Cuculus canorus (common cuckoo): 104062567 Help Entry 104062567         CDS       T08597                                  Symbol HTT Name (RefSeq) huntingtin isoform X1   KO K04533   huntingtin Organism cuca  Cuculus canorus (common cuckoo) Brite KEGG Orthology (KO) [BR:cuca00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cuca03019]     104062567 (HTT)    04131 Membrane trafficking [BR:cuca04131]     104062567 (HTT)    03029 Mitochondrial biogenesis [BR:cuca03029]     104062567 (HTT) Messenger RNA biogenesis [BR:cuca03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      104062567 (HTT) Membrane trafficking [BR:cuca04131]  Endocytosis   Rab GTPases and associated proteins    Rab associated proteins     104062567 (HTT) Mitochondrial biogenesis [BR:cuca03029]  Mitochondrial quality control factors   Regulator of mitochondrial biogenesis    Other regulator of mitochondrial biogenesis     104062567 (HTT) SSDB OrthologParalogGFIT Motif Pfam:  Htt_C-HEAT Htt_N-HEAT Htt_bridge Htt_N-HEAT_1 HEAT HEAT_GCN1 HEAT_EF3_N Motif Other DBs NCBI-GeneID:  104062567 NCBI-ProteinID:  XP_053920516 LinkDB All DBs Position 4 Genome browser AA seq 3096 aa AA seqDB search MATMEKLMKAFESLRSFQQQQGPAAIPEEPLQRPKKELSTTKKDRVNHCLTICENIVAQS LRNSPEFQKLLGIAMELFLLCSEDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEI KKNGASRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRPEESVQETLAAAIPK IMAAFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYAWLLNV LLGLLVPVEGDHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTRKETEIAPSPEQL IQVYELTLHYTQHQDHNVVTGALELLQQLFRTPPPELLHALTAAGGITQVSVSKDDSASR NRSGSIVELIAGGGSSCSPVLTRKHKGKILLGEEEGLEDDAETRSDVSAASFAASMKDEI TGELASSSGVSTSGSVGSSAADSTGHDIITEQPRSQHTLQSDSVDLTSCDLTSTATEGEE DDVLSRSSSQISAVQSDPTMDLNDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLEGA EGQYSGMQIGQLQDEEDEAANILPDNSSESLRNSSVALQQPHLLKTMSHSRQPSDSSVDR FTSKEDAADPGDHENKPSRVKGDIGHYTDGSSAPLVHCVRLLSASFLLTGEKGALVPDRD VRVSVKALAVSCVGAAVALHPESFFSKLYKTPLEAIGEEYEEQYVSDILNYIDHGDPQIR GATAILCGTIINSILIKSRFDVEKWLLNVRSSTGNLFSLIDCIPLLQKTLKDESSVTCKM ACTAVRHCIMSLCSSSYSELGLQLIVDLLTLKNSSYWLVRTELLETLAEVDFRLVSFLEG KTERVHRGLHHYTGLLKLQERVLNDVVICLLGDEDPRVRHVAAASLIRLVPKLFYNCDQG QADPVVAVARDQSGVYLKLLMHETQPPSHFAVSTITRTYRGYNMLQSPPDVTMENNLSRV IAAIFHALTISTTRALTFGCCEGLCLLSTTFPVCTWSVGWHCGVSEPSPSDEAQKGCTIG MAGMVLSLLSSAWFPLDLSAHQDALILTGNLLAASAPKCLKNPWSAEEDSNQGAAKQEEP WPALADRTLVTLVEQLFAHLLKVINICAHVMDDLAPGPAVKAALPSLTNPPSLSPIRRKG KERESVEQASVPMSPKKGGEASPAARQTDATGPVSTSKSSSVGSFYHLPSYLKLYDVLKA THANYKVTLDLQNSNEKFGCFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFNREP TMATVCVQQLLKTLFGTNLASQYDGLSSNPNKAQGKAQRLGSSNLRPGLYHYCFMAPYTH FTQALADASLRNMVQAEQEHDASGWFDVLQKVSTQLKTSITSAAKHRADKNAIHSHIRLF EPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI VHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKR LSRQIADIILPMLAKQQMHIDSHDALGVLNTLFEILAPSSLRPVDMLLRSMFVTPKTMAS VSTVQLWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCQAINRLRCGENNVAEPE DHTEVKQAKYLPEETFSRFLLQLVGILLEDIVTKQLKVDMNEQQHTFYCQELGTLLMCLI HIFKSGVFRRITAAATRLFTGDGSDGSFYTLESLSDLVQSMIPTHPSLVLLWCQILLLVN YTNYNWWSEVHQTPKRHSLSTTKLLSPQISGDSGESDLESKRGMCNREIVRRGALILFCD YVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENL AAPTTLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPFRVLARMVDTLACRRVEMLLAANL QNSVTQLPVEELDRIQEYLQNSGLATRHQRLYSLLDRFRLMVAPDTTSPSPLVTSHPLDG EDQPALENVILDKEWYVSLVRSQCCIKSDSALLEGAELVNRIPQPDLNSFMTSKEFNLSL LAPCLSLGMNDILRDQKSNLFETARRVTLDHVSAIAQKLPASHQVFQPLLPTEPSAYWKK LSDIFGDEVLYQSMMTLCRALAQYLLLLSKLPAGLRVPPDKEDDVLKFVVMSVEAVSWHL MCDRIPLSIDLQAALDCCCLTLQQPSLWNLLASAVHVTYACSLINCIRFIIEAVAVEPGN QLLSPERKKNTSKGLTEDDVDSNTQRTKHITAACEMVAEMVECLQTVLSLGHRRNSSIPA FLTPVLKNIIISLARLPLVNSYTRVPPLVWKLGWSPKPVGDFGTVFPEIPVEFLQEKEIF KEFIYRINTLGWVSRTQFEETWATLLGVLVTQPIVMDQEENQQEEDTERTQINVLAVQAI TSLVLSAMMIPVAGNPAVSCLEQQPRNKALKALDTRFGRKLSVIRGIVEQEIQAMVSKRD NIATHHLYQAWDPVPSLSPATTGALISHEKLLLQINTEREIGDMDYNLGQVSIHSIWLGN NITPLREEEWGEDEEDENDLPAASSPPTSPINTRKHRAGVDIHSCSQFLLELYSQWILPS NPSKRTPVILISEVVRSLLAVSDLFTERNQFEMMYTTLTELRKVHPSEDEILIQYLIPAT CKAAAVLGMDKAVAEPVSRLLESTLRSTHMPSRIGALHGILYILECDLLDETAKQLIPII SEYLLSNLRGVAHCVNIHNQQHILVMCATAFYLIENYPLDVGPEFSAGIIQMCGVMVSGS DESMPSVIYHCVLRGLERLLLSEQLSRLDSESLVKLSVDRVNVQSPHRAMAALGLMLTCM YTGKEKISPSRTTDTNPTAPDSESVIVAMERVSVLFDRIRKGFPFEARVVARILPQFLDD FFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQR TPVAMAMWSLSCFFVSASTSQWISAILPHVISRMGKSEQIDVNIFCLVAIDFYRHQIDEE LDRRAFQSVFEVVASPGTPYHRLLSCLQNVHKVTAC NT seq 9291 nt NT seq  +upstreamnt  +downstreamnt atggccacgatggagaagcttatgaaggctttcgagtcgctgcggtccttccagcagcag cagggcccggccgccatccccgaggagccactccagagaccaaagaaagaactttcaact accaagaaagatcgagtgaatcattgcctaacgatatgtgaaaacatagttgctcagtct ttaagaaattctccagaatttcagaaactgctggggatcgctatggaactcttcctgctt tgcagtgaagatgcagaatctgatgtccgaatggttgctgatgaatgccttaacaaagtt attaaagctttgatggattccaatcttcctaggttgcaattggaactatataaagaaatt aaaaagaatggtgcttccagaagtctgcgtgctgcactctggagatttgctgagcttgct catctagttcgacctcaaaaatgcaggccatacttagtgaaccttttgccctgtttaaca cgaataagtaagagacctgaagaatcggtacaagagacgctagctgcggcgataccaaaa atcatggcagcgtttggcaattttgcaaacgacaatgagattaaggttttattgaaggct ttcatagctaatcttaaatccagttcccctactatccgtcgaacggctgcaggatcagca gtaagcatctgtcaacactcgcgaagaacgcaatacttttatgcctggttgttgaacgta cttttaggcttgttggttcctgtagaaggtgatcaccctactctcttaattctgggtgtt ttacttacactaaggtatctcatacctttattgcaacaacaagtaaaggataccagcctg aaaggcagttttggtgtaacaagaaaagaaacagagatcgcaccttcaccagagcaactt atacaggtttatgaactgactctgcattacacccagcatcaggaccataatgttgtgact ggagctttagaattgctacaacagctctttagaacgccaccacctgaacttctccatgcc ctgaccgctgcagggggcattacacaggtcagtgtatccaaagatgactctgcgagcagg aaccgcagtgggagcatagtggaacttatagctggaggggggtcttcatgcagccctgtt cttacgagaaagcataaaggtaaaatacttctcggtgaagaagagggtttggaagatgat gctgaaaccagatcagatgttagtgctgcatcatttgcagcttctatgaaagacgagatc actggggaactagcttcttcgtcaggtgtatcaacatctgggtctgtagggagctcagct gctgattctactggacacgatatcattactgagcagccacgttctcagcatacgttgcag tcagactctgtagacctgacaagctgtgatttgacaagtacggctactgaaggggaagag gatgatgtgcttagtcgaagctccagccagatcagtgctgtccagtcagatcccactatg gacttgaatgatggtacacaggcttcctcaccaattagtgatagctctcagactactaca gaaggtccagactctgctgtaaccccttcggacagttctgaaattgttttggaaggtgct gagggacagtattcaggaatgcaaattgggcagctgcaggatgaggaagatgaggctgca aatattctcccagacaattcatcagagtctctcagaaattcttctgttgcgcttcagcag cctcacctgttgaaaactatgagccatagtaggcagccttctgatagcagcgtagataga tttacatcaaaagaagatgcagcagatcctggtgatcatgaaaataagccctccagggta aagggagacataggtcactatactgatggaagctctgctcctttggtgcactgcgtcaga cttctgtcagcctctttcctacttacgggggagaaaggagctttagttcctgatagagat gtgagagtcagcgtaaaagccctggcagtaagttgtgttggagcagccgttgcacttcac cccgagtctttcttcagcaaactgtataaaactccccttgaagcaataggagaagagtat gaggagcagtatgtatcagatattctgaactacattgaccatggagatccccagattaga ggagctactgccattctgtgcggaacaattatcaactccattctgattaaatcccgcttt gatgtggaaaaatggctattaaatgtcagaagctcaacaggaaatctcttttccttgata gactgcatacctctgttacagaaaacactgaaagatgagtcctctgttacgtgcaaaatg gcgtgtacagctgtgaggcactgcatcatgagcctgtgtagtagcagttacagtgaacta ggtttacaattaattgttgacctccttacgctgaagaatagctcatattggttagtaagg acggaacttctggaaacacttgcagaggtagattttcggctagtcagcttcttggaagga aaaactgagagagtgcacaggggtcttcatcattatactggtctcctgaagcttcaggag agagtgcttaatgatgttgtaatatgtctgcttggagatgaagatccaagagtcaggcac gtagccgcagcttcgttaataaggcttgttccaaagctgttttataactgtgatcaagga caagctgatccagttgtagcagtagcaagagaccaaagtggtgtctacctgaaactgcta atgcatgaaacacagcctccatctcactttgcagtgagcactatcaccagaacgtacaga ggttacaatatgctgcaaagtccaccagatgtcactatggaaaacaatctctcaagggtt attgcagcaattttccatgcattgacaatatccactacaagagcacttacattcggctgc tgtgaaggtttgtgtcttctctccacaacatttccggtttgcacctggagtgtgggatgg cactgtggtgtttccgagccaagtccatcagatgaagctcagaagggctgcaccattgga atggctggcatggtcctgtctctcctttcatcagcgtggttcccactggacctctctgca catcaggatgctttgattttgactgggaacttgcttgcagcaagtgctcccaaatgctta aagaatccctggagtgctgaagaagattcaaaccaaggtgctgcaaagcaggaggaaccc tggccggctctggcggatcgaactcttgttactttagtagagcagctctttgctcatctg ctgaaggtcattaacatttgtgctcatgtaatggatgatcttgctcctggcccagcagta aaggcagcattaccttctctcacaaacccaccttctcttagtccaattcggaggaagggg aaggagagggagtctgttgaacaggcatctgtgccaatgagccctaaaaagggtggtgaa gcaagtccagctgctaggcaaactgatgctactggacccgtttcaacaagtaaatcatct tcagtaggaagcttttatcatcttccatcgtatctgaagttgtacgatgtcttgaaagca acccatgctaattataaggttactttggatctccagaatagtaatgaaaagtttggatgt ttcttacgatctgccttagatgttctgtctcaaatcttggaacttgctactcttcaagat attggaaagtgtgtagaagaaattttgggatacctaaaatcatgtttcaacagagaacca acaatggcaacagtttgtgtgcagcagttattgaaaacattgtttgggacaaatctggct tctcagtacgatggcttgtcttcaaaccccaataaagctcaaggcaaagctcaacgctta ggttcttccaatttgagacctggtctctatcattattgcttcatggcaccgtatacacat tttacacaggccctcgctgatgctagtctcaggaacatggttcaggctgagcaggaacat gatgcttcaggatggtttgatgtgctgcaaaaagtttctacacagctgaaaactagcatt accagtgcagcaaaacatcgtgctgataagaatgctattcacagtcacattcgtttgttt gaaccccttgtcataaaagcattgaaacaatatactacgacgacgtcagtacagctgcag agacaagtgttagacttgcttgctcaactggttcagctacgagttaactactgtcttctg gattcggatcaggtgtttattggatttgtgctaaagcagtttgaatacattgaagtagga cagttcagggagtctgaagcaatcattcccaatatcttttttttcctggtgttgctgtct tatgagcggtatcattccaaacagataatcgggattcctaagataattcagctgtgtgat ggtatcatggccagtgggaggaaagctgttacacatgcaataccagctctgcaacccatt gttcatgacctctttgtgttaagaggaacaaataaagctgatgctggaaaagagttggaa acacaaaaggaagtggtagtgtcaatgctgctaagacttattcagtaccatcaggtgcta gaaatgttcatcttagtgttgcaacagtgtcataaagaaaatgaagacaaatggaaaaga ttgtcccggcagatagctgacattattcttccaatgcttgcaaagcaacagatgcacata gactctcatgatgctctgggagtactgaatactttgtttgaaattctggctccttcatcc cttcgccctgtggacatgcttttaaggagtatgtttgttacacctaaaacaatggcatca gtgagtactgtccagctatggatttctggaattttagctatccttagagttctgatttca cagtcaactgaagacatcgttctatcccgtatacaagagctttccttctcaccgtatttg atttcatgtcaagcaattaacagactgagatgtggagaaaataatgtagctgaaccagag gatcacactgaggttaaacaggctaaatatctgcctgaagagactttttctaggttctta ttgcagctggttggcattctgctggaagatattgttaccaaacaattgaaagtggacatg aatgagcagcaacatactttctactgccaggagctaggcacactgcttatgtgcttaata catatcttcaaatcaggggtgtttagaagaatcacagctgcagccaccagactttttaca ggagatggatctgatggtagtttctatacccttgaaagtttgagtgaccttgttcagtct atgattcccacacatccttctttagttctcctctggtgtcaaatcctgcttcttgtcaat tacaccaactacaactggtggtcagaagtgcatcagactccaaagagacacagtctttct actactaaattgctcagccctcagatatctggagacagtggtgaatcggatttggaatct aaacgtggcatgtgcaatcgtgagatagtgagaagaggagcgctcattcttttttgtgac tatgtttgtcaaaacctacatgattcagaacacttgacctggcttattgtgaatcatgtt caagacttgattaatctgtcccatgagcctccagtacaagactttattagcgctgttcac aggaattcagcagccagtggacttttcatccaggccattcaatcacgatgtgagaatctt gcagctcccacaactctgaagaagactttacagtgtttggagggaatacatctcagccag tctggggctgtcttgacattatatgttgataagcttctgtgtactccattccgtgtgctt gctcgcatggttgacacactggcttgccgtcgggtagaaatgcttttggctgcaaattta cagaacagcgttactcagttaccagttgaagaactggatagaattcaggaataccttcaa aacagtggattagcaacgagacaccaaagactttactcgctcttggataggtttcgtctt atggtagcgccagacacaactagtccttcacctttggttacctcacacccactagatgga gaagaccaaccagctttagagaatgtaattctagacaaagagtggtatgtgtcactagtg aggtcacagtgttgcatcaagtctgactcagcactgctagaaggcgcagagctggtaaat aggattcctcagcctgacctgaactccttcatgaccagcaaggagttcaatctaagcttg ttagcaccttgtttaagccttggcatgaatgatatcttaagagatcagaagagtaacctc tttgaaacagcacggagggtaactctggatcatgtgtctgccattgcacaaaagcttcct gccagccaccaggtttttcaaccactgttgccaactgagccatcagcttactggaaaaaa ctaagcgatatctttggagatgaggtgctgtatcagtctatgatgacactttgtcgtgca ctggctcagtatttgttgttactctcaaaactaccagctggtctccgtgttcctccagac aaagaggatgatgtcctgaaatttgtagttatgtcagtagaggcagtatcgtggcattta atgtgtgaccgaattccattaagtatagatcttcaggctgctctggattgttgctgtctg acattacagcagcctagtctgtggaatttactggcttctgccgttcatgtgacatatgct tgctccttaattaattgcatcagatttatcatagaagcagttgcggttgaacctggtaat caactccttagtcctgaaagaaagaagaatacttcaaaaggcttaactgaagatgatgtt gattcaaatacccagagaactaaacacattactgcagcttgtgaaatggtagctgagatg gtggaatgcttacagactgtcttgtcactggggcacagaagaaacagcagtatcccagcg tttcttactcctgtcctcaagaatatcatcatcagtttagcaaggctgcctctagtgaac agttatacaagagtgcctcccttggtctggaagttaggctggtcaccaaaaccagtgggt gactttggcacagtttttcctgaaatcccagtagaatttcttcaagaaaaagaaattttt aaggagttcatctatcgcatcaatacacttggatgggtcagccgtactcagtttgaagag acatgggctactttgcttggtgtgcttgtaactcagcctattgtaatggaccaagaggag aaccagcaagaggaagatacagagaggacccaaattaatgttcttgcggtacaagccata acgtccttggtgctgagtgcaatgatgatacctgttgcaggcaacccagcagtaagctgt ttggaacagcagccccgcaacaaagctttgaaagcactggacacaaggtttgggaggaag ctaagtgttatcaggggaattgttgaacaggaaatccaagcaatggtctctaagagagat aatattgctactcatcacttataccaggcttgggacccggttccatcactttctcctgct actacaggtgctcttatcagccatgaaaaactcttactgcagatcaatactgaacgagaa ataggagacatggattataatctgggacaggtctctatacattccatatggttaggaaac aatatcactccgttgagagaggaagagtggggtgaggatgaagaagatgagaatgatcta cccgctgcttcctcaccaccaacctctcctattaataccaggaaacaccgggctggtgta gatatacattcttgttctcagttcttgcttgaactgtatagtcagtggatattgccatca aaccctagcaagagaacaccggtcattttgattagtgaagtggtgcgatcacttctggca gtatcagacttatttacagaaaggaatcaatttgagatgatgtatacgacgttgacagaa ttgcggaaggtgcatccatcagaagacgagattcttatacagtatttgataccagccact tgtaaagctgcagctgttcttggaatggataaagctgtggctgaaccagtgagtcgattg ctggaatcaaccttaagaagcacccatatgccaagtcggattggagctctgcatggaatt ctttatatccttgaatgtgatttgcttgatgagacagcgaagcaactcattcctattatc agcgagtatctcctttccaatttgagaggagtagcacattgtgtgaatatccataaccaa cagcacatcttggtgatgtgcgcaactgctttctatttgatagagaattacccgcttgat gtagggcctgaattctctgcaggaattatacagatgtgtggagtcatggtgtctggaagc gatgaatcaatgccatccgttatttatcattgtgtcctgagaggattagaacgactcctt ctttcagagcaactttctagattggatagtgaatccctagttaaactgagcgttgacaga gtgaatgtgcagagcccccacagagcaatggcagcgcttggattaatgctgacttgcatg tacacaggaaaggaaaaaatcagccccagtcgtaccacagatacaaatcctactgctcct gacagtgaatctgtgatcgtagctatggaacgagtatctgtccttttcgataggatcaga aagggatttccttttgaagctagagtagtggctcggatacttccacagttccttgatgat tttttccctccgcaagatgtaatgaataaagttattggagaatttttatccaatcagcaa ccttatccacagttcatggcgacagtagtttataaggtattccagacactacatagtact ggacagtcctcaatggtccgtgactgggtgatgctgtctctctctaatttcacacaaaga acaccagtggcaatggcaatgtggagtctttcctgtttttttgtcagtgcctccaccagt caatggatttcagcaattcttccacatgttatcagcagaatgggaaaatctgagcaaatc gatgttaacatcttctgtttggtggccatagatttttaccgacatcagatcgatgaagaa ttagaccggagggcctttcagtcggtgtttgaggtggtagcgtctccaggaaccccgtat catcgcctgctgtcttgtttgcaaaatgtccataaggtcacagcatgttga

DBGET integrated database retrieval system