Cuculus canorus (common cuckoo): 104061840
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Entry
104061840 CDS
T08597
Symbol
CTR9
Name
(RefSeq) RNA polymerase-associated protein CTR9 homolog
KO
K15176
RNA polymerase-associated protein CTR9
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104061840 (CTR9)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
104061840 (CTR9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_17
TPR_10
TPR_11
TPR_7
TPR_6
ARM_TT21_5th
TPR_Slam
TPR_9
ARM_TT21_4th
ANAPC3
TPR_EMC2
Motif
Other DBs
NCBI-GeneID:
104061840
NCBI-ProteinID:
XP_009562127
LinkDB
All DBs
Position
5:complement(36323204..36345572)
Genome browser
AA seq
1168 aa
AA seq
DB search
MSRGSIEIPLRDTDEVIELDFDQLPEGDEVISILKQEHTQLHIWIALALEYYKQGKTEDF
VKLLEAARIDGNLDYRDHEKDQMTCLDTLAAYYVQQARKEKNKDNKKELITQATLLYTMA
DKIIMYDQNHLLGRACFCLLEGDKMDQADAQFHFVLNQSPNNIPALLGKACISFNKKDYR
GALAYYKKALRTNPGCPAEVRLGMGHCFVKLNKLEKARLAFSRALELNSKCVGALVGLAV
LELNNKEADSIKNGVQLLSRAYTIDPSNPMVLNHLANHFFFKKDYGKVQHLALHAFHNTE
VEAMQAESCYQLARSFHVQEDYDQAFQYYYQATQFASSSFVLPFFGLGQMYIYRGDKENA
SQCFEKVLKAYPNNYETMKILGSLYAASEDQEKRDIAKGHLKKVTEQYPDDVEAWIELAQ
ILEQTDIQGALSAYGTATRILQEKVQADVPPEILNNVGALHFRLGNLGEAKKYFLASLDR
AKAEAEHDEHYYNAISVTTSYNLARLYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAM
ARDKGNFYEASDWFKEALQINQDHPDAWSLIGNLHLAKQEWGPGQKKFERILKQPSTQND
TYSMLALGNVWLQTLHQPTRDREKEKRHQDRALAIYKQVLRNDPKNLYAANGIGAVLAHK
GYFREARDVFAQVREATADISDVWLNLAHIYVEQKQYISAVQMYENCLRKFYKHQNTEVL
LYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVL
NAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERE
LRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGEVEGSKE
KKRGGGGGRRSKKGAGEFDEFVNDDSDEDLPISRKKKKRKGSGSEQDGEEEEGERKKKKR
RRPQKADEGTDDEEHENGPRPKKRRPPKAEKKKAPKPERLPPSMKGKIKSKAIISSSDDS
SDEDKLKIADDGHARNSNSDSDDGERQHSKRIISDSDSDNRNKSGSEAGSPRRSHVRPSE
EDSDSDRSPRKRRRSDSEHSDNESVQSGRSRSGGSENESRPASHSADSDRDSERGGSDNE
GSGRASGNESEPEGSNDEGSEGGSDDSD
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgggggtctatcgagatccccctccgggacaccgatgaggttatcgagcttgac
tttgatcagttacctgagggtgatgaagttataagtatactgaaacaggaacacactcaa
ctgcacatatggattgccttagcgctggagtactacaaacaagggaaaacagaagacttt
gtgaagctgttagaagctgcgcgcatagatggtaacttggactatagagaccatgaaaaa
gatcagatgacgtgtctggacactctggcagcatactatgtacagcaggctcgaaaggag
aagaacaaagataacaagaaggagcttattacgcaagctaccttgttgtatactatggct
gacaaaattatcatgtatgatcagaatcacttgttgggaagagcctgcttttgtctgctt
gaaggtgataagatggaccaagctgatgcacaattccacttcgtgctgaaccagtctcca
aataatatccctgcccttcttggtaaagcatgcatttctttcaacaagaaagattataga
ggagcccttgcctactacaagaaagcattgcgtaccaatccaggttgcccagctgaggtt
cgattaggtatgggccactgctttgtgaaactgaacaagctggaaaaagctcgcttagcc
ttcagtagggctctggagctaaattcaaaatgtgttggagctttggttggactggctgtt
ctggaactcaataataaagaggccgattccatcaagaatggtgttcaactcctctctagg
gcttacacaattgatcccagtaatccaatggtgttgaatcacttggctaatcactttttc
ttcaagaaggactatggtaaggtacaacacttggctcttcatgctttccacaatacagaa
gttgaagcaatgcaggcagagagttgttatcagctggcaaggtcttttcatgtacaggaa
gattatgatcaagctttccagtattattaccaggccactcagtttgcctcatcttctttt
gtacttcctttttttggattgggtcaaatgtacatttatcgaggggacaaagagaatgca
tcacaatgctttgaaaaagtcctgaaagcctatcctaacaattacgagactatgaagatc
cttggatctctttatgcagcctcagaagaccaagagaaacgtgatattgcaaagggacat
ttaaagaaagtcacagaacaatatcctgatgatgtagaggcatggattgagctagcccaa
attctagaacagactgatatacagggtgcgctgtcagcttatggtacagccacacgtatt
ctgcaagagaaagtacaggctgatgtcccaccagagattttgaataatgtgggtgctctg
cacttcaggctgggaaacctaggagaagccaagaaatactttctggcatcattggatcgt
gcaaaagcagaagctgaacatgatgagcattattacaatgctatctctgtaacaacatcc
tataaccttgccagactatatgaggcgatgtgtgaatttcatgaagcagaaaagctgtat
aaaaacattttaagagaacatcccaattacgttgattgctacttgcgcttgggagctatg
gctagagataagggaaatttttatgaggcttctgattggtttaaagaagcacttcagata
aatcaggaccatccggatgcttggtctctgattggcaatcttcatttggctaaacaagag
tggggcccaggacagaagaaatttgaaagaatattgaaacagccctccacacaaaatgat
acttattccatgctggctcttggcaacgtatggttgcagactctacatcaacccacaaga
gacagagaaaaggagaagcgtcatcaagaccgtgcattagcaatctacaagcaagtactc
agaaatgatccaaagaatttgtatgctgctaatggcataggagctgtcttggcgcataaa
ggatatttccgtgaagctcgtgatgtttttgcccaagtgagagaggcaacagcagatatc
agtgatgtctggctgaatttggctcatatctacgtagaacagaaacagtacatcagtgct
gtgcagatgtatgaaaactgcctcagaaagttctataagcatcaaaatactgaagtgttg
ttatatttggcccgggcactcttcaaatgtggcaaattacaggaatgcaagcagactttg
ttaaaggccaggcatgtagcgccaagtgatacagtccttatgtttaatgtggctttagtg
ctacaaagactggccacctctgtcctgaaggatgaaaaaagtaatctaaaggaggtgctt
aacgctgtgaaagaactggagctagcccacaggtacttcagttacttgagtaaagtaggt
gataagatgagatttgacttggcacttgctgctacggaagccaggcagtgctctgactta
ctgagtcaagcccagtatcacgtggctcgggcacgcaagcaggatgaagaagagagggag
ctgcgtgccaagcaagagcaagaaaaggagctgcttcgccaaaaactacttaaagaacag
gaagagaagcgcctaagagaaaaagaagaacagaagaaacttctggaacaaagagctcaa
tatgtggaaaaaaccaagaatattctgatgttcactggtgaagtagaaggatcaaaggag
aaaaaacgtggtggtggtggaggcaggcgttccaagaaaggagcaggggaatttgatgag
ttcgtcaacgatgacagtgatgaagatctgcccatatctagaaagaagaagaagaggaag
ggcagtggcagtgaacaagatggggaagaagaggagggtgagagaaagaagaagaagagg
aggagaccccagaaggcagatgaggggactgatgatgaagaacatgaaaacggtccaaga
cctaaaaaacgacgtccacccaaagcagaaaaaaagaaggctcccaaaccagaacgtttg
cctccttcaatgaaaggaaagatcaaatcaaaagccatcatttcatcaagcgatgattct
tctgatgaggataaactcaaaattgctgatgatgggcatgctaggaatagcaacagtgat
tctgatgatggcgaacgacagcacagtaaacgcatcatttccgatagtgattctgataat
agaaacaaatctggtagtgaggcaggtagtccaagaaggtcgcatgtccgtccatctgag
gaagattctgacagtgataggtcgcctagaaaaaggaggcggtcagattcagagcactct
gacaatgagtcggtgcagtcgggaagaagtcgttctggtggttcagaaaatgaatctcgc
ccagcttctcacagtgctgactcagacagagattctgagagaggaggatcagacaacgag
ggttctggcagagcatctggtaatgaatctgaaccagaaggatccaatgatgaggggtct
gaaggtggttcagatgatagtgattag
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integrated database retrieval system
