Cuculus canorus (common cuckoo): 104063117
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Entry
104063117 CDS
T08597
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cuca03009
]
104063117
03036 Chromosome and associated proteins [BR:
cuca03036
]
104063117
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104063117
Ribosome biogenesis [BR:
cuca03009
]
Eukaryotic type
Pre-60S particles
Helicases
104063117
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
104063117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
GUCT
DD_DDX21-DDX50
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
UTP25_NTPase-like
AAA_22
Motif
Other DBs
NCBI-GeneID:
104063117
NCBI-ProteinID:
XP_053926848
LinkDB
All DBs
Position
7:34116757..34133872
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AA seq
809 aa
AA seq
DB search
MLMIPEPDTILQLRSHHRGTEGPRPRAAPDAGIASRSRPGPAGLWGRMGGACGRAALLGV
SAARGARWGPRGGAGVLIPTRILIPILARALTPIPPPLRPRGPARALPAPPSLRGCATGG
GHTMPAALPVGDTLRGGRRRGAAVRAGEAAQEETQERKVKRCGKDEDEDAQPEESNLDSG
DLEPPLPKKTKRAKEKSSDLAGENDGLVKLLCTADGDVTSPAALSSPSDAVAGEQNSDAE
ELTEEAKEGAFSNFPLSENTIKLLKARGVKYLFPVQVKTFQPIYDGKDVIAQARTGTGKT
FSFAVPLIEKLQDVSQDVRRGRSPKVLVLVPTRELATQVAKDFKNLTRKLSVACFYGGTP
YKEQIDLLKSGIDILVGTPGRIKDHIQNSKLELSSVKHVVLDEVDHMLDMGFAEQVEEIL
GFAYKKGSENNPQTLLFSATCPRWVYDVAKKYMKDEYEQIDLIGKKTQRTAMTVEHLAIQ
CRSSQRAGVLGDIIQVYSGSHGRTIVFCETKKEANELAMNASLKQDAQSLHGDIPQKQRE
ITLKGFRDGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGIC
ICLFQRREEDLLKQVEHKAGITFKRIGVPSATDVIKASSNDAKKLLEAIPPSAVDYFRKS
AQELIDEKGAVAALAAALAHISGAAYIQQRSLLNSTAGFVTMVLKCSIEMRSMSYAWRGL
KEQLGEEVDNKVSGMRFLKGKMGVCFDIPVDELTNIQEQWRDTRRWQLSAAKELPELEED
AGQRFSKFGSGRQGDGGFKRNNWFKKPGT
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgattccagaaccggacacgatcctccagctgcggtctcaccacagaggaacg
gaggggccgcgcccccgcgccgctccggatgccgggatcgcgtcccggtcccgccccggt
cccgcggggctctggggccgcatgggcggtgcgtgcggccgagcggcgctgctcggggtc
tccgcggcgcggggcgctcggtgggggccgcggggcggcgcgggggttctgatcccgacc
cggatcctgatcccgatcctcgctcgggccctgaccccgattccgcccccgctgcggccc
cgcggcccggcccgggcgctgcccgcccccccctcgctgcgcggctgcgcgaccggcgga
ggccacaccatgcccgcagcgctgccggtgggggacacgctgcggggcggccggcggcgg
ggagcggccgtgagagcgggagaggcagcgcaggaggagacccaggagaggaaggtgaag
cggtgtgggaaggatgaggatgaggatgcacagcctgaggaaagcaacctcgacagcgga
gacctggagccgcccctgcccaagaagacaaaaagagccaaggagaagagcagcgacctg
gcgggagagaacgatggcttggtgaaactcctctgcactgcagacggtgatgtgacgtct
ccagcagccctgagctcacccagtgatgcggtcgctggagagcagaacagtgacgccgag
gagctgacagaagaagcgaaagaaggtgccttctccaattttcctctctccgaaaacacc
atcaaacttctcaaagctcgaggtgtaaaatacctgttccctgtgcaagtgaagactttt
cagcccatatatgatggcaaagatgtaattgctcaagctcgaacaggaactgggaaaacc
ttttcttttgctgttccgctgattgaaaaacttcaggatgtctcgcaggatgttagaaga
ggccgttcaccaaaagtgctggttcttgttccaaccagggaactggccactcaggtagcc
aaagacttcaagaatctcaccaggaagctgtcagtggcttgtttttatggaggaactcca
tataaagaacagattgacctccttaaaagcggcattgatattctagtgggaactcctgga
cggatcaaagaccacatccagaatagcaaactggaactttctagcgtgaagcatgttgtc
ttggatgaagtcgatcacatgttagacatgggctttgctgaacaagtggaagaaatctta
ggatttgcttataaaaaaggttctgagaacaacccccagacgctgctgttttctgcaact
tgtcctcgatgggtttatgatgtggcgaaaaaatacatgaaagatgaatatgaacagatt
gatctgattggaaagaagactcagaggactgccatgacagtggaacacttggctatacag
tgtcggtcgtctcagagagcaggagttcttggggatatcattcaggtctacagtggcagc
catgggcggaccattgtcttttgtgagaccaaaaaggaagcgaatgaactggctatgaat
gcttcactcaaacaggatgcccagtcattgcatggtgacattccacagaaacagagagaa
attacattaaaaggctttagggatggtgtgtttgaagttctgattgcaacaaacgtcgct
gcccgtggtttggatattcccgaggttgaccttgttatccagtgttccccaccaaaagat
gtggattcctacatccatcgttctggacgtacaggccgagctggccggactgggatctgc
atttgtttatttcagagaagagaagaagatcttctgaaacaggttgaacacaaagcgggg
attacgtttaagcgtataggtgttccttctgctacagatgtaattaaagcttcaagtaat
gacgccaaaaagttgttggaggccattcctccttcggcagtagattacttcagaaaatct
gctcaagagctcatagatgaaaagggggcggttgctgccctggctgcagctctggcccat
atttctggggcagcttacatacagcaacgctccttactcaactcaactgcgggcttcgtg
accatggtgttgaagtgttcaatagaaatgcgtagcatgagctatgcctggcgaggacta
aaagagcagcttggggaggaagtagataacaaagtatccggaatgcgtttcctcaaggga
aagatgggcgtgtgctttgatatccctgtcgatgaactgactaacatacaggagcagtgg
agggacaccaggcgctggcagctgtcggcagcaaaggaattgcctgaactggaagaggat
gccgggcagaggttctccaagtttggaagtgggaggcaaggcgacggcggcttcaagaga
aacaactggtttaagaaaccggggacatga
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