Cuculus canorus (common cuckoo): 104062628
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Entry
104062628 CDS
T08597
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca02010
ABC transporters
cuca04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
104062628 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104062628 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cuca02000
]
104062628 (ABCA1)
Transporters [BR:
cuca02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
104062628 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
104062628
NCBI-ProteinID:
XP_053909444
LinkDB
All DBs
Position
Z:complement(41978267..42071366)
Genome browser
AA seq
2262 aa
AA seq
DB search
MAFWTQLGLLLWKNFTYRRRQTFQLLIEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRYPTPGESPGIVGNFNASIVSRLFSDAKRLLLYSQQDT
SIKDVQKVLGKLRKLGNISSSDLKLRDVLIDNETFSDFLHSNVSMPLSAVQELLDAEINL
QQVVVSGYRMRLRDLCNSSTLSEFLVIQNQTVAMDSEAFICNLPKEKLLAAERAFRANLN
PLKPLQRRISFNSSLHDLSETVETLRESLGKLVKELLSMKSWSDMRQEVMFLNNVNASNS
STEIYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEEDVANFYDNSTTPYCN
ELMKNLETSPLSRIIWRALKPLLIGKILYTPDTPAIRKVMTEVNRTFQELGVFRDLGGMW
EEMSPKIWTFMESSQEMDLIRTLLKGKALWDLHLPASNWTVEDVARFLSNHPEDFEGANG
TVYTWVDAFNETDLAIQTISRFMECVNLDKLEPVATEVRLINKSLELLDERRFWAGIVFT
EIAPDSVELPQHVKYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYVWGGFAYLQDV
VEQAIIRVLTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI
VYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAGLLVLILKMGNLLPYSDPSVVF
VFLSIFGVVTILQCFLISTVFSRANLAAACGGIVYFTLYLPYVLCVAWQDYISFSLKIFA
SLLSPVAFGFGCEYFALFEEQGVGVQWDNFFESPLEEDGFSITTSAVMMLFDTFLYGVMT
WYIESVFPGQYGIPRPWYFPFTKSYWFGEEQQDRQHLHPDQKGSSEVCKEEEPVHLSLGV
SIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAFI
LGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMDQMATDV
GLPHKLKSRTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLS
SCRNSSSTVSYLKKDDSVSQSSSDAGLGSDHESDTVTIDVSAISNLITKHVSEARLVEDI
GHELTYVLPYKAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVADDSGVDAE
TSDGMLPARRNRRVFGDRQSCLRPFTEDDVFDPNDSDIDPAESRETDLLSGVDGKGSYQM
KGWKLTQQQFMALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALMFSLIVPPFGKYPSLEL
QPWMYDEQYTFISNDAPEDAGTQRLLDALLDKPGFGTRCMPGHSIPDTPCTMGQTEWTTA
SVPDSVLDVFLKGNWSMQNPSPSCECSNEKIKKMLPVCPAGAGGLPPPQREQDTADILQN
LTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGASSSLMLPPSHEVTDAIKQVK
KVLELAQGSSGDRFLNSLSSFMKGLDTKNNVKVWFNNKGWHAIASFLNVINNAILRANLQ
QGKNPSTYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQE
RVSKAKHLQFISGVKPVIYWLANFVWDMCNYIVPATLVIIIFICFQQKSYVSSSNLPVLA
LLLFLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNI
NDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVE
GVVFFLITVLIQYRFFIKPRPVYAKLPPVNDEDEDVNRERQRIISGGGQSDILEIKELTK
IYRMKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTDVTGGEAFLKGNSILS
NIQEVHQNMGYCPQFDAVNELLTGREHLEFFALLRGVPEKEVCKVGEWAIRKLGLVKYAE
KYAGNYSGGNRRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVIKEGRSVVL
TSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGANPDLKPVEEFF
GHAFPGSVLKEKHRNMLQYQLPSSPSSLARIFSILSQNKKRLHIEDYSVSQTTLDQVFVN
FAKDQSDDDHTKDLSLHKNQTVVDIAILNSFLQDEKVKESCV
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atggctttttggacacagctgggattgctgctatggaagaacttcacctatagaaggaga
cagactttccagctgctgattgaagttgcctggcctttgtttatcttcttcatcttgatc
tctgtaagactttcatatccgccctatgagcagcatgaatgtcacttcccaaacaaagct
atgccttcagcaggaaccttgccttggatacaggggatcatctgcaatgccaacaaccct
tgtttccgctacccaactcctggggaatcccctggtattgttggaaacttcaatgcctcc
attgtttcccgcctgttctcagatgccaagaggttactcttgtacagtcaacaggacacg
agtataaaggatgtccagaaggtcctgggaaaactgcgcaagttgggaaacatctctagc
tcagacttgaagcttcgggatgtcctgattgacaatgagacgttctcagactttcttcac
agtaatgtgtccatgccattgtctgcagtacaggagctactggatgcagagatcaacctc
cagcaggttgttgtgtctggttaccgaatgcgactacgagatctctgcaatagctcaaca
ctgtctgaatttcttgtaattcaaaatcagacagtggctatggactctgaagccttcatc
tgcaacttgccaaaggaaaaacttcttgcagctgaacgagctttccgtgctaacctgaat
cctttgaagccccttcagagacggatttctttcaattcctccttgcatgatctgtcagaa
actgtggaaactttgagggagagccttgggaagcttgtgaaagagttgctgagcatgaag
agctggagtgacatgaggcaagaggtgatgtttctgaacaacgtgaatgcctcaaactcc
tccacagagatctaccaggctgtgtcacgcattgtgtgtggtcatcctgaaggtggaggg
ctcaaaattaaatccctcaactggtatgaggataacaattacaaagcactgtttggaggc
aacagcactgaagaggatgtagctaacttctatgataactccacaacaccttactgcaat
gagctgatgaagaacctggaaaccagcccgctttccaggattatttggagggctttgaaa
ccgttgctgatagggaagatcttgtacacaccagacacaccagctataaggaaggtcatg
actgaggtgaacagaacgttccaggagctgggtgtgtttcgtgaccttgggggcatgtgg
gaggagatgagcccaaagatttggacatttatggaaagtagtcaggaaatggatctcatt
cggacactgctgaaaggcaaagctctctgggacctgcacttgccagcttccaattggaca
gtggaggacgttgcccgtttcctgtcaaaccacccagaggactttgagggagcaaatgga
acagtgtatacctgggtggatgccttcaatgagacagacctggctattcagacgatatcc
cgcttcatggagtgtgttaacttggacaaactggaacccgtggccacagaagtccggctt
ataaacaagtccttggagctcctagatgaaaggaggttctgggctggcattgtcttcact
gaaatagctcctgacagtgtagagctccctcaacatgtgaaatacaaaatacgtatggac
atcgataacgtggaaaggaccaacaagatcaaggatgcgtactgggatcctggtccccgt
gctgacccctttgaggacatgcgttatgtttggggaggctttgcctacctgcaggacgtg
gtggaacaggccattatcagggtgctgacaggcacagagaagaagacaggagtttacgtg
caacagatgccctacccgtgttatgtagatgacatatttctgcgtgttatgagccgctcc
atgcctctcttcatgactctagcctggatctactcagtggctgtgataattaagggcatt
gtgtatgagaaggaagcccggctgaaggagactatgaggattatgggactcgacaatggc
atcctgtggctaagctggttcattagcagcctcatccctctcctcatgagtgcaggcctg
ctggtgctaatccttaagatggggaatctgctgccctacagcgaccctagtgtggtgttt
gttttcctgtcaatctttggagtggtgaccatcctccagtgcttcctcatcagcacagtg
ttctccagagccaacctggcagctgcctgtgggggcattgtttatttcacgctgtaccta
ccttatgtcctctgtgtcgcctggcaggactacatcagcttctcactgaagatatttgcg
agcctgctgtctccggtagcctttggctttggttgtgagtactttgcactgtttgaggag
cagggtgttggtgttcagtgggacaacttctttgagagcccattagaagaagatggcttt
agcatcaccacatctgccgtcatgatgttgttcgacacattcctctatggggtcatgacc
tggtacattgagtctgtcttcccaggtcagtacgggattcccaggccctggtactttcct
ttcacaaagtcctattggtttggtgaggaacaacaggacagacagcaccttcatcctgac
cagaaggggtcttcagaagtctgcaaggaggaggagcctgtgcacctgagccttggtgtt
tccattcagaacctggtcaaagtttatcgtgatggcaagaaagttgctgtggatggtctc
acactgaacttctatgaaggacaaatcacttcctttctgggacataatggagcagggaag
accactaccatgtccatcttgactggcttgttccccccaacttcgggtacagccttcatt
ttgggcaaagatatccgctctgagcttagcaccatcaggcagaacctgggtgtctgtcca
caacacaacgtgctgtttgatttgctgactgtggaggaacacatctggttctatgctcgg
ctcaaagggctgccagaaaagaaggtgaaagaggagatggatcagatggcaacagatgtt
ggtttgcctcacaaactgaaatctaggacaagcaaactgtctggtggcatgcaaaggaag
ctatcagttgccttagcctttgttggtggctccaaggttgtcattctggatgagcctaca
gctggggtggatccttattctcgcagagggatatgggagctgctactgaagtatcggcaa
ggccgcactatcattctctccacacaccacatggatgaggcagacattctgggtgaccgg
attgccataatttctcatgggaagctttgctgtgttggttcttctcttttcttgaagaac
cagctgggaacaggctattatttgaccctcgtcaagaaggatgtggattcttcactgagc
tcctgccgaaacagcagcagcacggtgtcctatctgaaaaaggatgacagtgtatcccag
agcagctctgatgctggccttggcagtgaccatgaaagtgacacagtgacaatagatgtc
tctgcaatttcaaatctcattacaaaacatgtttctgaggcaagactggtggaggacatt
ggccatgaattaacctatgtcttgccatacaaggcagctaaagagggagcttttgtggag
ttgttccatgaaattgatgaccgtctctctgatcttggcatttccagctatggcatctct
gaaaccaccctggaggagattttcctgaaagtggctgatgacagcggtgtggatgcagaa
acctcagatggaatgttgccagccagaaggaacaggcgtgtgtttggagacagacagagc
tgccttcgtccattcacagaagatgatgtgtttgatcctaatgattcagacatagatcca
gcagaatcccgagaaacagaccttctcagtggcgtggatgggaaaggctcctaccagatg
aaaggctggaagctcacccagcaacagttcatggctctgttgtggaagaggctgcttatt
gccaagagaagccggaagggcttctttgctcagattgtgctgccggctgtctttgtgtgt
attgctctcatgtttagcctgatcgttcctccctttgggaagtacccgagcctggaatta
cagccctggatgtatgatgagcagtacacttttattagcaatgatgctccagaagatgca
ggcactcagaggcttttggacgcccttcttgataagcctggttttgggacacgctgtatg
ccaggacactccatcccagacactccttgcaccatggggcagacagaatggaccactgct
tcagtcccagactcggtcttggatgtcttcttgaaaggcaactggagtatgcagaaccct
tcgccatcttgtgagtgcagcaatgagaagatcaagaagatgcttcctgtgtgccctgct
ggtgcaggcgggctgccacccccacagcgtgagcaagacactgctgacatcctccagaat
ctgacaggccgcaatatatcagattacctagtgaagacctatgcgcagatcattggaaaa
agcttaaagaataagatctgggtgaatgagttcaggtatggtggcttttccttgggagcc
agcagttccctcatgcttcctccaagccatgaagtcactgatgccatcaagcaggtgaaa
aaggtcttggagctagcacaggggagttctggagatcggtttctcaacagcttgtcaagt
ttcatgaaaggtctggatacaaagaacaacgtgaaggtgtggttcaacaacaagggctgg
catgccattgcctccttcctgaacgtgatcaacaatgccatccttcgggccaacctgcag
cagggcaaaaaccctagtacttacggaatcactgccttcaatcacccacttaacctcacc
aagcaacagctctctgaagtggctctaatgaccacctctgtggatgtcctggtctccatc
tgtgtgatctttgccatgtcctttgttcctgccagctttgtggtcttccttatccaggag
cgtgtcagcaaggctaaacatttgcagttcatcagcggtgtgaagccggtgatctactgg
ctagccaactttgtctgggatatgtgcaactacattgttccagccacactagtcatcatc
atcttcatctgcttccagcagaagtcttacgtatcctcctccaacttgcctgtgttggct
ctccttctgtttctatatgggtggtccatcacccctctcatgtatccagcctcctttgtg
ttcaaaatccccagcacggcgtatgttgtgctgaccagcgtgaacctcttcattggcatc
aatggaagtgtggccacttttgtcctggagctcttcaccaacaataaactgaacaatatc
aatgacatcttgaagtcggtgtttctcatcttcccccacttctgcttgggacggggactc
attgatatggtgaaaaaccaggccatggcagatgctttggagaggtttggagaaaatcgt
tttgtgtcccctctgtcgtgggaccttgtggggaggaacctctttgccatggcagtagag
ggcgttgtcttcttcctcatcacagtgctcatccagtataggttcttcatcaaacctagg
cctgtctatgctaagctgcctcctgtgaatgatgaagatgaggatgtaaacagggagaga
cagaggataattagcggaggaggacagagtgacatcttggaaatcaaggagctaacaaag
atttacagaatgaaacgaaaaccagcagttgataggatctgtgttggaattccccctgga
gagtgctttggactcctgggagtaaatggtgctggcaagtcatccacttttaagatgcta
actggtgatacagatgtgacaggaggagaagctttcctcaaaggaaacagtatcttatcc
aacatccaagaagtccaccagaatatgggttactgcccacagtttgatgctgttaatgaa
ctgctgacggggcgagagcacttggagttctttgcgctcctaagaggtgttccagagaaa
gaagtttgcaaggttggcgagtgggcaattcgcaaactgggccttgtgaaatatgcagaa
aaatatgctggaaattacagtggagggaacaggcgcaaactctccacagccattgccctc
attggaggaccacctgtggtgttcctggatgagccaacaacagggatggatcccaaagca
cgccgtttcctgtggaactgtgctctcagtgtaatcaaagagggaagatcagtggtgctc
acatctcacagcatggaagagtgtgaagccttgtgcactcgaatggcaataatggtcaat
ggacgattcaggtgtctaggcagtgtccagcacctaaagaacaggtttggagatggttac
accatagtggtgagaattgcaggggcaaacccagacctgaagcctgttgaggagttcttt
gggcatgccttccctggaagtgtcctgaaggaaaagcataggaatatgttgcagtaccag
cttccctcttcaccatcctccctggccagaatattcagtattctctcccagaacaaaaag
agactccacatagaagactactccgtttctcagactacacttgaccaagtatttgtaaat
tttgctaaggaccaaagtgacgacgaccatactaaggacctgtcactgcacaaaaaccag
actgtggtagacattgcaatcctcaattccttcctgcaagatgagaaggtaaaagaaagt
tgcgtgtga
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integrated database retrieval system
