Cuculus canorus (common cuckoo): 104061903
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Entry
104061903 CDS
T08597
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104061903 (HELZ)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
104061903 (HELZ)
3'-5' decay
Other 3'-5' decay factors
104061903 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
UvrD-helicase
AAA_30
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_16
AAA_7
Bac_DnaA
AAA_5
Mg_chelatase
Motif
Other DBs
NCBI-GeneID:
104061903
NCBI-ProteinID:
XP_053939128
LinkDB
All DBs
Position
18:3950064..4037855
Genome browser
AA seq
1942 aa
AA seq
DB search
MADRRPEKSCEQACESLKQQDYEVAVKHCTEALLSLSHYPPAHLPEACQAEIDRIKIETL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAAGKVPSGYHVEDVEEGSRDGWQFRPPPRGVTSSEEY
TLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLIE
KWMNSLSPEKVLSECVEGVRVEHNPELSVTVTTKKSHQTWTFALTCKPARMLYRVALLYD
AHRPHFSIVAISAGDSTTQVSQEVPENCQEWIGGKMVQNGIDHYIYKVSIAFNTEIFGTF
RQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVEFEPNET
TELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNIK
VQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVTK
EKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPLC
EMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQL
PPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQ
LDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPL
TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV
FRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHGI
TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRHQHSANTTKQQQSPPKGKVHHHNQNDH
FPPDGIVQPNPSVLIGNPIRAYTPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNMVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHHSPV
SLGQQQQLQHPDKEQHEQNRNGKSENTAGPEINKIRTPEKKPVEPKQVDLEANCQNRSPE
SRSSVGYPNAKFHRKDNLNPRQLNLHLTPPHSQYAVPNRHFQHMSQIPRQPYPLQQQQNL
LSQQQHHLPEQQNQMPLQPSQVVQQHNHLNQQPPQPSQLSPAYQAGPSQSFFNNPIPHRP
HSPAVDAVISEQHPPPMLQEVNNPLRPIAQHNPVLPAHLNNFIEENPSGMPLGDTLDRMH
GNVALETIRQQQQARLQQWNEHNAFLSQGTIPYQHHHHPHLPHLPQQPIGLHQQQQVRAN
WKLASNTEDETEATYSRFQDLLRELSHRDQSESRDLTEMPPPQSRLLQYRQVQPRSPPAL
PSLSCNSNHSGHFPNFSENNRDIEIPSNAAFQQHLPQIYNPPFSMPSEHITPSPLKYLQP
DGSWTYANLQQNHLMGQGFHYGIPPLPHRSQQNPFIQIQNHQHAVGQEPFHPLTSRAVSA
SSLHSLEEYEPRGPGRPLYQRRISSSSVQACSEELSTPQESLGQCKELQDHSNQSSFNYS
SPELWVNSSSSAPYPNIPCNGANRAVPPRELLAPPKTVKPPEEHLKAENIQLSNSFNYSV
LQHLGQFPPLMPNKQIVESNSNSQQNAAGSKPVMSYASALRAPPKPKPPPEQTKKNSDPL
SLFQELSLGSSSGSNGFYSYFK
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcatgtgaatcccttaagcagcag
gattatgaagtggcagtgaagcattgcacagaggctctcctttccctcagccattacccc
ccagctcacctcccggaggcatgccaggcagaaatcgaccgcatcaaaatcgagactctt
ctgtatagaattgcttcctttttacaacttaaaaagtatgggcaagcagatgaagactgt
aggcatgtgctgggagaggggctggccaagggagatggatctttccgtgcagtgctctgc
tgcatgcatcttaaagggaagctgcaaattgtgtctaatgttctctccaaatcactgatg
ggtgaatcactgaacgggatggtaactaaagatctgacacgactgaaaacacttcttgct
gaaacagaggcagctggcaaagtaccatcaggatatcatgtagaagatgtagaagaagga
tcccgggatggctggcagttccgccccccacccaggggagtcacgagcagtgaagaatat
actctgtgtaaaagatttttagagcaagggatctgcaggtacggtgcacagtgtacttca
gcacattcccaggaagaactaacagaatggcaaaaacgatatgcttcccgcttgatcaga
ttaaaacaacagaaggaaaacaaacagtgttcgggcagttatatggaaaccttgattgag
aaatggatgaattcgttatctcctgagaaagtgcttagtgaatgtgttgaaggagtgaga
gtagaacataatcctgagctatctgtaactgtcaccaccaaaaagtctcatcagacgtgg
acatttgctctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttatgat
gcccatcgtccacattttagtattgttgcaatatctgctggagacagcactacccaggta
tcacaagaagttccagaaaactgtcaggaatggataggaggaaaaatggtccagaacgga
atagaccattatatttacaaagtcagtatagcctttaacacagaaatctttggaactttt
cgtcaaactgttgtgtttgattttggattagaaccagtcctcatgcaacgagtaatgatt
gatgctgcttcaactgaagatcttgaatacctgatgcatgcacggcaacagctactaacc
acagcgaagcgttgggattctacttctaagactattgtagaatttgagcctaatgaaact
actgaattggagaagagccttcttaccagataccaaatccctctctctgctgaccagctc
tttacacagtctgtcctggacaaatcattgaccaagaccaactatcagtcacggcttcat
gatctcctttacatagaggaaatagcgcagtataaggaagttagcaagttcaacataaaa
gtgcaattgcagattgtagcaagcttcatgctcactggtgtttctggaggtgcgaagtat
gctcaaaatggacaactttttggccgctttaagctcactgagacactttcggaagacact
ttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgcctgtcactaaa
gagaagtcagcgcagacccaaggaaccaaagagaaggtttatgaagcagctattgaggag
aaaacaaaggattatatcttcttgagggtatccagggaatgctgtgaagaacttaacctt
cgggcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttgcccctctgt
gaaatgcattatgccttggacaggattaaggacaacagtattttgtttccagatgtcagc
atgactcccaccataccctggagtcccaacagacaatgggatgagcagttggaccctcga
ctaaatgctaagcagaaagaggctgttctggctatcactactccactttccatacaactg
cctcctgttcttatcatcggtccctatgggacaggaaaaacattcactctggctcaggca
gtcaagcacatactccagcaacaggatactagcaggattctcatttgcacccattctaat
agtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaatccc
caggcaagacctctcagggtatatttcagaaatcgctgggtgaagactgtccacccagtt
gtgcatcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaagaa
gacattcttaagcagcgagtagtagttgttactttaaatacatcacagtatctatgtcaa
ctggaccttgaaccagggttttttacacacattctgttagatgaagctgcgcaagctatg
gagtgtgaaactattatgcctctagcattagcaaataaaaacacaagaattgtcttggct
ggagaccatatgcagctcagtccttttgtctacagtgaatttgccagggaaagaaacctt
catgtttccttgcttgatcggctctatgagcactaccctgcagaattcccatgcaggatc
ttgctgtgtgagaactatcgctcccatgaagctatcatcaattatacatctgaacttttc
tatgaaggcaaattgatggcaagtggaaagcagccagcacacaaagatttctaccctttg
actttcttcacagcacgtggagaagatgtgcaagagaaaaatagtacagctttttataat
aatgcagaggtgtttgaagtagtagagcgtgttgaagaattgagaagaaaatggcctgtt
gcctggggcaagttggacgatggcagtataggtgtcgtaacaccgtatgctgatcaagtg
ttcagaattcgggctgagcttcggaaaaaaagactgtcagatgtcagtgtggagagagtg
ctaaatgttcagggaaaacagttcagagttttgtttctcagcacagtacggacacggcat
acgtgcaaacataagcaaacaccaattaaaaggaaagagcagttactggaggattcaaca
gaagacttggattatggttttctgtctaattacaaacttctcaacactgccattacaaga
gcacaatccttggtagctgtggtgggagatccaattgctttgtgttccattggaagatgc
aggaaattttgggaaaggtttattgccctgtgtcatgagaatgaaagtctccatggtatc
acatttgaacagatcaaagctcagttggaagctttggagttaaagaaaacttacgtgttg
aacccactggctcccgagtttatcccccgagcgcttcggcatcaacattcagcgaatacc
actaaacagcaacagtcaccaccaaagggcaaggtccatcatcacaaccagaacgaccat
ttcccacctgatggtattgtccagcccaatccttctgttctaattggaaatcctatccga
gcctatactcctccccctcctcctttgggacctcaccccaatctggggaaatctccaagt
cctgttcaaaggatagatccacacactgggacaagtattctatatgtacctgctgtctat
ggaggaaatatggtcatgtctgtgcctttgcctgtaccgtggacggggtatcagggtagg
tttgcagttgaccctcgaatcattactcatcaagcagctatggcatataatatgaacctg
ttacaggcacatgggcgtgggtctcctataccttacggcctgggacatcactcacctgtt
agcctaggacagcagcagcagcttcagcatccagacaaggagcaacatgaacaaaatcga
aatggtaaaagtgaaaacactgctggacctgaaatcaataaaattcgaacacctgagaag
aaacctgtggaacccaagcaggttgacttagaagcaaattgtcagaatagaagcccagag
tcacgttccagtgttggttatcctaacgctaaatttcatcgcaaagataatcttaacccc
aggcagctgaatctccatctcaccccaccccactctcagtatgcagttcccaatcgccac
ttccagcacatgtcacagataccaaggcagccatatcctctgcaacagcagcaaaacctt
ttaagtcaacaacagcatcatttgcctgaacaacaaaaccaaatgccactccagccaagc
caggtagttcagcagcataatcatttgaatcagcagcctccacaaccttcgcagctttcc
cctgcttaccaggcaggccccagccagtctttttttaataatccaattccccaccgaccg
cattctcctgctgtagatgctgtgatttcagaacaacaccccccacctatgttacaagaa
gtcaataatcctttgaggcctattgcacagcacaaccccgttctgccagcccacttgaac
aacttcattgaagagaatccatcaggaatgcccttaggggacactttagatcgtatgcat
ggaaatgtagctttggaaacaataaggcagcaacaacaagccaggttacagcaatggaat
gaacataatgcctttctcagtcaaggcactattccatatcaacaccatcaccatcctcat
ctaccacatcttcctcagcaaccaattggattgcatcaacagcagcaagttagggcaaac
tggaaacttgccagtaatacagaagatgaaacagaggcaacatattcaagattccaggat
ttgctcagagagctgtcacaccgtgatcaaagtgaaagccgggacttaactgaaatgcca
ccccctcagtcaagactgttgcaatacagacaagttcagcccagaagcccaccagctctc
ccttctctttcctgcaactctaaccacagcggtcactttcctaacttctctgaaaacaac
agagacattgaaatacccagtaacgcagcatttcagcagcatctaccccaaatatacaat
ccccctttctcaatgccatctgaacatataaccccatctcccttgaaatacctgcaacct
gatggatcgtggacttacgctaacctacagcagaatcacctcatggggcagggctttcat
tacggtatacctccgttgccccataggtcgcaacaaaacccttttatacaaatacaaaac
catcagcatgcggtcggtcaggagccatttcatccactcacatctcgagcagtatctgct
tcttcgctccacagcttagaagagtatgagccgagaggaccaggcaggccgttgtaccaa
agaagaatttcctctagttcagtccaggcttgttctgaagaattaagcactcctcaagaa
agtcttggtcagtgtaaagagcttcaggaccacagtaaccagtcatctttcaactattca
tcacccgagttgtgggtaaactcctcctcatctgccccgtatccaaacattccatgcaac
ggagccaacagagcagttccaccccgggagttgttagctccaccgaagacggtcaagccc
ccagaggaacacctgaaggctgaaaacatccagctgtccaattccttcaactacagcgtg
ctgcagcatctcggccagttccccccgctcatgcccaacaagcagatcgtcgagtccaac
agcaacagccagcagaacgctgctgggagcaagcctgtcatgtcctacgcaagtgctctg
cgggctccgccaaagcccaaacctcctcctgagcagacaaaaaagaatagcgaccctttg
tctttgtttcaggaacttagcctaggtagttcatcaggtagcaacggcttttactcctat
tttaaataa
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integrated database retrieval system
