Cuculus canorus (common cuckoo): 104062579
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Entry
104062579 CDS
T08597
Symbol
POLE
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03030
DNA replication
cuca03410
Base excision repair
cuca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104062579 (POLE)
03410 Base excision repair
104062579 (POLE)
03420 Nucleotide excision repair
104062579 (POLE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cuca03032
]
104062579 (POLE)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104062579 (POLE)
Enzymes [BR:
cuca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
104062579 (POLE)
DNA replication proteins [BR:
cuca03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
104062579 (POLE)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
104062579 (POLE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
APP_N
Motif
Other DBs
NCBI-GeneID:
104062579
NCBI-ProteinID:
XP_053938660
LinkDB
All DBs
Position
17:11051805..11084293
Genome browser
AA seq
2390 aa
AA seq
DB search
MVPQGPGERLLQRGRGRPPPQRRLRALPARSQLRAGRGARGEPRLRLSEPGGLPDRTPGG
ASAPHGQRRGRSSSAAGSGRRAGNPWRGVGMRRGGAEPAGARRGRRTGAAAAGREPAGAD
EAVAGRDDGPALSALKRLERSQRTDRLDALFGFERPAEPGERTGWLVNMHPTEVLDEDRR
SVSAVDYYFIEEDGSRFKVALPYKPYFYIATQKGCEREVSSFLSKKFQGKIAKLETVPKE
DLDLPNHLVGLKRNYIKLSFNTVDELVKVRKEISPAVRKNRERDQASDVYTAMLSSALSR
GSLSTEEEGASRKVANQMDNIVDMREYDVPYHVRLSIDLKIHVAHWYNVRYRGSTYPPEI
TRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYLITNREIVSEDI
EDFEFTPKPEYEGPFCVFNEPDEAHLIQRWFEHVQETKPTIIVTYNGDFFDWPFVEARAA
AHGMDMYQEIGFQKDSQGEYKASQCIHMDCLRWVKRDSYLPVGSHNLKAAAKAKLGYDPV
ELDPEEMCRMATEEPQTLATYSVSDAVATYYMYMKYVHPFIFALCTIIPMEPDEVLRKGS
GTLCEALLMVQAYHANIIFPNKQEQEFNKLTEDGHVLDSETYVGGHVEALESGVFRSDIP
CRFKMNPAAFDFLVQHVEKTLRHAIEEEEGLPLDQVTNFQEVCDEIKAKLNSLKDVPNRI
ECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGANCQRRMTWQWRGEFMP
ASRSEYHRIQQQLESEKFPPLSPDGAPRAFHELSREEQAKYEKKRLADYCRKAYKKIHVT
KVEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLSAAVETGDASEVKRCKNM
EILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGANIITQARELIEQIGRPL
ELDTDGIWCVLPNSFPENFVIKSTNAKKPKVTISYPGAMLNILVKEGFTNDQYQELQDPS
SLTYVTRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNEDGSLAELKGFEVKRRG
ELQLVKIFQSSVFEAFLKGSTLEEVYASVAKVADYWLDVLYSKAANMPDSELFELISENR
SMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRFIISKKPEGSPVTERAIPLA
IFQAEPSVRKHYLRKWLKSPSLQDFNIRAILDWDYYIERLGSTIQKIITIPAALQQVKNP
VPRVRHPDWLHKKLLEKNDVYKQKKINELFTSEGKRQILANQLPEGTPSSQIGDIEDFGA
AKTLQPLVPIANKRKRVPAAEESQQMSQYLELSQSWREILGPPPPLGTTKEERLVWLRYH
QKKWELQARQRRERRKRRRLEDSGVAADGGVVRDALSKGLGSYLRRTARSILDLPWQIVQ
IAETSQPGLFRLWAVIGRDLHCIRLSIPRVFYVNQRVPKPEEGAAYRRVNRILPRSNLVY
NLYEYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALIHLGCVCMVSRQLVRHL
EGREAETFDIEHLEMRSLAQFTYLEPGSIRHIYLYHSSQGSKALLGLFIPSQRKAAVFVL
DKVRSNQMPNLTTLFSAERSALLEKAGEELLPPDKHTFEVRAETDPKAIYRAIQRLLQGY
KDERRGPTLVAVQSNWDVKRLASGIPIIEEFPLVPIRLVDDISYSVLDWQRHAARRMIRH
YLNLDTCLSQAFEMSRYYHIPIGNLPEDISTFGSDLFFSRHLRRHNHLLWLSPTARPDLG
GKEADDNRLVMEFDERASVEINNPGCYSTVCLELDIQSLAVNTVLQSHHVNDMEGGSSMS
ISFDVIQQASLEDMVTGNQAANILASYDETALCSNTFRILKSMVVSWVKEITQYHNVYAD
NQVIHFYRWLRSPSSLLYDPALHRTLHNMMKKLFLQLVAEFKRLGSSVVYANFNRVILCT
KKRRIEDAISYMEYIINSIHSKEIFHSLTISFSHCWEFLLWMDPANYGGIKGKVDSRIHY
GEDISNRQMVEEEDSEEEEEEEAAGKEDEEEGEPNVEELLENNWNIVQFLPQAASCQSYF
LMIVSAYIVAVYHSMKEELRRNAPGSTPVKRRSTSQVSQEALGEMGAMPGMITFSQDYVA
NELTQSFFTITQKIQKKMAGSRNATEPSDLFPVLPGSYLPLNNPALEFIKYVCKVLSLDA
NVTNQVNKLRRDLLRLIEVGEFSEEAQFRDPCRSYVLPEVICRNCNFCRDLDLCKDPALS
QDGSVLPSWVCSNCQAPYDSSAIETLLVEALQKKLMAFVLQDLVCKKCHGVKDTHMPVYC
SCAGDFTLTISSQAFMEHINIFQNIAQHYSMDYLLETIEWLLSTNLQLRP
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atggtgccccaaggcccgggcgagcggctcctgcagcggggtcggggacgaccccctccc
cagcgaaggctgcgagcgctcccagcccgctcccagctgcgggcgggccgaggggcgcgt
ggggagccccggctccgcctctccgagcccggcggcctccccgaccgcaccccgggaggc
gcctccgcccctcatgggcagcgccgggggcggagttcctccgccgcgggaagcgggcgc
agagcgggaaatccttggcgcggggtcgggatgcgccggggcggcgcggagcccgcgggg
gcgcggcggggccgccggaccggggcggcggcagcggggcgagagccggcgggggctgac
gaggcagtggcgggcagggacgatggccccgcgctgtccgctctcaagcgcctggagcgc
tcgcagcgcaccgaccggttggacgcgctgttcggcttcgagcggccggcggagccgggc
gagcgcacgggatggctcgtcaacatgcacccgacagaggtattggatgaggatcggcgg
tcggtgagcgctgtggactactacttcatcgaggaggatgggagccgcttcaaggtggcc
ctgccctacaagccctacttctacattgccactcagaagggctgtgagcgagaagtgtcg
tccttcctctccaagaagttccaagggaagattgcaaagttggaaactgtccccaaagaa
gacttagacctgccaaaccacttggtgggcctgaagaggaactacatcaagctgtccttc
aacacggtggatgagttggtgaaggtgcggaaggagatctctcctgctgtgaggaaaaac
agagagcgagaccaggcaagcgatgtctacacggctatgctgtcaagcgctctgagcaga
ggcagcctgagcacggaggaggaaggtgcttccaggaaggttgccaaccagatggacaac
attgtggacatgcgggagtatgatgtaccctaccacgttcgcctctccatcgacctcaag
atccacgtggctcactggtacaacgtgcgataccgcggcagcacctacccccctgaaatc
acccgccgggacgacctcgtggagcgaccggatccggtcgtccttgcctttgacattgaa
actaccaaactccctttgaagtttcctgatgcggagacagaccagatcatgatgatctcc
tacatgattgatgggcagggctacctgatcaccaacagggagattgtctcagaggatatt
gaagacttcgagtttactcccaagccagagtacgagggtccattctgtgtctttaacgaa
ccagatgaagctcatttaatccagaggtggtttgaacatgttcaggagaccaaacccacc
atcattgtcacatacaatggagacttctttgactggccctttgtggaagcaagagcagca
gctcatggaatggatatgtatcaggaaattggatttcagaaggacagccaaggggagtac
aaagcatcccagtgcatccacatggactgtctaaggtgggtgaagagagacagttacctc
ccagtggggagtcacaacctgaaagcagcagctaaagccaaactgggttacgatccagtg
gagctggaccctgaagagatgtgccggatggctacggaggagcctcagaccctggccacc
tattcagtgtccgacgcggttgctacctattacatgtacatgaagtatgtgcaccctttc
atttttgccttgtgcaccatcattcccatggagcctgatgaggtgttaaggaagggatct
gggacgctgtgtgaagcactgctgatggttcaggcatatcacgccaacatcatcttcccc
aacaagcaggagcaggaattcaacaagcttacagaagatggtcatgtgctggactcggag
acgtacgtgggaggtcatgtggaagctctggaatctggagtcttccgcagcgacatcccc
tgccgcttcaaaatgaatcctgctgccttcgacttcctggtgcagcatgtagagaagacg
ctgcggcacgccatcgaggaggaggagggtttgccactggatcaagtcactaacttccag
gaggtttgtgatgaaatcaaggccaaactgaattccctgaaggatgttccaaacaggatc
gagtgtcccctgatctatcatcttgacgtaggagccatgtaccccaacatcattctgacc
aacaggctgcagccctcagccatggtggatgaggccacgtgtgctgcctgcgacttcaac
aagccgggggccaactgccagcgccgcatgacttggcagtggagaggagagttcatgcca
gccagccgcagtgaatatcaccgcatccagcagcagctggagtcggagaagttccctccc
ttgtcacccgatggagccccccgtgccttccacgagctctcccgggaagagcaggccaag
tatgagaaaaagcggctggcagattactgccgcaaggcatacaagaagatccacgtcacc
aaggtggaggaacgagttaccaccatctgccagcgagagaactctttctatgtggacacg
gtgcgagctttcagggatcgccgctacgagttcaaggggctgcacaaggtgtggaagaag
aagctctctgctgcggtggagacgggagatgcctctgaagtgaagcgctgcaagaacatg
gaaatcctctatgattccctgcagctggcccacaagtgcatcctcaactctttctatggc
tacgtcatgcggaaaggagctcgctggtattccatggaaatggctggcatagtttgcttc
acgggagcgaatatcatcactcaggcgagggaactgatcgagcagatcgggagacctctg
gagctggataccgatgggatttggtgtgttctacccaacagcttcccagagaattttgtc
atcaagtccaccaatgccaagaagccgaaggtcacaatctcataccctggtgccatgctg
aacatcctggtgaaggaaggcttcaccaatgatcagtaccaggaactgcaggacccctcc
tctctcacctacgtcacgcgctcggagaacagcatcttttttgaagtggatggcccctac
ctggccatgatcctcccagcttccaaggaagagggcaagaagctgaagaaaaggtacgca
gtattcaatgaggatgggtccctggccgagctgaagggattcgaggtgaagcgccgagga
gagctgcagctggtgaagatattccagtcctctgtgtttgaagcctttctgaaaggcagc
accctggaggaggtctatgcttctgtggccaaggtcgctgactactggttggatgtgctc
tacagcaaggctgccaacatgccggattcagagctgtttgagctgatctcagagaaccgt
tccatgtcgcgcaaactggaggactatggggagcagaagtccacgtccatcagcactgcc
aagcgcctggcagagttcctgggggaccagatggtgaaggatgcagggctgagctgccgt
ttcatcatttccaagaaaccagaagggtctccggtcactgagagggccatcccccttgct
atcttccaagctgagcccagcgtgcgcaaacactatctgcggaagtggctgaagagcccc
tcgctgcaggacttcaacatccgcgcaatcctggactgggactactacattgagaggctg
ggcagcaccatccagaagatcatcaccattcctgccgccctgcagcaggtgaagaaccca
gtaccacgggtccggcacccagattggctccacaagaagctcctggagaagaacgatgtt
tacaagcagaaaaaaatcaatgagctcttcacttcagaaggcaagagacagatcctcgcc
aaccagctcccggaggggacacccagctcacagatcggtgacatagaggacttcggggct
gccaagacccttcagcccctggttcccatcgcaaataagaggaagcgggtgcctgcggca
gaggaaagccaacagatgtcccagtatctggagctctcccagtcctggcgagagatcctg
ggtccacctccacccctgggcaccaccaaggaagagcggctggtgtggctgcgctaccac
cagaagaagtgggagctgcaggctcggcagcggcgggagcgacggaagaggcgacgtctg
gaggactctggggtggcagcagatggaggagtggtccgcgatgccctctccaaagggctg
ggcagctacctgcgcaggaccgcgcgcagcatcctggacctgccctggcagatcgtgcag
atcgctgagaccagccagcctgggctgttcaggctgtgggctgtgatcgggagagacctg
cactgcatcaggctgagcatcccccgcgtcttctatgtcaaccagcgtgtcccaaagcca
gaggagggagcagcctacaggagggtgaacaggatcctgccccgctcaaacctggtgtac
aacctctatgaatactccgttcctgaagacatgtaccaagagcacatcaatgaaatcaac
gctgacctctctgctccggacatcgagggagtgtatgagacccaggtgccacttctgttc
cgtgctctgatccacctgggctgcgtgtgcatggtcagcaggcagcttgtccggcacctg
gagggacgagaagctgaaacctttgacatcgagcacctggagatgcgttcactggcacag
ttcacctacttggagccaggaagcattcgccacatctacctctaccacagctcccagggc
agcaaggcactcttgggcctcttcattccctcgcagcgcaaagctgccgtctttgtgttg
gacaaggtacgcagcaatcagatgccgaatctcaccaccctcttctcggcggagcgcagc
gccttgctggagaaggcaggcgaagagctgctgcccccggacaagcataccttcgaagta
cgtgccgagactgaccccaaggccatctaccgagccatccagcggctgctgcagggctac
aaggacgagcgccggggccccacgctggttgctgtgcagtctaactgggatgtgaaacgg
ctggcgagcgggatccccatcattgaggagttccccttggtccctatccggttggtagat
gacatcagctactcggtcctggactggcagcgccacgctgcccgccgcatgatccgccac
tacctcaacttggacacctgcctttcccaggcttttgagatgagcaggtactaccacatc
cccattggcaacctccccgaggacatctccacctttggctctgacctcttcttctcacgc
cacctccgtcgtcacaaccacttgctgtggctctcgcccacagcccgcccagacctgggg
ggaaaggaggctgatgacaaccgccttgtcatggagtttgatgagagagcctccgtggag
atcaacaaccccggctgctactccacagtgtgcctggagctggacatccagagcctggct
gtaaacacggtcctgcagtcccaccatgtaaatgacatggaaggaggctccagcatgagc
atcagctttgacgtgattcagcaggcatccctagaagacatggtgacaggaaaccaagct
gccaacatcctggccagctatgacgaaaccgccctctgctccaacactttcaggatcctg
aagagcatggtggtgagctgggtgaaggagatcacgcagtaccacaacgtctacgcagac
aaccaggtcattcacttttaccgctggctccgctctccttcctccctgctctacgaccca
gccctgcaccgcacgctccacaacatgatgaagaaactcttcctgcagctggtggcagag
ttcaagcgtctgggctcctcggtggtttacgccaacttcaaccgggtcatcctgtgcacc
aagaagcggcgcattgaggatgccatcagctacatggaatacatcatcaacagcatccac
tccaaggagatcttccactctctgaccatctccttctcccactgctgggagttcctgctc
tggatggatccagcaaattatggaggtatcaagggaaaagtggattctcgcatccactat
ggggaggacatcagcaataggcagatggtagaggaagaggacagcgaggaagaggaggag
gaggaggcagcggggaaagaagacgaggaggaaggggagccaaacgtggaggagctgctg
gagaacaactggaacatcgtgcagttcctgccccaggctgcctcctgccagagctacttc
ctgatgatcgtgtctgcctacattgtggccgtgtaccacagcatgaaggaggagctgcgg
cgcaacgctcctggaagcacccctgtcaagaggaggagcaccagccaggtgtcccaggag
gcactgggggagatgggagccatgcctggcatgatcaccttctcacaggattatgtggcc
aatgagctcacccagagcttcttcaccatcactcagaagatccagaagaagatggctggg
tctcgtaatgccactgagccttcagacctattcccggtgctgcctggctcctacttgccg
ctcaacaatccggctctggaattcatcaaatatgtttgcaaggtcctctccttggatgcc
aatgtcacgaaccaggtgaacaaattgcgccgagacctgctgcgcctcatcgaggtgggc
gagttctcagaagaagcccagtttcgggacccttgccgctcctacgtgctccctgaagtc
atctgcaggaactgcaacttctgcagggacctagacctgtgcaaggaccctgccctctcc
caggatgggtcggtgctgcccagctgggtctgctccaactgccaggcaccatacgactcc
agtgccattgaaaccttgctggtggaagctctgcagaagaagctgatggcctttgtgctg
caggacctggtgtgcaagaagtgtcacggcgtgaaggacacgcatatgcctgtgtactgc
agctgcgctggagacttcaccctgaccatctcctcccaggccttcatggagcacattaac
atcttccagaacatcgcccagcactacagcatggactacctgctggaaaccatcgagtgg
ctgctgtccaccaacctccagctccggccatga
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integrated database retrieval system
