Cuculus canorus (common cuckoo): 104062982
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Entry
104062982 CDS
T08597
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104062982 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cuca03021
]
104062982 (PCF11)
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104062982 (PCF11)
Transcription machinery [BR:
cuca03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104062982 (PCF11)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104062982 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
104062982
NCBI-ProteinID:
XP_009563420
LinkDB
All DBs
Position
1:complement(45838762..45860599)
Genome browser
AA seq
1709 aa
AA seq
DB search
MSAPESTAGGGGEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEA
QIAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESAAPTSAV
TSGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQ
QGSSTIASVPAPSKQHVSPAPHVTVKPPHQSPVQSERSKPSPSPPLHDLKVVNRDPRLNR
TGQQSSHAKDQSHRKEFPPNTTSQSDTKTNKTTPSEKQNSTKPEKSKASEKTQKKELDQS
ETKSKSPSPLKNKQPNTKDTKTQESESTKVSEISKRDPRLKRHLQDKSEGKEEEVKEKRR
NTEKKEKEEHKTCEHRPAGSRNKVINGAVQKQELTTEESEKQGGKQGRSRKRSRSRSPKA
RSPSTHSPKRRERRSPKRRLRSLSPTSSAPKIGKIRPIGPKQSHTEEGTPATRDERSSNK
RNAKQEVRDPRRVKKVQEDRPLETASPHSTKASPDPKENAENWQGSKSGKRWKSGWEENK
NSQQNEEHQAPGKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKRE
LLKKANERLTSGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDGPAEEKCGLKKKPLLSD
AELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYQLPDALLSGLECEQAKAKRGAQFDR
KEPFGERPRRHSPVSGTNRAFTENLSPLESRRRLEEPTGTKGARGSKNFDPYDNWGESEE
FRDALRQQGKSTTEFQKIDGDAVCRFDNREERPLLGQAGVREEPRSPFSERFKRTRYEDP
DKAAFPESPGSRFAGVEAKKPRISALMEERPLFDGSPRPAAARVGVDGPGSPFVDGPAAS
SSSRIDGPPGQAAMRFDGPLVAAGASQFDGPLAGTGGAAALRFDGPPGQLAGALRFEGPP
GQVGAGGPLRFEGPLGQMGGPLRFEGPAGQPLGGPRFEGPGVGLRFEGPRGQPSGGLRFE
GPHGQPMGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFE
GPHGQPMGPHGPSGGGLRFEGPHGPSGGGLRLEGPHGQPGVGPRLLDGPVHQGAGGLRFD
GPLGRAGSRFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRFERAPGQQAQARFDTAIPQ
RFDGPHQPASRFDLPLGLQGARFENVASHPASRLEMSPYGQGGPFVDHPGQGYNGPSHGM
QFQRPDLFDGSHGPNFNGPAGPGAQNFPLRAAGHYFDEKGLQGPQYGNFNNLPMGSNQVS
LMSAQPGPYGQGQQYLPNPGGFVQNPAGALPHSYPDNHLGQVDVNELFAKLLKTGILKLS
KTDSTSAQVNEASAQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCY
SCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERA
KSQFFEKAHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLK
NAIRVDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQETCDLPKVK
EEPDDTPAACAEESTVASTEIKTEPEESV
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcaccgccggtggcggcggcgaggcccgggaagacgcgtgccgc
gattaccagtcgtcgctggaggacctgacgttcaacagcaaaccccacatcaacatgctg
accatcctggccgaagagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcg
caaatcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccatt
gtcaagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacattt
atttgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctcc
acatgggatgatatttttcctttgaagaagctatatgcacttgatgtcagagtcaactca
ttagatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccat
gtgaatcctaagtttttaaataaatcgccagaggaatctgctgcacctacctctgccgtc
acttctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgactcaggag
caactgataaggcagcagttgcttgcaaaacaaaagcaattgttggaacttcagcaaaaa
aagttagagctggagctggaacagactaaagcacagctggcggtatctcttagcgttcag
caaggatcatctactatagcctctgttccagcaccttccaagcaacacgtgtctcctgca
cctcatgtgacagttaaaccacctcatcagtctcctgtgcaatctgaaagaagcaaacca
tccccaagtcctccacttcatgatctcaaagtggtaaatagagatcctcgacttaataga
acaggtcaacagtcttctcatgctaaagatcagtctcacaggaaagaattcccaccaaac
acgaccagtcagtctgataccaagacgaacaaaaccacaccgtctgaaaaacaaaactcc
acaaagccagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaccagtca
gagacaaaatctaaatcaccatcccctttaaaaaataagcagcccaatactaaagatact
aaaacccaggaaagtgaaagcacaaaagtatctgaaattagtaagagggatccaagactg
aaaagacatcttcaagataagtcagagggcaaagaggaggaggtgaaagaaaagaggagg
aatacagagaagaaggaaaaagaagagcataagacctgtgaacatagacctgcaggcagc
agaaataaggtaattaatggtgctgttcagaaacaagagttgactacagaggagtcagaa
aaacagggtgggaaacaagggagatcgagaaaacggtcacgatcacggtctcctaaggca
cggtcaccatctacacattctccaaaaagacgagagaggagatcacctaaaagacgactt
aggagcctatctcccacctcatcagctcctaaaattggaaagatacgtccgataggccct
aaacagtctcatactgaagaaggcacaccggcaacaagagatgaaagaagttctaataag
aggaatgctaaacaagaggtgcgagatccaaggagagtgaaaaaagtccaagaagatagg
cctctagaaacagcaagcccgcattctacgaaagcttctcctgatcccaaggagaatgct
gaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaataaa
aactcacagcagaatgaggaacaccaagcacctggtaaatcccctcaccaaagacaccgg
gaaaactggcctgctggtaaaggtattttatcacctcgagcaccaaagcagcagcaccgg
ttaagtgtggatgctaatttacagattcccaaagaactgacatctgcaagcaagagggaa
ttacttaagaaggctaatgaacggttaacttctggtgaaataacacaagatgagttcctc
gtggtggctcatcagatccgacagctgttccagtatcaggaaggaaaacacaggtgcaat
gtctgggatggtcctgcagaggaaaaatgtggtttgaaaaagaaacctctgctgtcagat
gcagaattaacatattatgaacataaagctaaactaaaaagaacacaagttcagcattca
ttgtcaagacttgatctgttggatcctgatgatattttggattatcagttgccagatgct
ttgctttctggattagaatgtgagcaagcaaaagccaagcgtggagcacagtttgacaga
aaagaaccatttggagaaagaccaaggaggcactctcctgtaagcggcactaacagagct
ttcactgagaacctgtcgccacttgagagtagacgaaggcttgaggaaccaactggtact
aaaggagcaagaggttctaagaactttgatccttatgacaactggggagaatcagaagaa
tttagagatgctctaaggcagcaggggaaaagcacaacagagttccagaaaatagatggt
gatgcagtctgcagatttgataatcgtgaagaaaggccgcttcttgggcaagctggtgtt
cgagaggaaccaagatcaccattcagtgaacgtttcaaaagaactaggtatgaagatcca
gacaaagcagcatttccagaaagtccaggatcaagatttgcaggcgttgaagcaaaaaag
cccaggataagtgcactaatggaagagagacctctgtttgatggctcacctagaccggct
gctgcacgggttggggtggatggaccaggaagtccttttgttgatggtcctgctgccagt
tcaagttccagaattgatgggccgcctggacaggctgctatgagatttgatgggcctttg
gtggcagcaggtgcctctcagtttgatggaccactggcaggaacagggggagcagcagcc
ctaaggtttgatgggccaccagggcagctggcaggggccctgagatttgaaggacccccg
ggacaggttggtgcaggcggcccactgaggtttgagggacctcttgggcagatgggtggt
cctttgcggtttgaggggcctgctgggcagcctctgggtggtcctagattcgaaggaccc
ggagttgggctcaggtttgagggtccccgtggtcagccttcaggtggtctcaggtttgag
ggacctcatggtcaacctatggggcctcgaggtcagccagggggtggtctcaggtttgag
ggaccccatggtcagcccttggggcctcatggtcaaccagggggtggcctcaggtttgag
gggccacatttacagccattggggccccatggtcaacctggaggtggcctcagatttgag
gggccacatggtcagcctatggggccacatggaccatcaggtggtgggctcagatttgaa
gggccacacggaccttcaggtggtgggctcagattggaaggacctcatggtcagccaggc
gtaggtcctaggttgcttgatggaccagtacaccagggagctggtggacttcgatttgat
ggccctctgggccgtgctggttcgagatttgatggttgtcatggagctggatttgatggt
cagcctggacagctatctctgttgcaaagatttgatggaattcacggacagcctggtcca
agatttgaaagagcacctgggcaacaggcacaagcacgatttgatacagccatacctcaa
agatttgatggacctcaccagccagcctctagatttgacttgccacttggtcttcaaggt
gcacgttttgaaaatgtagctagccatcctgcctcaagactagaaatgtcaccgtatgga
caaggtggtccatttgttgaccatcccggccagggctacaatggaccgtctcatgggatg
cagttccagaggcctgatctgtttgatggttcacatggaccaaatttcaatgggccagct
ggcccaggagcacagaatttcccgctaagagcagctggacattactttgatgaaaagggt
cttcagggtcctcaatatggaaacttcaataatctgccaatgggaagtaatcaggtttct
ctcatgtctgctcaaccggggccttatggtcaaggtcagcagtatttgccaaatcctgga
ggttttgttcagaaccctgcaggagcccttccacattcatatcctgataaccaccttggg
caggttgatgtcaatgaattatttgctaagctgctgaaaacgggaatcctcaaactgtca
aaaactgattccacgtcagcacaagtgaacgaagcatcagcccagccaactgctgaagag
gaggatgatgaccagaatgaggatcagaatgtcccagacctcactaacttcattgttgaa
gaacttagacagcgttacgatagtgtaataaatcgactgtacactgggattcagtgttac
tcgtgtggcatgagatttactacttcacagacagatgtttatgcagatcatttagattgg
cactatcgtcagaatcggacagaaaaagacgttagcagaaaaattacacaccgaagatgg
tactacagtttaacggactggattgaatttgaagaaatagccgatctagaggaacgtgcg
aaaagccagttctttgaaaaagctcatgaagaggtggtgttgaaaacacaagaagctgca
aaagagaaggagtttcagagtgtccctgctggaccagctggagcagtggagagctgtgaa
atttgccaagagcaatttgaacagtactgggatgaggaagaggaagagtggcacctgaag
aatgctatcagagtagatgaaaagatttaccatccgtcttgctacgaagattaccaaaat
acatcgtcatttgattgcacaccatctcccagcaagactcctgtcgaaaacccactaaac
ataatgttgaacattgttaagcaagaaacgcaggagacctgtgacttgcctaaagtcaaa
gaagaacctgacgacacccctgctgcctgtgcagaagagagcacagttgcatctacagag
attaaaacagaacctgaagagtctgtataa
DBGET
integrated database retrieval system
