Cuculus canorus (common cuckoo): 104063658
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Entry
104063658 CDS
T08597
Name
(RefSeq) laminin subunit beta-2 isoform X1
KO
K06243
laminin, beta 2
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04510
Focal adhesion
cuca04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104063658
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
Laminin_I
Tropomyosin
SAM_EPH
Motif
Other DBs
NCBI-GeneID:
104063658
NCBI-ProteinID:
XP_053932973
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All DBs
Position
11:8950995..8966322
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AA seq
1864 aa
AA seq
DB search
MTVLPAGLWGCRLSAWPTWSKGSQATLTGTGRSPWLPMDILVLTLLLVGVPAAGGWQEPD
LSHGCARGSCYPATGNLLVGRAPNLSATSTCGLDGPQEYCIVSHLQDSEKCFTCDSRDPS
LPESHRIENVIYLSGPHGQRTWWQSENGIEHVSIRLDLEGEFHFTHLIMKFKTFRPAAML
VERSADFGRSWKVYRYFAYNCSKLFPGIPSQPSGLVDEVLCDQRYSEIEPSSHGEVIFKV
LDPSIPVADPYSPDIQDLLRVTNLRVNLTKLHTLGDNLLDTRREVLHKYYYAVDELVLRG
SCFCHGHAAHCAPAPGAPTSSIPGMIHGRCVCEHHTQGLNCERCQDFYHDLPWRPAEGSN
TNACRRCNCNEHSQRCHFDMAVFLATGNASGAVCDDCQHNTMGRHCQLCKPFYYRHPRSD
IRSPTACAPCDCDPAGSLDGGVCDGHTDVALGMIAGQCRCKENVAGPRCDRCRHGAYGLS
HGDPQGCQLCRCDPRGTVAGSSPCDPISGDCYCKRFVAGRSCSQCVPEFWGLSYDVGGCR
PCACDFGGAYSNRCSMEDGACPCRPHLMGRQCDQVQPGFFCAPLDYYTYEAERATSHSHS
HPQLPGAIRAEVPQDCLDYDTREPGGRKGRLRHQRSPPRTSQHRTPSRRSRQQPPKPDVE
EVVRDGTGRMVTWTGSGFARVRDGAGLTFHLDNIPYPMDYNLLLRYEPESAEDWEAVVSV
SSRALPTSPRCGNLLPSEQMYRESLPHSQRYVLLSRPFCFEPSTPYEVTMRLQRAGTTQR
HPGAFILIDSLVLLPRVLELPGFHGAEGAARREELERYQCLEAFRMAPPSPLAQACARLV
CSVSALLHSGALPCQCDPQGSRSSECQVQGGQCECKPHVLGRRCDHCAPGSYGFGPLGCS
PCACSPEGSLSQLCHAVSGQCQCQPGTVGRQCDECQPGHWGFPACRPCQCNGHAEECDPR
TGSCLRCRDHTAGRHCERCQDGYYGDPVLGSGQQCRPCPCPGYPGTRHYHGSACHADEET
HHIICLCAPGYAGSRCDRCSPGYFGAPEMEGGMCRPCQCNNNIDASDPGACDPRSGHCLR
CLYNTAGPHCAQCQPGYYGNALQRSCRRCSCDPRGTLASHCTAGICDCDHSTGACTCRPN
VVGKSCDRCAPHFWSLGMPGGCEPCSCHSMHALHPTCDMVTGQCQCRPGFGGRVCSQCQE
HHWGDPEQECRACECEPVGAESLQCEQASGQCQCRPGFGGLRCDRCQRGYQDAFPRCLPC
HPCFGRWDPALGSLRDSLQRLGVQVRALWEGGSAPLLSPRRLRVLEEALERVEQLLGKQD
SLGSPFLDGLPGQLDGTRMELDDFWKQLQELEHHLDQLAQADVQHRNQLAGLNSQLGGLN
QTTSHLQVLLSTVAAAGFGESYRSILASVEDSRQAEAVANGTARELNGAQAKRRATEQVL
RQQGDTFRRGMAAARKSLREAQKRVMGLSVAGINEKICGAPGERSCEQAPCGGALCLDGV
GKRHCGGTGCRGALPVSAQALSNARNASQQLEVALGQLGVVAQKTEEVQELARGARSRAE
EALGRSQAARSRAEKATAQLRGFIRRIKAFLAEEGADPGSIELVARQVLNISLPSSPSRI
QELLREMQESIGQLEGVDAVLNSTAQGLAAARGLLAQGQDARERAEGVRDELAGTQQALE
AARTRATAVGSALRSARDAIRAAESRAKEAERRLQALEGKESRVQRRLQELAQHITALQE
RGRDARRVAQQANDRAQRATIASGMLSQDLAQVTQRYVVLKGRVSGLAGVSSGALQRVTQ
LAAEAQDLLDKASSSKRKLEELEQHFGANERAMEAKATRLQALEQRVWGLLEEIRDRANA
YATC
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgctccccgcagggctctggggctgccggctcagcgcctggcccacctggtcc
aaaggatcccaggcaacactgactggcacgggacggagcccgtggctgcccatggacatc
ctggtgctcactctcctcctggtgggagtgccggcggcggggggctggcaggagcccgac
ctgagccatggctgtgcccgcggcagctgctatccagccactgggaacctgctggtgggg
cgagcccccaacttgagtgccacctccacctgtgggctagatgggccccaggagtattgc
atcgttagccatcttcaggactcagagaaatgcttcacctgcgactcacgggacccgtcc
ctgcctgagagccaccgtattgagaatgtcatctacctgagcggtccccatggccagcgg
acctggtggcagtcagagaatggcatagaacacgtcagcatccgcctggatctggagggt
gagttccacttcacccacctcatcatgaagttcaagaccttccgccccgcggccatgctg
gtggagcgctcggcagactttggacgcagctggaaggtctaccgctacttcgcctacaac
tgctccaagctcttccctggcatccccagccagccctcaggcctggtggatgaggtgctg
tgtgaccagcgctactccgagatcgagccctccagccacggcgaggtcatcttcaaggtg
ctggacccctccatccctgtggcagatccctacagcccggacatccaggacctgctgcgt
gtcaccaacctgcgggtgaacctcaccaagctgcacacgctgggggacaacctcctggac
acacggcgcgaggtgttgcacaagtactactacgctgtggacgagctggtgctacgtggg
agctgcttctgccacggccatgctgcccactgtgccccagcacctggtgccccaacgtcc
tccatccctggcatgatccatgggcgctgtgtctgtgagcaccacacgcagggactgaac
tgtgagcgctgccaggacttctaccacgacctgccctggcgcccagccgagggctccaac
accaacgcctgccgccggtgcaactgcaatgagcactcacagcggtgccacttcgacatg
gctgttttcctggccacggggaacgccagcggggccgtgtgtgatgactgccagcacaac
accatgggccgccactgccagctctgcaagcccttctactaccgacacccccgctccgac
atccgctcgcccactgcctgtgccccatgtgactgcgacccggctggctctctggatgga
ggcgtgtgcgatgggcacacagacgtggcactgggcatgatcgcggggcagtgccgctgc
aaggagaatgtagccggtccccgctgtgaccgctgccggcacggtgcctatggcctcagc
cacggcgacccgcagggctgccagctgtgcaggtgtgacccacgaggcacggtggcgggc
agctccccctgcgaccccatcagcggagactgctactgcaaacgcttcgtggctgggcgc
tcctgcagccagtgtgtgcctgagttctggggcctgagctacgacgtggggggctgccgg
ccctgcgcttgcgacttcggtggagcctacagtaaccggtgctccatggaggatggggct
tgtccatgccgtcctcacctcatggggcggcagtgcgaccaggtgcagcctggcttcttc
tgtgccccccttgactactacacctacgaggctgaacgggccaccagccacagccacagc
caccctcagctcccgggcgcaatccgggcagaggtgccccaggactgcctggactatgac
accagggagcccggggggaggaaggggcgcctgcggcaccagcgcagcccccctcgcacc
tcccagcaccgcaccccctctcgccgcagccgccagcagccccccaagccggacgtggag
gaggtggtgcgggatggcaccgggcgcatggtgacatggacgggctcagggtttgcccgg
gtgcgggatggagctggcctgaccttccacttggacaacataccctaccccatggactac
aatttgctgctgcgctacgagcctgagtcagccgaggactgggaggccgtggtcagcgtc
agctcccgggcgctgcccaccagccctcgctgcgggaacctcctgccctcggagcagatg
taccgcgagagcctgccccacagccagaggtatgtgctgctgtcccggcccttctgcttt
gagcccagcactccctacgaggtgaccatgcggcttcagcgggctggcacgacccagcgc
caccccggtgccttcatcctcattgactcgttggttctcctgccacgggtgttggaactg
ccgggcttccatggagctgagggggcagcacgccgggaggagctggagcggtaccagtgc
ctggaggcatttcgcatggcccctccgtcccccctggcccaggcctgtgcacggctggtc
tgcagcgtctcagctctgctgcacagcggggcgctgccctgccagtgcgacccgcagggc
tcccgcagcagcgagtgccaggtgcagggagggcagtgcgagtgcaagccccacgtccta
ggccgacgctgtgaccactgcgccccaggcagctacggcttcgggcccctgggctgcagc
ccctgtgcctgctccccggagggctctctgtcacagctgtgccatgcagtgagcgggcag
tgccagtgccagccaggcaccgtgggccggcagtgtgacgaatgccagcctggccattgg
ggcttccctgcctgccggccctgccagtgcaacgggcatgccgaggagtgcgacccccgg
acgggcagctgcctgcgctgccgcgaccacaccgccggccggcactgtgagaggtgccag
gatggttactatggggaccccgtgctgggctcaggacagcagtgccggccttgcccctgc
cctggctaccctggcacacggcactaccacggcagtgcctgccatgccgacgaggagacc
caccacatcatctgcctctgcgcacccggatatgctgggtcccgctgcgaccgctgctcc
cctggctactttggggcgcctgagatggaggggggcatgtgccggccctgccagtgcaac
aataacatcgatgccagcgacccaggagcctgcgaccctcgcagtgggcactgcctgcgc
tgcctgtacaacactgccgggccacactgtgcccagtgccagcccggctactacggcaat
gccctgcagcgcagctgccggcgctgcagctgtgacccacggggaaccttggcctcccac
tgcaccgccggcatctgtgactgtgaccacagcacgggtgcctgcacttgccgtcctaac
gtggtgggcaagagctgcgaccgctgcgcaccccacttctggagcctggggatgccaggg
ggctgcgagccctgcagctgccactcgatgcatgccctgcaccccacctgtgacatggtg
acgggccagtgccagtgccgacccggctttgggggccgtgtctgctcccagtgccaggag
catcactggggagaccctgagcaggagtgccgagcctgcgaatgcgagccagtgggtgct
gagagcctgcagtgtgagcaggccagcgggcagtgccagtgccggccgggatttggcggg
ctgcgctgtgaccgctgccagcggggctaccaggacgcctttccccgctgcttgccctgc
catccgtgcttcgggcgctgggacccagccctgggcagcctgcgggacagtctgcagcgc
ctcggggtgcaggtgcgggcactgtgggaagggggctctgcacccctgctcagcccccgc
cgcctgcgggtgctggaggaggccctggagcgtgtggagcagctgctgggcaagcaggac
agcctcggcagtcccttcctcgatgggctgccagggcagctggatggcaccaggatggag
ctagatgacttctggaaacagctccaagagctggagcaccatctagatcagttggcccag
gcagatgtgcagcaccgcaaccagctagctgggctgaacagccagctaggtggtctcaac
caaaccacctcccacctccaagtcctcctcagcaccgtagccgcagctggatttggggaa
tcttaccgcagcatcttggcatcggtggaggactcgcggcaggcggaggcggtggccaac
ggcacagccagggagctgaatggggcacaggcaaagcggcgggcgactgagcaggtgctg
cgacaacagggcgatactttccgccggggtatggctgcagcacggaaatccttgcgggag
gcacagaaacgagtgatgggactcagtgttgccgggatcaatgagaagatttgtggggcg
cctggggaacggagctgcgagcaagcaccttgtggaggagccttgtgcctggatggagtg
gggaaacggcattgtggtggcacggggtgcaggggggcactgcctgtctcagctcaagcc
ctgagcaacgcccgtaatgcctcacagcagctggaggtggcattggggcagctgggtgtt
gtggcacagaagacggaggaggtgcaggagctggcgcggggggcacggagccgggcagaa
gaggctctggggcgctcgcaggctgctcgcagccgtgcagagaaggcgacagcccagctg
cggggcttcatccgtcgcatcaaggccttcctggcagaggagggagccgacccgggtagc
atcgagctggtggcccggcaggtgttgaacatctccctgcccagcagtcccagcaggatc
caagagctgctgcgggagatgcaggagagcattggccaactggagggggtggacgcggtg
ctgaacagcacggcgcaggggctggctgcagcgcgggggctgctggcacagggacaggat
gccagggagcgagcggagggcgtgagggatgagctggcggggacgcagcaggcactggag
gcagcaaggacacgggcaacagcagtcgggagcgccctgcggagtgccagggatgccatc
cgggcggctgagagcagagccaaggaggcggagcgcaggctgcaggcactggaggggaag
gagtcgcgggtgcagcggcggctgcaggagctggcacagcacatcaccgccctgcaggag
cggggtcgggatgcccgccgcgtggcccagcaagccaatgacagggcacagcgtgccacc
atcgcctcggggatgctcagtcaggacctggcgcaggtgacgcagcgctacgtggtgctg
aagggccgcgtgagcgggctggcaggggtgtccagtggggctctgcagcgtgtgacgcag
ctggcggcagaagcccaggacctcctggacaaggccagcagcagcaagaggaagctggaa
gagctggagcagcacttcggggccaacgagcgggcaatggaggccaaggcgacgcggctg
caggcgctggagcagcgtgtgtgggggctgctggaggagatccgcgacagagccaacgct
tacgccacctgctag
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