Cuculus canorus (common cuckoo): 104063095
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Entry
104063095 CDS
T08597
Symbol
SOX30
Name
(RefSeq) transcription factor SOX-30 isoform X1
KO
K09271
transcription factor SOX15/30
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104063095 (SOX30)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
104063095 (SOX30)
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Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
104063095
NCBI-ProteinID:
XP_009563542
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Position
14:12506861..12516326
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AA seq
676 aa
AA seq
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MERAAKRRSRRSRAPPEPPPPAPEGRGPLGPVCIKVEEPEPGPAGLAACAGASQGPRDEP
GGFPVLWGTHGPIKRQEDLEWTIKRVKDLEWSSRESQREEKSKSGSEPWSGGDIKVKVPD
EAFETFWLKTEKDCAPGGRQHEPTPASTSDLAMQLGGGLGVPPQDQKIPVMFQPVPPEIS
TQGFGVLPQDQKIPVVVQPVPPQNCMQIQGPLPPEPIPVASTVKPVPLETQSLLKPSVNT
ETKNLSLTILPSDSGMQDAPFSKSKSGRVKRPMNAFMVWARIHRSTLAKANPDASNADIS
VQLGLEWSKLTEEQKQPYYDEAYRIKKKHSEEFPDWVYQPRPGKRKHSPLPASPVFSNAS
QNIITRSPAGIFPFQSPAYPFVICSFNSIGYRLPVCEAPPAICLPTPVIQHAGPVTLFQT
SSTSNTSVAVPAPALPLSHVISPQVFVEPAHTEALNISSGFNCSLMGPTPVIIESFNRNP
QNITPPNTIFSVPSSELPSVYPGVSIFRRGLPLPRAVPFLHTPLYESPPICRPFNLFEVF
PPFSFHRPHFVPGPRFFPSSTCPFSQPPFGSSASGRIGFYEDRYQSQGVIFSASGGGCPF
KEYPEESTHEECLSSESLVVPCYSSNEEPSVSPLPHLDVKALEEILLDTPPTPSSVQIIN
ITDSDGEEELKLLQGL
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggagagagcggccaagcggcgctcccgccgctccagggcgcccccggagccgccgccc
ccggcgccggagggccgcggccccttgggaccggtgtgcatcaaagtggaggagcccgag
ccggggccggcaggccttgcggcctgtgccggggccagccaggggccgcgggatgagccg
gggggcttcccggtgctgtgggggacccacggccccatcaaaagacaagaggacctcgaa
tggaccatcaagagagtaaaggacctcgaatggagcagccgagaaagccagagggaggag
aagagcaagagtgggagtgagccctggagcggaggtgatatcaaggttaaggtgcctgac
gaggcctttgagaccttttggttgaagacagaaaaggattgtgccccgggtggccgccag
cacgagcccactcccgccagcaccagtgacctcgccatgcagctgggtggggggcttggg
gttccccctcaagatcagaagatcccagttatgtttcagcccgtacctcctgagatcagt
acgcaagggtttggggttctccctcaagatcagaagatcccagttgtggttcagcctgta
cctcctcagaactgcatgcagatccaaggtcctctgccgccagagcccattcctgtggct
agtacggtgaaaccagtgccgcttgaaacacagtctttactgaagccttcagtaaatact
gaaactaaaaatctgtcgctcacaatactgccctccgattcaggtatgcaagacgctcca
tttagcaaaagcaaaagcgggcgtgtaaagcgtccaatgaacgcatttatggtgtgggct
aggattcatcggtccaccctagcaaaagctaacccagatgccagtaatgcagacatcagt
gttcagcttggactggagtggagcaagctgactgaggagcaaaagcagccctattatgat
gaggcttacagaatcaaaaaaaagcacagcgaggaatttcctgattgggtttatcagccg
cgaccaggcaaaaggaagcattctccactgcctgcctctcctgtattttctaatgcttct
cagaatatcatcactagaagtcctgctggcatttttcccttccagtcacctgcttatcct
tttgtcatctgcagttttaacagtattggatatcgacttccagtctgtgaagctcctcct
gccatctgtctgccgactcctgtcattcaacatgctggtccagttactcttttccagact
tctagtacaagcaacacatcagtggctgttccagctccagccctgcccctgagccatgta
atttcaccacaggtctttgtggagcctgctcacacagaagctctgaacatatcatctggc
ttcaattgctccctgatgggtcctacaccagttatcattgagagcttcaacagaaatcca
cagaacataacacctcctaataccatattttctgtccctagtagtgagctcccaagtgtg
tacccaggggtttctatttttcgtagaggactacctcttccccgagctgtgccttttctt
cacacacctctctatgagtctcctcccatttgccggccgttcaatctgtttgaagtattt
cctccattttcatttcaccgccctcactttgtacctggacctcgctttttcccctcaagc
acgtgcccattcagccaacctccatttggcagctcagcatctggacgcattggcttttat
gaagacagataccaaagtcagggagtgatattttcagcttcaggtggaggctgtcctttc
aaggaatacccagaagaaagtacacatgaggaatgcctcagctctgagagccttgtagtg
ccctgttacagcagcaatgaggagccatctgtaagccccttaccacatctggacgttaaa
gcactggaggagattttgctggacaccccacctactccctccagcgtccaaataatcaac
ataactgacagtgatggggaagaagaattaaagttgttgcaaggattgtaa
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