Cuculus canorus (common cuckoo): 104061583
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Entry
104061583 CDS
T08597
Symbol
TRMT13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog isoform X1
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cuca03016
]
104061583 (TRMT13)
Enzymes [BR:
cuca01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
104061583 (TRMT13)
Transfer RNA biogenesis [BR:
cuca03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
104061583 (TRMT13)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
DUF7077
Motif
Other DBs
NCBI-GeneID:
104061583
NCBI-ProteinID:
XP_009561832
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All DBs
Position
8:complement(13651217..13658546)
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AA seq
483 aa
AA seq
DB search
MAARAGGAGADMAAPTGPCGACPIPGRCAYFVERKKRFCKMILAAGKRFCAEHGQQEEEN
GRKRIPCPLDPKHTVYEDQLQKHLKKCNSREKPKPVYFVQDINAGLKDVAEVPEKQLPVS
SLSKEELQNLIIKLKKASNGLEVHLKEQILSHQALEEALSDPKNGQSAFKHLKQQASILG
NMEKLHLLGPGRCFVEFGAGRGKLSHWVDVALQNVENIQFLLVERAATRFKVDGKHKRRD
SLFERLQVDIQHLCLKKVPVLEKKKLPVVGIGKHLCGAATDLALRCLVESYTAGSDEENE
EPAPKCSRTDQTEMASNNSADTESNKDDCKRVAGIVIALCCHHKCDWTHYVGREFFKSVG
LGPVEFHYFQRMSSWATCGMRETTTKSSTNEESEDQTNKAEEHEQTFSKTECGSDTLQGI
LTVEERKEIGCLCKLLIDHGRIEYLQQRGYKAALQYYTESAVSLENVLLTAVPRPSLTLE
PTT
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgcgcagggggtgctggggcagatatggcggcgccgacggggccgtgtggt
gcttgcccgatcccagggcgatgcgcctacttcgtggagaggaagaagcggttctgcaag
atgatcctggctgctgggaagcgcttttgcgcggagcacgggcagcaagaggaagaaaac
ggcagaaaaagaatcccgtgccctcttgatccgaaacacactgtatatgaagaccaactg
caaaagcatttaaaaaaatgcaattcgagagagaagccaaaaccagtctactttgttcaa
gatattaatgcaggtttaaaagatgtagcagaagtaccagaaaaacagctacctgtctct
tctctgtccaaggaagagctgcagaacttaattatcaagttgaaaaaagcaagtaacggc
ctggaagttcaccttaaagaacaaatactgtcccatcaggctttagaagaagccttaagt
gacccaaagaatggacaatccgctttcaaacacttgaagcaacaggcttctattttaggt
aacatggaaaaattacatttacttggcccaggaagatgttttgttgagtttggagctggg
cgaggaaagctgtctcattgggttgatgttgccttacagaatgttgaaaacattcagttt
ttgcttgtggaaagggcagctacaagattcaaggtggatggaaaacataaaagaagagat
tctctatttgaaaggcttcaagttgatattcaacatttatgtttaaagaaggtacctgtt
ttggagaagaaaaaactaccagtggtaggaattgggaagcacttgtgtggtgctgcaaca
gatcttgctttgagatgcttggttgaaagctacacagctggcagtgatgaagaaaatgaa
gagcctgcacccaaatgctctaggactgatcagacagagatggcttctaacaactctgct
gatactgaaagcaataaagatgactgtaagcgtgtagctggaattgttattgccctgtgc
tgccatcacaagtgtgactggacacattatgtaggcagagagttctttaaatcagtagga
cttggaccagtagaatttcattattttcagagaatgagtagctgggccacttgtggcatg
cgagaaaccacaaccaaatcctctacaaatgaagaaagtgaagatcaaactaacaaggca
gaagaacatgagcaaacattcagcaagacagagtgtggttctgatactttacaagggata
cttactgttgaagaacgaaaggagataggctgcctctgtaaactgctgattgatcatggg
cggattgaatatttacaacaacgaggatacaaggctgcactacagtactatacagagtct
gccgtgtccttggagaatgtcctgttgacagctgtcccaaggccatctttgacactagag
ccaactacatga
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