Cuculus canorus (common cuckoo): 104061850
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Entry
104061850 CDS
T08597
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104061850 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cuca01009
]
104061850 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cuca04515
]
104061850 (PCDH20)
Protein phosphatases and associated proteins [BR:
cuca01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104061850 (PCDH20)
Cell adhesion molecules [BR:
cuca04515
]
Cadherins
Protocadherins
104061850 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
104061850
NCBI-ProteinID:
XP_053912876
LinkDB
All DBs
Position
1:complement(36770322..36776959)
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AA seq
915 aa
AA seq
DB search
MGIPGGRGSSSARGSRQHLLLFLLFVGPFNCFASYSRATELFYSLNEGLPAGVLIGSLAR
DLRLPTTDGQHPAALQPPLSFTLASHGLGGQYVQLDNRSGELHTSAVEIDREALCVESSG
ATVFGGAAAVSSSSLSPESCLLLLDVLVLPQEYFRLVKVKIAIRDVNDNAPHFPVPHICL
SVPENAPVNTRLAIEHPALDPDVGTNGVQTYRLQDNYGVFTLDVEENESGERTPYLIVMG
ALDREAREEYVTVIVAEDGGTPPLVGSATLTIGISDINDNCPQFSDAQLNVTLYGNSTLG
THVATVHAIDMDLGSNAEITYSYSQKVPQPSRDLFHLDESIGTITLSSKVDGDAPRLHRL
IVLGNGPGCIPAVITVLVTIIKVMMRPPEIVPRFIANEVEGVVYLKELEPINTPIAFFTI
KDPDEKYEVNCYLDGDGPFRLSPYKPYNNEYLLETTKPLDYETQQLYEISVVAWNSEGFH
VTKIIKVHVLDDNDNSPVFSQQLIELSIEENNVPNAFLTKLHATDADSGERGQVSYFLGP
DAPSYFSLDKISGVLTVSTQLDREEKEKYRYTVKAVDSGFPPRESIATVTITVLDKNDNS
PRFINKDFSFFVPENFPGFGEIGVISVTDADAGQNGWVALSVLNGSDIFVIDTGKGVLRA
KVSLDREQQSSYILWIEAVDGGDPALSSTAKITILLLDINDNPPLVLFPQSNMSYLLVLP
STLPGSPITEVYAVDKDTGMNAVIAYSIIGRRGPRPESFRIDPKTGNITLEESLMQNDYG
LYRLLVKVSDHGYPEPLHSTVMVNLFVNDTVSNESYIESLLRKEPDISIEEKQPQISIEP
THKKIESASCMPMLVALSIISLGSITLVTGMGIYICLSRGKKHHRADENLEVQIPLNGRI
NLHMLEKKPVEISNI
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggggatcccgggcgggcgcggcagcagctccgcccgcggcagccggcagcacttgctc
ctctttctcctcttcgttggacctttcaactgttttgccagttacagccgtgccaccgag
ctcttctacagcctcaacgagggtcttcctgctggggtgctcatcggcagcttggcccgt
gacttacggctgccaacaactgatgggcagcatcctgcagccctccaaccccctctgtcc
ttcaccttggcctcccatggtttggggggacagtatgtgcagctggacaaccgctctgga
gagctgcacacctcagccgtggagattgaccgagaagctctgtgtgtggaaagcagtggg
gccacggtctttggaggagcagctgctgtctcatcctcctcactctcacctgagtcatgc
ctgctgctcctggatgtgctggtactgccgcaggagtacttccgcctggtgaaggtaaaa
attgctatccgtgatgtcaacgacaatgcgccccacttccctgtcccccacatctgcctc
tcagtgcccgagaatgcacctgtaaacacccgcctggctatcgagcaccctgcccttgat
cccgacgtgggcaccaacggtgtccagacctaccgccttcaagataactatggtgtcttc
accctggatgtagaggagaatgagagtggggagaggactccgtacctgattgtcatggga
gctctggacagggaggcacgggaggagtatgtcacagtcatagttgctgaggatgggggg
actcctccacttgtgggcagtgccactctcactattgggatcagcgacatcaatgacaac
tgcccccagttcagtgacgcacagctcaatgtcactctttatgggaattccactctaggg
acgcacgtggccactgtccatgcaatagacatggaccttggatccaatgctgagatcacc
tactcctacagccagaaagtcccccagccatccagagacttgttccatctggatgaaagt
ataggaactatcacactctccagtaaagttgatggggatgctccaaggctccacagactg
atcgtattgggcaacggtcctggttgtatccctgctgtgatcacagtcctagtgaccatc
atcaaagtcatgatgagaccacctgaaattgtccctcgtttcatagctaatgaagtggaa
ggggtggtgtacttaaaggaactggagcctatcaacacaccaatagcattttttaccatc
aaggaccctgatgaaaaatacgaagtcaattgttatttggatggtgatgggcctttcagg
ctttcaccatacaagccatacaataacgaatacctattagagaccacaaagcctttggac
tatgagacacagcagctgtatgaaatctctgtagttgcctggaactctgaaggatttcat
gttaccaaaataatcaaagtacatgttctggacgacaacgacaactcgccagttttctct
caacagctgatagagttatccattgaggagaacaatgttcccaatgctttcttgaccaaa
ctgcatgctacagatgctgacagtggagaaagagggcaagtgtcatattttttagggcct
gatgccccttcctatttttctttagataaaatctcaggagttcttacagtttcaacccaa
ctggacagagaagaaaaagagaaatacagatatactgtcaaagcagtagattctgggttt
cctccgagagaatcaatagcaactgtcaccatcactgtattggataaaaatgataatagt
ccaagatttatcaataaggatttcagcttttttgtgccagaaaactttccaggtttcggt
gaaattggagttataagtgtcacagatgctgatgcagggcagaatggatgggttgccctt
tcagttctgaatggaagtgatatttttgtcatagatactgggaaaggagttttgagagct
aaagtctccctagacagggagcagcaaagctcctacattctgtggattgaagcagttgat
ggtggtgatcctgccctctcctctactgcaaaaataactattcttcttttggacataaat
gataacccccctttggtcttgtttcctcaatctaatatgtcttatttgttggtccttcct
tctacccttcctgggtctcccatcactgaggtctatgctgttgataaggacactggcatg
aatgcagtcatagcttacagcatcataggaagaagaggccctcgaccagagtcatttagg
attgaccctaaaactggtaatatcaccttggaagagtcactgatgcaaaatgactatggc
ctctaccgtctgcttgtgaaagttagtgatcacggctatccagaacctctccattccact
gtcatggtgaacctttttgtcaatgacactgttagcaatgagagctacatcgaaagtttg
ttaagaaaggagcctgatatcagtatagaggaaaagcagccacaaatatccatagagcct
acacataaaaaaatagagtcggcatcctgcatgcctatgttggtagctctgtcaataata
agcttgggttcaatcactttagtaacagggatgggcatttacatctgtttaagtagagga
aaaaagcatcacagagcagatgaaaacttggaagtacaaatcccattaaatggaagaatt
aacctgcacatgttggagaagaaaccagtggagatttctaacatctga
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