RTTN
Name
(RefSeq) rotatin isoform X1
KO
K16484
rotatin
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cuca03037
]
104061388 (RTTN)
Cilium and associated proteins [BR:
cuca03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
104061388 (RTTN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RTTN_N
Motif
Other DBs
NCBI-GeneID:
104061388
NCBI-ProteinID:
XP_053915105
LinkDB
All DBs
Position
2:complement(59825112..59914326)
Genome browser
AA seq
2229 aa
AA seq
DB search
MELSSLVRKLGHELAEIRERSLKTILFKLDHNLISYADLVHEKVLFLNVLEWFNFPVVPM
KEEILNFVNNLIKHPPAAQKLIGIGAVEFFSQLRPNVDPNLQALIDGIVDRLFFLPSGLP
PSSLSVCYQTQPQLSVDQPVTPQEELSTGYFFQGRSHLPQLEIPPKRTFVKCLKFSTFPW
LTLTSTDRHVLSSNESSLRSNKQSLIWNTCELLQDVIMQDFPAEIFLQRPKIVQSLLSLL
NLAFAGDGRHRLALQAVSCLQQLCIFLRSRLNFHRDPNFSSTEQGTASQNSSISYCHEAR
VPPHSQDPSPGSSSPRPSVIGRTVQRPRGDGQDWDAASSSGNSTQANANSRISLHSPLEV
GHIDLPDIENEDILELQMKQLSLPQFCVSVLENAIPLLRTGSRRMMMEVLELLVEDMFLI
GDTISENVWEDDSLFALELKDKLLLVLGLLGETILYHKTNISAEQPEVMLVHHRMAFIST
SLFTVRLLQILLPVEKASKVLQKSLLNALFLLSLDMSFSLEHPSIHESVAAYLEQMSTEN
YSIYKQASEAAYSIECTCSFMTEVHKKGDKNLSELVELADQALSSLPYHQHFTLLQEFIH
ICSNIWKSPEANSSLQAEGQKVLLRLLSHPLLNIKTEAYRCCLEVVKDCLGIHNMTRPVS
SVCHGVHFLLHPKVLYEICTFGLQEDKNEVNSTAKAILMHLFQGRLVMAVLTWNKFIEAL
CPIIPVLQGYADTKDKLGNCVLTLSETTSDKEEGILPRTTRLRAALRLLFSKKQLVRSVA
LKHLSFHLLNEEEANLKRPHLHDSVLSGVSNLFIVERTIEIKLDDKIESVIKVETIEKLY
DILTSAAVDLALRKSAAEQLAIILEDTKMHGIVKKLGVIEEILAYLNECIHVDGKLMEPM
VLPCLILLRKLVYADPVVRLSLAQQSSLLLLLFRVSLLFQSDHAVLTETTVLLCLLLFDE
VARTETWADGVTHKDTGLPAFTLPVAVVRRYHLPIRITAHHVVSPNTVVVPLSSECLAVK
PVSDMLKVAWNLSWYNGIENLLQLINYEEEAETFLDLLKLSSEDFLILKITCTNYGLQDC
LNSIIQAVSHRDVRCALTRLSFYVLNDRLALKCTSGSCGTTLKNFVWQKAINRFLQVLPA
SVEDEKLLVDVLRFLNKLLREQRSNLESDHLKWILKSLHKNKPKSLLDLLVQPELQVRDE
IDETQTAVKQQLDKELIRLFNTLLFCSVSLTDREGLELASSFRTELALKLLQCLRLTDAP
HFYGLPSLERTLRGMVHVTALPGWSTYSAAVEPLTICKKYLTGLLEVISSFYVEWGGNAM
SFMGKGVTKSTVLCLLHLSHEMMAQAKDIDWISLWSLPFDNSEEQVLSQLRLAWLVPLWV
DRDPEVRFTALGIGSALTSLDTGCIALAESCRNISGGLWGTVINILLDQSECSMVRREAA
FILQNLLVIPIPAEDVKDSIWQGPCVHDEESGLSQTGKPALKALLYHCQFYEHVNQMVKC
CYLGCYMFDLNSSKENNLIIEKGDFDDSLNLWKAPFSQSGSSHSQSTSETMIRSVSPSLG
SVTELQATVQMNSTSFIPETVVDRLMAQGQSDTTTTESPSQHDSRMSTTLCKQRAVVTPA
LLSAICNLLHNLLVVTPKDTGIALRQTHLLTSLSSLVSANLVERCILELKAPLGHPCHIE
HVKAQVLLLLQYLSSVSRLLKSCLLVDSQIVIQDELLKPLLRNTFMILAIRPKDGLDTEL
TSVLHETWVDFFTLLTTLLWKSGQVSFPSVMAALANHCTAIIDTICDCIHLSATYPALYT
ASLQFLSVLLNEEGRRKLQDRQSICQNRTISFLLDHVEECQASVTQLTALIIQVCERKSS
KDVLKEVATNALLSLLAVSKSAQKCALEVGLIDSCIEDMKHIHAQLNLDSLKPGKAQKKK
EENLIKQLWCSMQVLRNCLFQNEECKMAALKAHLVPVLHSLWLWFLIDDDAMQIALHLLC
VYTANYPAGCSSLCWASGGQSSLLSARSAAGNSLMHNILKLASQVSNDRSPIQQVVFCLL
SNLALSHDCKGLIQKSNFLQNFLCLSLPKGSHKNPGNVCILWLKLLLNISFEEDGQQMIM
KINGFLDQVVEMCKYKHKSSQHLALLILHNLCFSPANKPKILANDEAIAVLSACLESDSC
AVQRIGAASFWALLHNYQKAKVTLKNPSIRRRIDEAYSLAKKTTPQPEENELHAYYLKCL
ENIVQLLDC
NT seq
6690 nt
NT seq
+upstream
nt +downstream
nt
atggagttgtcgtcgctcgtcaggaagctgggtcatgaactggcagagatacgagaacga
tctctaaagactatcctgtttaaattagaccataacttgatttcgtatgctgatctggtc
catgaaaaagtgcttttccttaatgttttggagtggttcaattttccagttgtaccaatg
aaagaagaaatactaaattttgtgaacaatttgatcaagcatccacctgctgctcagaaa
ctgattggaattggtgcagtggaattcttctctcagcttcgtcccaatgtggatccaaac
ttgcaggctctaattgatgggattgtggatagactgttcttccttccttctggacttcct
cccagttctttatcagtatgttatcaaactcagcctcagctttcagtagatcagccagtt
acacctcaagaggaattatccactggatatttttttcaaggtagaagtcatctgccacag
ttagaaatacctcccaaaagaacatttgtgaaatgcttaaaattttccacatttccttgg
ctaactctgacttcaacagatagacatgttctttcatcaaatgaaagctctttgagaagt
aacaaacaaagtttaatttggaatacatgtgaacttcttcaggacgtgattatgcaagat
tttcctgctgagatcttccttcaaaggccaaagattgtacagagccttttgtccctgcta
aaccttgcttttgcaggagatggaagacatcggttagctttgcaggctgtctcatgcctg
caacagttatgcatcttcttgagaagcagacttaactttcacagagatccaaatttttct
tccacagagcaaggtacagcttcccagaattcatctatatcttactgtcatgaagcaaga
gttcctcctcattctcaagatccatcacctggaagtagtagccctcggccatctgtgatt
ggacggacagttcagcgtcctagaggagatggtcaagattgggatgcagcatcttctagt
ggaaacagtactcaagcaaatgcaaactccagaatctctctgcattccccacttgaagta
ggacatattgacctaccagatattgaaaatgaggacattttggaattacagatgaagcag
cttagccttcctcagttctgtgtttctgttttggaaaatgcaatacctcttctaagaaca
ggcagtaggagaatgatgatggaagttctcgaattgcttgttgaagacatgttccttatt
ggtgatactatttctgaaaatgtttgggaagatgatagcctttttgcattggaattgaaa
gacaagttgcttctggtcttgggtttacttggagaaactatattatatcacaaaaccaat
ataagtgcagaacagcctgaggtgatgttggtgcatcacagaatggcttttattagcact
tcacttttcactgttagattgctgcaaatacttctccctgttgaaaaggcgagtaaagtt
ttacaaaagagtttgctgaatgctttatttcttctctctctggatatgtccttctctttg
gaacatccgagcattcatgaatctgttgcagcctatctggagcagatgagtactgagaac
tacagtatttataaacaagcttcagaagctgcatattcgattgaatgcacttgtagcttt
atgactgaagttcataagaagggggacaagaatctttctgaattagtagaattggcagat
caggccttgagtagtctgccctaccatcaacacttcactttgctccaggaattcattcat
atatgctcaaatatttggaagtctcccgaggctaactcgtctctccaggctgagggtcag
aaggtgcttctccgtctattgtctcatcctttactgaatataaaaactgaagcctatcgc
tgctgtttggaagtggttaaggactgtttaggtattcataatatgactaggcctgtgtct
tcagtctgccatggagtacactttcttcttcatccgaaagttttatatgaaatctgtaca
tttggccttcaggaagataagaatgaggtgaactctacagccaaggccattctgatgcat
ctattccaaggacggctagtaatggcagtattgacttggaacaagtttattgaggccctc
tgtcccatcattcctgttttacagggttatgctgacacaaaagataagctaggaaactgt
gtcctcactttgagtgaaacaacctctgataaagaagagggtattctccctagaactact
agactacgtgccgctctgcgtcttctcttctcaaaaaagcagttggttcgttctgtagca
cttaaacatttatcattccatcttttgaatgaagaggaggcaaacctgaaacgcccacat
ctgcatgatagtgtgctttctggtgtctcaaacttatttattgtagaaagaactattgag
ataaaattggatgacaaaattgagtcagtaattaaggtagaaactattgaaaagctgtat
gacatcttgacttctgctgctgttgacctagctttacggaagtctgcagctgaacagcta
gctatcattttggaagataccaaaatgcatggtattgtgaaaaagttgggtgtgatagaa
gagattttggcttatctgaatgaatgtatacatgtggatggcaagcttatggagcccatg
gtgttaccatgtctaatacttttacgcaaacttgtatatgccgatccagttgttcgtctg
tccctagcacagcaatcttctttgctgcttttgctattcagagtttccctgctattccaa
agtgatcatgctgttttaactgaaactacggtattgctttgtcttctgttgtttgatgaa
gtagcaagaacagaaacgtgggctgatggcgtaacccataaagatactggcctacctgcc
ttcactttacctgttgctgttgttagaaggtatcatctcccaatcaggatcactgctcat
catgtggttagccctaatactgttgtggtgccgctgtcttctgagtgcttggctgtgaaa
cctgtgtcggatatgcttaaggtggcttggaatctgtcgtggtacaatgggattgaaaac
ctactgcaactgataaattatgaggaagaagcagaaacatttttagacttgctaaaacta
tcctcagaagactttcttatactcaaaataacttgcacaaactatggactgcaggattgc
cttaattcaatcattcaggcagtatcccacagggatgttaggtgtgctcttaccaggctt
agcttttatgttctgaatgacagacttgcattaaaatgcacttctgggtcttgtggaacc
actttgaagaactttgtttggcaaaaagcaataaacaggtttctgcaagtacttccagct
tctgtggaggatgagaagcttttagtagatgtcttaagatttttaaacaaattgcttaga
gaacagagatcaaatttggagtcagaccatctaaagtggatcctgaaatcattgcataaa
aataagccaaaatctcttttggacctcctagtgcaaccagaattgcaagtgcgggatgaa
atagatgaaacacagactgctgtcaaacagcaactggataaagaactcattcgtctcttt
aacacattgttattttgttctgtgtcgctgactgatagagagggcttggagcttgctagc
tcttttagaactgagctggctctgaagctgctacaatgcttaagactaacagatgcacca
cacttttatggacttccttcactcgagagaacattaagaggaatggttcacgttactgca
cttccgggctggagtacctattctgccgcagttgagcctctcacaatttgtaagaaatat
ttaacaggtcttcttgaggtcatctcatcattttacgttgaatggggaggaaatgccatg
tccttcatgggaaaaggagttacaaaaagcacagttctttgcttgcttcacttatctcat
gaaatgatggctcaagccaaggatatagactggatatctctttggtctctgccttttgat
aacagtgaagaacaagttctttctcagctacgtctggcatggctggttcctttatgggta
gatagagaccctgaggtcagatttacagctcttggaataggatcagctcttacatctctt
gacacaggatgcattgctttagcagaaagttgccgaaacatttcaggaggtctgtgggga
acagtgataaacatccttttggaccaatctgaatgtagcatggtacgcagggaggctgct
tttattctacaaaatctacttgtgattccaattcctgcagaagatgtgaaagatagtatt
tggcaaggtccctgtgtacacgatgaagaatctggcctctctcagacaggaaaacctgca
cttaaggcccttttatatcactgccaattctatgaacatgtgaatcaaatggtgaaatgc
tgttacctgggatgttatatgtttgatttgaattcttctaaggaaaacaacctcatcata
gaaaaaggtgattttgatgattctcttaatctttggaaggctccatttagtcaaagcgga
tcttcacattctcagtcaacatctgaaacgatgattcgatctgtatcaccatcactgggg
agtgttactgagcttcaggctacagtccaaatgaattcaaccagttttattcctgaaact
gtagttgatcggcttatggcccaaggtcaaagtgatacaaccacaacagaatctccaagt
cagcatgattctcgtatgtctactactctgtgtaaacagcgtgcagtagtcactcctgcc
cttttgtcggctatttgcaacctgctgcacaatctgctggttgtcacaccaaaagatact
ggaattgctcttcgacaaacgcatttgctaacatctctcagcagtcttgtaagtgctaat
ctggttgagagatgcatcttggaactgaaagctccattgggtcatccgtgtcatatagaa
catgtaaaagctcaggtattattacttcttcaatacttgtcatctgtgtccaggcttctg
aaatcatgtttattggtggactctcagattgtaatccaggatgaactgttgaaacctctc
ttgagaaataccttcatgattcttgccattcgccccaaagatgggttagacacggagttg
acatctgtacttcatgaaacatgggtggacttcttcacccttctaactacattattgtgg
aagagtggccaagtatcttttccgtcggtgatggcagcccttgcaaatcattgtacagca
ataattgataccatttgtgattgtattcatctgtcagccacatatcctgctttatatacg
gctagtttacagttcctctctgtccttttgaatgaggaaggaagacggaagctccaagat
agacaaagtatatgtcaaaatcgaactattagctttcttctggatcatgttgaagaatgt
caggcatcagtaactcaacttactgcattaatcattcaggtttgtgaaagaaaatcttca
aaggatgtgctgaaagaagttgctacaaatgcattgctgtctctgttagcagtcagtaaa
agtgcccagaaatgtgctttggaagttggtctgatagacagctgtatagaagacatgaaa
catattcatgcacagctgaatttggattccctaaagcctgggaaagcacagaaaaaaaag
gaagaaaaccttatcaagcagttatggtgttctatgcaggtcctcagaaactgcctcttt
caaaatgaagaatgcaaaatggcagcactcaaagctcatcttgttcctgttctgcattca
ctgtggctgtggtttttaatagatgacgacgcaatgcaaatagctctacatttgctttgt
gtctacactgcaaactatccagcaggttgttcctccctttgttgggccagcggtggacaa
tcatcacttctctctgcacgaagtgcagctggcaattcattaatgcataacatcttgaaa
ttggcttcccaagtgtcgaatgatagaagcccaattcagcaggtggtcttttgtcttctt
tctaaccttgctctgtctcatgactgtaaaggccttattcagaagagtaacttcctgcag
aactttttgtgtctctcattaccaaaaggaagtcataaaaatcctggtaatgtgtgtatt
ctttggctgaagctgctactgaacatatcttttgaagaagatgggcagcagatgatcatg
aagattaatggatttttagaccaggttgtggaaatgtgtaaatacaaacacaagagcagc
cagcatctagcacttctcattctacataacttatgttttagtccagctaataaaccaaaa
atattagctaatgatgaagcgattgcagtactgtctgcctgtttggaaagtgatagttgt
gctgttcagagaataggagcagcttcattttgggctttacttcacaactatcaaaaggca
aaggtgactttgaagaatccatcaatacggagaagaatagatgaggcttactcattagcg
aagaaaactactccacagccagaagaaaatgagctacatgcctactatttaaaatgcttg
gagaatatagtgcagcttcttgattgttaa
DBGET
integrated database retrieval system
