Cuculus canorus (common cuckoo): 104062446
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Entry
104062446 CDS
T08597
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104062446 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104062446 (COL11A1)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104062446 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
104062446
NCBI-ProteinID:
XP_053929343
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All DBs
Position
8:complement(7700206..7851739)
Genome browser
AA seq
1856 aa
AA seq
DB search
MEMQRWSTRWKTKRWPRVSAGPVLIALAILLRAAEVRGAEPVDVLKALEFHNSPEGVSRT
AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPGGDFPEDFSILMTVKPKKGIQSFLLS
IYNEQGIQQIGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIVDCNKKTTKPLERSDKTVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE
HYSPDCDSPVPKAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETESVTEGPSLFEETVAQ
TEKKKAMVKKKKRTVATSSKDKTPKATTKKSEKYASKKKKSYQEATKGKLGANIIDGFQE
YSIAENDYGPQTEAPARTTEANEQNPVEEVFAEEYITGEDYDKKTEETEYGSRGVDLSES
DLLVDGDLGEYDFYEYKEYEEKPTDSTNEDFGPGVPAETDITETSVTGHGAYGEKGQKGE
PAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGLPGADGLAGPPG
TMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGRPGPVGGPGAAG
AKGESGEPGPQGPRGVQGAPGPSGKPGKRGRPGADGARGMPGEPGAKGDRGFDGLPGLPG
DKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGEAGPRGLLGPRGTPGPPGQPGIAG
VDGPPGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGKPGLPGLPGSDG
PPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKG
DMGLKGDRGEIGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGVPGLPGYPGRQG
PKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGKPGPKGTAGNDG
PPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVG
PQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGKDGPAGLRGFPG
ERGLPGGQGPAGLKGGEGPQGPPGPIGAPGERGAAGTAGPIGLPGRPGPQGPPGPAGEKG
APGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGSKGDKGENGPPG
PPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGLQGLPGPPGEKG
ENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGEAGNPGPPGESG
TPGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPAGQDG
VGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGAKGEPGAEGAPG
KTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGLPGLKGDPGSKG
EKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGPPGPPGLPGPQG
PKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPDYMLSDAGDNIL
DYSDGMEEIFGSLNSLKQDIEHMKFPMGTQNNPARTCKDLQLCHPDFPDGEYWIDPNQGC
SGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGKLLSYLDVEGNS
INMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSNDEEMSYDNNPYI
KALHDGCASRKGYAKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEVGPVCFLG
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatggtccacgaggtggaaaacgaaaaggtggccccgggtctcggca
ggacccgtgcttatcgccctcgctatccttctccgggctgcagaggtcagaggagctgag
cctgttgatgtgctaaaggcattagaatttcacaattcaccggaaggagtatcaagaaca
gcaggattttgcacaaacagaagagattcaaaaggatcggatgttgcctacagagtttca
aaaactgcacagctgagtgccccaacaaagcagctgtacccaggtggagattttccagaa
gatttctcaatattaatgacagtaaaacctaaaaagggtatccagtctttccttctgtcc
atctacaatgagcaaggaattcagcaaataggtgttgaagttggtagatcacctgtcttc
ctgtttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagctattagtgtggagaaaaaaagtgttaca
atgattgttgattgtaacaaaaaaactacaaaaccacttgaaagaagtgacaaaacagtt
gtggacaccaatggcatcactgtctttggaaccaggattctggatgaagaagtgtttgag
ggtgagatccagcagttgttgattattgctgatcccagagctgcatatgactactgtgag
cattatagcccagactgtgattccccagtgcccaaggctgctcaggctcaagaccctcaa
gttgatgagtacacaccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgagtctgtaacagagggaccctcactattcgaagagacagtagcacaa
acagagaaaaagaaagccatggtcaaaaagaagaagaggacagtggccactagctcaaag
gacaaaaccccaaaggccacaacaaaaaaatctgaaaaatatgcatccaagaagaagaaa
agttatcaagaagcaacaaaaggcaaactaggggcaaacattattgatggatttcaagag
tatagcatagctgaaaatgactatgggccccagacagaagctcccgccagaactactgaa
gcaaatgagcaaaatcctgttgaagaagtatttgctgaagaatacataactggagaggat
tatgataaaaaaactgaggaaactgaatatggaagcagaggagtagacctcagtgaatct
gatctgctggtagatggagatttaggcgaatatgatttttatgaatataaagaatatgaa
gagaaaccaactgattccactaatgaggactttggtccaggtgttcctgcagagaccgat
atcacagaaacgagcgtgactggacatggggcttatggagaaaaaggccaaaagggagaa
ccagctgtgattgaacctggtatgctcattgaaggaccaccaggaccaagaggacctgct
ggtcttacaggtcccccaggtctacaaggtccggttggtcctccaggtgaccctggtgaa
aggggtccgcctggtcgccccggtctccctggagctgatggtttggcaggtcctccaggt
accatgttaatgttgccgttccgctttggtggagatggtgagaagggcccaacaatctca
gcccaggaagctcaagcacaagctattcttcaacaagctaggattgctatgagaggtcca
cctggtcctatgggactcactggaagaccaggtcctgtgggtggacctggagcagcaggt
gctaagggtgaaagtggtgaaccaggtccccagggtcctcgtggtgttcaaggtgcccct
ggtccaagtggaaaacctggcaaaaggggccgtcctggagctgatggtgccagaggcatg
ccaggagaacctggtgcaaagggtgacagaggatttgatggtcttcctggcctccctggt
gataaaggtaacaggggagaccgtggcccacagggacctcctggcttacctggtgaagat
ggatcaagaggagaagatggggaagttggaccaagaggtctcccaggtgaagctggtccg
cggggattactgggccccagaggtacacccggtccccctggacaacctggcattgcaggt
gttgatggacctccaggcccaaaaggaaacatgggtcctcaaggggaaccaggacctcct
ggtcagcaaggaattccaggcccacaaggtcttcctggtccgcaaggtcctattggaccc
cctggtgaaaaaggacctcaaggcaagcctggccttcctggccttcctggttctgatggg
cctcctggtcatcctggcaaagagggtcagtctggagataaaggtgcattggggccacca
ggtcctcagggtccaattggctatccaggtcctcgtggtgtaaagggagctgatggtgtg
cgtggtctcaagggatccaaaggtgaaaagggtgaagatggttttccaggatttaaaggt
gacatgggccttaaaggtgaccggggagaaattggtcagccaggtccacgaggagaagat
ggtccagaaggtccaaaaggtcgagcaggtccatctggggacccaggtgctgctggtcca
gctggggaaaagggtaagcttggtgtacccggattgccagggtatccaggaagacaaggt
ccaaagggctcaactggtttcccaggattcccaggtgccaatggagagaaaggtgcaagg
ggattacatggcaaaccaggccccagaggacagcgaggaccaacaggtccaagaggctcg
aggggtcccagaggtcccactggaaaaccaggtccaaagggtactgcaggcaatgacggt
cctcccggcccaccaggtgaaaggggaccacaagggcctcaggggcctgttggattccct
ggaccaaagggacctccagggccacctggaaaagatggtttgcctgggcacccaggacag
cggggggagacaggttttcaaggaaaaactggtcctcctggtcctggtggtgttgttggc
cctcagggtcctactggtgaaactggtccaattggtgaaagaggtcatccaggtccacct
ggaccaccaggtgaacaaggcctcccaggtgctgcaggaaaagaaggcgctaagggtgat
ccaggccctcaaggcattcctgggaaggatggaccagcaggtcttcgtggtttccctgga
gagagaggcctaccaggtggtcagggtccagctggtctgaaaggaggggaaggcccacaa
ggcccacctggaccaattggtgcaccaggggaacgtggagcagcaggcactgctggccca
attggtctaccaggtcgtcctggacctcagggtcctccaggccctgcaggggagaagggt
gctcctggtgaaaaaggtcctcaaggtccagctggacgtgatggagtgcagggtcctgta
ggacttcctggtcctgctggtcctagtggttctccaggagaagacggtgacaagggtgaa
attggtgaaccgggtcagaaaggtagtaaaggtgacaagggagaaaacggtcctccgggt
ccaccaggtctccagggtcctgttggtgcccccggtatagctggtggggatggagagccg
ggcccaagaggtcagcaagggatgtttgggcaaaaaggtgatgaaggtcctcgaggcttc
cctggccctccaggccctattggcttacagggtctgcctggcccaccaggtgaaaaggga
gaaaatggtgatgtgggcccaatgggtccacctggccctcctggtccgagaggtccccag
ggtcctaatggagctgatggtcctcaaggtcccccgggctcaattggctctgtgggaggt
gttggtgaaaagggtgaacctggagaagctggcaatcccgggcctcccggagaatctgga
acacctggtccaaaaggtgaaagaggagaaaaaggtgaggctggtccacctggagcagct
ggaccacctggtgctaaaggacctccaggtgatgatgggcctaagggtaacccaggccca
gttggttttcctggtgatcctggtccccctggggaacctggtccagctggtcaagatggt
gttggtggagagaagggtgaagatggtgatcctggtcaacctggtccaccaggtccttca
ggtgaagctggcccacccggtccacctggaaaaagaggacctcctggagcaactggtgct
gaaggcagacaaggagaaaaaggtgcaaagggtgaacctggtgcagaaggggctcctggg
aagacgggtccagttggtccacaggggcctgcaggaaaacctggcccagagggtctccga
ggcattcctggccctgtgggagaacaaggtctacctggagcaccaggtcaggatggccct
ccagggcctctgggtccgcctggcttgcctggcctgaaaggagatccaggttccaaagga
gagaagggacatcctggtttgattggcctgattggacctccaggagaacagggtgaaaag
ggtgataggggtcttcctggcccacaaggatctcctggagccaagggtgatgcaggaatt
tctggtcctgctggtccactcggtccccctggtcctcctggtttacctggtccccaaggt
ccaaaaggttctaaaggatccagtggtcctgctggtcaaaagggtgacagtgggttacct
ggtccacctggtcctccaggtcctccaggtgaggtaatccagccgctgccaatccagtca
ccgaaaaagacaagaaggtcacctgattacatgttatctgatgctggtgataatattctg
gattattccgatggcatggaagagatctttggttcattgaattcactgaagcaagacatt
gaacatatgaagtttccaatgggcactcagaataatccagcgcgaacttgcaaagacttg
cagctctgccacccagacttcccagacggggaatattggattgatcctaaccagggctgt
tctggagactccttcaaagtatactgcaatttcacagcaggtggggaaacttgcatctac
ccagataagaaatctgaaggagttagaatttcatcatggccaaaggagaatccaggatct
tggtttagtgaatttaagcgaggcaaacttctttcctacttggatgttgaaggcaattcc
attaatatggttcaaatgacattccttaaactattgagtgcctctgccagacaaaatttc
acttacaactgtcatcagtctgtagcttggcatgatgcgtcgtctgacagctatgacaaa
gcactaaggttcttaggatcaaatgatgaagaaatgtcttatgacaacaatccttacatc
aaagctcttcacgacggctgtgcgtcaagaaaaggctatgcaaagacggtgatcgaaatc
aacacacccaaaatagaccaagtgcctatagttgatgtgatgatcaatgactttggtgat
cagaaccagaagtttggatttgaagtcggccctgtctgcttccttggttaa
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