Cuculus canorus (common cuckoo): 104063365
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Entry
104063365 CDS
T08597
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104063365 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104063365 (PATL1)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104063365 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
104063365 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
104063365
NCBI-ProteinID:
XP_053924835
LinkDB
All DBs
Position
5
Genome browser
AA seq
764 aa
AA seq
DB search
MFRYQSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEEKP
VANRERDGGGGEDTDLLGDPEDALAERLTRLVIDSELEDPAIMQAVQTRGPAQQPGGLNS
SIWDSSAVLQRIRGPLLTQEMPSVSVLDYALPQRPAQPREEERDPSERALPRRSSSPVIG
SPPVRAVPIGTPPKQATMPNFNQQILCPKPVHIRAPMQQRYPPSYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAPPAPPPSQPQHPPGPGSHLQSLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSVGDRGGHRSSHQEQMRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLSAAEEVQGEGPKKERTKLITPQVAKLEHAYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMGERKQKICDMYDNLRGKAPGQERLSDDHFMQIMCIRKGKRLVARILPFL
SPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SATAPTNPHLTAVLQNKFGLSLLYLVLSRGEELQSSDATTELMQDNQWTELMLMATRELL
RIPQAALAKPVSTPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtaccagtccctggaggactgcccgctggatgaggatgaagacgccttccaa
gcgttgggggaggaagacgaagacatcgatcagttcaatgatgacacgtttggagctggg
gctgtcgacgatgactggcaggaggcgcatgagcggttggcagaactggaggagaaaccg
gtggccaacagggaacgggatggaggcggcggtgaggacacagacctgctgggtgacccc
gaggacgcgctggcagagcggctcacccggctggtgattgacagcgagctggaggacccc
gccatcatgcaggctgtgcagacgaggggccctgcgcagcagcctggggggctgaattcc
agcatctgggatagctcggccgtcctgcagcgcatccgggggccgctgctcactcaggag
atgccatcggtgtccgtgctggactacgctctgcctcagagacccgcacagcctcgagag
gaagagcgggacccctcggagcgagcgctgccccggcgttcctcgtcccctgtcatcggg
agccctcctgtccgggctgttcccatcggcacccctcccaagcaggccaccatgcccaac
ttcaaccagcagatcctgtgtccgaagcctgtccacatccgagctcccatgcaacagcgc
taccctccttcctacggcgagaggatgtcccccaaccagctctgcaacgtaccgaattcc
tccctcctgggccacccgttccctcacagcgtctctcctgtcctcacccacctgcagaga
gcgcagctgcttggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtc
tctggcctggtcggaagccccctcccctctgtcaatcctaagctgctccagggtagagtt
gggcagatgatgtctccagccggtgggtttcgtgccttctttggggctcctcccgctcct
cctccctcacagccgcagcacccgccaggccctggatcccacctgcagagcctccggccg
cagccccagatgttccgaccggacaccacccacctgcacccccagcaccgccggctcctg
catcagcggcagcagcagaaccgaaaccagcaccggagcctcaacggctctgtgggggac
cgagggggtcaccggagcagccaccaggagcagatgcgcaaagatccctatgccaacctc
atgctgcagcgggagaaggattgggtgtccaagatccagatgatgcagctgcagagcact
gatccctacctggatgactattactaccagaattacttccagaagctggagaagttgtca
gcagcagaggaagtccagggtgagggtcccaagaaggaacgcactaaactcatcacacct
caggtggccaagctggagcacgcctacaagccagtgcagtttgagggctcactcgggaag
ctgacggtgtccagtgtgaacaacccccggaagatgattgacgcagtggtgacctcccgc
agcgaggatgatgagacgaaggagaagcaggttcgggacaagaggcgccagaccctcgtc
acaatcgagaagacgtacagcctcctcctggacgtggaggactacgagagacgctacctc
ctgagcctggaaggcgagcggccggccctgatgggcgagaggaagcagaagatctgcgat
atgtatgacaatcttagggggaaggcacccgggcaggagaggctgagtgatgaccacttc
atgcagatcatgtgcatccggaaagggaaacgcctagtggcccggatcctccccttcttg
tcacccgagcaagcggccgacgtgctcatggcaacggccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgctgccctgcctgttgaggcccttctcacacgttctc
taccaccttcccttgggaacggtcaccagccttgtgcagcagctaacgaacctacctcag
agcgcgacggcgcccaccaacccacacctcactgctgtgctccaaaacaagtttggcctc
tccctgctgtacttggtgttgagccgcggggaggaattgcagagctcggatgcgaccacg
gagctaatgcaggacaaccagtggacggagctgatgcttatggcgacccgggagctcctg
cggatccctcaggcggccttggcgaagccagtgtccaccccttccaacctgatctccctc
ttctctcgctacgttgaccagcagaagctgaacctgttggagacgaaattgcacttggtg
cacgggatccggtag
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