KEGG   Cuculus canorus (common cuckoo): 104063078
Entry
104063078         CDS       T08597                                 
Symbol
GEMIN5
Name
(RefSeq) gem-associated protein 5 isoform X1
  KO
K13133  gem associated protein 5
Organism
cuca  Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:cuca00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cuca03019]
    104063078 (GEMIN5)
   03041 Spliceosome [BR:cuca03041]
    104063078 (GEMIN5)
Messenger RNA biogenesis [BR:cuca03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     104063078 (GEMIN5)
   mRNA cycle factors
    P-body specific factors
     104063078 (GEMIN5)
Spliceosome [BR:cuca03041]
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   SMN complex factors
    104063078 (GEMIN5)
SSDB
Motif
Pfam: GEMI5_RBS TPR_GEMI5 WD40_CDC20-Fz Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_RIG_2nd WD40_Prp19 Beta-prop_EML_2 WD40 WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_WDR3_2nd Beta-prop_RIG_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st WDR55 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_HPS5 Beta-prop_WDR36-Utp21_2nd Beta-prop_IFT140_1st Beta-prop_EML Beta-prop_Aladin WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_2nd WDR90_beta-prop_4th Beta-prop_WDR19_1st WD40_Gbeta Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_Nup120_160 WD40_MABP1-WDR62_1st Beta-prop_WDR41 WD_LRWD1 TPR_IF140-IFT172 Tricorn_2nd Lgl_C
Other DBs
NCBI-GeneID: 104063078
NCBI-ProteinID: XP_053935306
LinkDB
Position
14:13254666..13306300
AA seq 1548 aa
MFRDGARGAWRQRGKQGGMAMATARALPASPNWYCSRCSDASSDGRFFGFAARSRVCLLD
VSAAAPAFRGELIGHTERVSGFTFCHCPGQSSLCASSADDGSVRIWDAAELALVAEHSLH
QNTISALHWSPLVKDLIISGDEKGVVVCYWHNRSDSQQFLPEPRTIFCLTCSPHHENLVA
IGYKDGMVVVIDISRKKEVIHRLRGHDDEIHSLAWCPVPGEERLPAWQDELQVSSEEGKV
PNGELKQDTATKKGCYLASGSKDQTIRIWSCTRGRSVTTLKLPPMKRRGGAVDPAVKERI
WLTVHWPSGHSTEIVSSSFGGELLLWDLTQSGKRKWTLLGSSEGQNHSRIVFNLSSVTRQ
DKELLFSISMDRDVKCWDLSTLECSWTMPSLGGFVYSLAFSPVDTGCLAVGVGDSMIRVW
NTLSMNNIYDVKTFWQSIKSKVTALAWHPAKEGCLAFGTDDGKVGIFDTFSSSTKNKPPQ
ISSTYHKKTVYTLAWGPPTPPLFSGEGEQPSVTLYSCAGEGIVFQHNPWKLNGEANDINK
IIQDTNSIKHKLPARTEISWKPDGKLLALGNEDGSIEIFQAPNLKLLCTIQQHHKLINAI
RWHHEHGSQPELSYLIASGSINATIYVHNLKSVVESTSESPLTITEPFRTLAGHTAKITS
LSWSPHHEGRLVSACYDGTAQVWDIMKEEPLYNYRGHHGRLLSVQWSPVDPDAVYTGADD
FSVHKWHISKQEHTRPPHGRKSIELEKKRSMQPKVKAKKKKKPIGKSQGNQDSSNAMNGD
ESTKETLLEENGVSDLEGEKEAQEAELPDKVSVTVSKDASSSANDYSSFGLPKPFVTQKA
ASVEKDPPKEKPTSDATLKKRKPRSILPLSTFMDHRSKDELHQDCLTLATCLKTKDNNED
MSPDLKDCIHLGLFADRASVHKMIDVEGKHHLENGHPELFQQLVLWKGDMKGVLQAAAER
GELTDQLVAISPMVGYQAWVWTVEAFVKQLCFQEQYVKAASHLLSIHKVYEAVELLKVNH
FYREAIVIAKARLRPEDPILKDLYTSWAALLEKDGHYSMAAKCYLGASSPYDAVKVLAKK
GDVTSLKTAAELALISGEEELSATLSFRCAQDLLMSRNWVEAQEVLQRHKTLFGQRLVFC
LNELLCKCLSERKPCNRKRPVPPCYHSWTVNRKASFFDMVVEVWQSVMGVDTTEKATCAK
EQLRSIEHPPSTSNTRPKQVLFHLSHDLTLAALDYQTATWDEAVKSILGAVTRCYDAGNF
FLMQEIRSIILPEGCDKLRHKLDSTNSQSMDACRSLEAFVVYGLLYELWWNLPKDSLALQ
KAGLDPVLCSSEQKALEKSDVSGQSSEETADQTAVEMDENLCSTTEVPKCETEGDSRISS
VDLADRQSKLNGCKVLLSEEIAALQNTQRDIAEVQQILADMIRRHQQQRNNLQENTNGST
QESNMQQNSETESDKPCSDSTQMNCKHEVKEPITLPELTQQLLKAKQKLAEFPDNLKVFP
FPDVLECCLVLLHIGSLCPPELHKQALDLLRKHGSSNIYEKAGRRFLT
NT seq 4647 nt   +upstreamnt  +downstreamnt
atgtttcgcgacggcgcgcgcggcgcttggcggcagcgcgggaagcagggagggatggcg
atggcgacggcgagggcgctgcccgcctcgcccaactggtactgcagccgctgcagcgac
gccagcagcgacggccgcttcttcggcttcgcggccaggagccgcgtctgcttgctggac
gtgagcgccgctgcgcccgccttccgcggagagctcatcgggcacacagaaagggtctct
gggttcacgttttgccactgtcctgggcaaagcagcctctgtgccagcagtgctgacgat
gggagcgtcaggatctgggatgcagcagaactggcgctggtggcagagcacagcctacac
cagaacacgatctcagcattgcactggtcaccacttgtgaaagatctgattatatccggt
gatgaaaaaggtgtcgtcgtttgttactggcacaacagaagcgacagccagcagttcctt
ccagagcctcggacaatcttttgtctcacttgttctcctcatcatgaaaacctggtggca
attggctacaaggatggcatggttgttgtaattgatatcagcaggaaaaaagaagtaatt
catcggctaagaggccatgacgatgaaatacattctctggcgtggtgccctgtgcctgga
gaagaaaggttacctgcttggcaagatgagctccaggtttcttcagaggaaggtaaagtt
ccaaatggggagctgaaacaagacacagccacgaagaagggttgttatctggcttcagga
agcaaagatcagaccatacgaatatggagctgcactagaggcagaagtgtaacgactttg
aagctgccacccatgaagagaagagggggagctgttgatcccgctgttaaagagcgcatt
tggttgactgttcactggccttctggtcattccacagaaattgtatccagctcttttgga
ggagaactgctgctctgggatttgacccaatctgggaaacgcaagtggacgcttctagga
tcttcagaaggacaaaatcactcacgtattgtgttcaatctgagttctgtgacacgtcaa
gacaaagagctcctgttttctatttcaatggacagagatgtgaagtgctgggacctgtca
actctcgagtgcagctggaccatgccttcgcttgggggatttgtctatagtcttgccttc
tcccctgtggacacaggctgtcttgctgtaggtgttggagacagcatgatccgggtgtgg
aatactttgtccatgaacaatatttatgatgttaaaaccttctggcaaagcataaagtcc
aaggttacagcattggcctggcatccagccaaggaaggctgcttggcttttggaacagat
gatggaaaagttggtatatttgacaccttctccagcagcactaagaacaagccacctcag
atctccagtacttaccacaagaagactgtatacacattagcttgggggcctccaactcct
cctctgttttctggagaaggtgaacagccctctgtaactttatatagttgcgctggagaa
ggtattgtttttcaacacaacccctggaaactcaatggggaggcaaatgacatcaacaaa
atcatccaagacactaattcaatcaaacacaaactccctgcacgtacagagatcagctgg
aaaccagacggcaaactcttggctcttggcaatgaagatggctcaatcgaaatatttcag
gcaccaaacttgaagttgctctgcactatccagcagcatcataagctgattaatgctatt
cgttggcatcacgagcacgggagccagccagagctgagttatttgatagcttcaggctca
atcaacgccactatttatgtgcataatctcaagagcgtcgtagagagcacttcagaaagt
cctctgacaataacagagccttttcgaactctggctgggcacacagctaagattacaagc
ctttcttggagcccccaccatgagggaagattggtatccgcttgctatgatggcactgca
caggtatgggacatcatgaaggaagagccactctacaactaccgagggcaccatggccgg
ctactgagtgtccagtggtcgccagtggatccagatgctgtttatacaggagcagatgat
ttttctgttcacaaatggcatatctcgaagcaggagcatacacggcctcctcacggcaga
aagagtatagaattagagaaaaaaagaagtatgcaaccaaaagtcaaagccaagaagaag
aaaaagcctataggaaagagtcaaggcaaccaggattcaagtaatgccatgaatggagat
gaaagcacaaaggaaacgttgctagaggaaaatggagtgtcagaccttgaaggagagaaa
gaagctcaagaggcggagttgcctgataaagtctccgtgactgtgtccaaggatgcatct
tcatctgcaaatgattattcctcatttggcttgccaaagccttttgtgacccagaaagct
gcttctgtggaaaaggatccacctaaagagaaaccaacttctgatgctactctgaagaag
aggaagcctcgttctattctaccccttagcacattcatggatcacagatcaaaagatgaa
ttgcatcaggactgcttgacactggctacgtgtctaaaaaccaaagataataatgaagat
atgtcccctgacctcaaggattgcatccacttggggctgttcgcagacagagcttctgtg
cacaagatgattgatgtggaaggaaaacatcacttggagaatgggcatccagagctcttt
cagcagctcgtgttgtggaagggagatatgaagggggtcctccaggcagctgctgagagg
ggagagctaacagaccagctggtagcaatctcgcccatggttggatatcaggcctgggtt
tggacagtagaagcttttgtgaagcagctgtgttttcaggagcaatatgtgaaggctgcc
tcccatcttctgtccatccataaagtgtatgaggctgtcgagctcctgaaagtgaaccat
ttttacagggaagcaattgtaattgctaaggccaggttgcgtccagaagatccaattctg
aaggatctctacaccagctgggcagctttgttagagaaagatggtcattattccatggct
gccaaatgttatttgggggcttcctcaccctatgatgcagttaaggtgttggcaaaaaag
ggagatgtgacatcccttaaaactgctgctgagctggcactgatatctggagaggaggag
ttgtcagcaactttgtctttcagatgtgcccaagacctgctgatgtccaggaattgggtg
gaagctcaggaagtccttcagcgacacaaaactctgtttggacaaagacttgttttctgc
cttaacgaactgctttgcaagtgccttagtgaaagaaaaccctgcaaccgaaagaggcct
gtgcctccctgttatcacagctggacggtgaacagaaaggcctcattttttgacatggtg
gtagaagtgtggcagagcgtaatgggagtggacaccactgaaaaagccacatgtgcaaag
gagcagctacgcagtattgagcatcctccttctaccagcaacacacgcccaaagcaggtg
ctcttccatctctctcatgacctgacccttgcagccctggactatcagactgctacttgg
gatgaggcagtgaaaagtattcttggagctgtgactcgctgttacgatgctggtaatttc
tttctgatgcaggagattcgcagcatcatccttcctgaaggctgtgataagctgagacac
aaactggacagcacaaattctcagagcatggatgcttgcagaagtttagaggcctttgtg
gtttatgggctgctgtatgaactatggtggaacctgcccaaagactccctcgccttgcaa
aaggctggtttggatcctgtgctgtgttccagtgaacagaaagctcttgagaagagtgat
gtttcaggtcagtcctctgaagaaactgctgaccaaactgcagttgagatggatgaaaac
ctctgcagtacaactgaagttcctaagtgtgagacagaaggtgactcaagaattagctca
gttgatttggcagacaggcagtcaaaactgaatggctgcaaagtgcttctttcagaagag
attgctgctttacagaacacgcagagagatatagctgaggtccagcagattttagcagat
atgatccgccggcatcagcagcagaggaacaatctccaggaaaacacaaatggaagcacc
caggaaagcaacatgcagcagaactcagaaactgagtcagacaagccatgctctgacagc
acccagatgaattgtaaacatgaagtaaaggaacccattacactccctgagctaacgcag
cagcttctaaaagcaaagcagaaactagcagaatttccagacaatttaaaggtcttcccc
ttccctgatgtgctagagtgctgccttgtactccttcacattggatccctgtgccctcca
gaactacacaaacaggcattggatctccttaggaaacatggtagctctaatatttatgaa
aaggctggcaggagattcttgacatga

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