Cuculus canorus (common cuckoo): 104063792
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Entry
104063792 CDS
T08597
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03430
Mismatch repair
cuca03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104063792 (PMS2)
03460 Fanconi anemia pathway
104063792 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104063792 (PMS2)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
104063792 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104063792
NCBI-ProteinID:
XP_053936535
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Position
15:complement(14851619..14864394)
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AA seq
874 aa
AA seq
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MEAGGPCPQPAEAIKPIDRKSVHRICSGQVVLNLGTAVKELVENSLDAGATNIDIKLKDY
GAELIEVSDNGGGVEEENFEGLTLKHYTSKIQDFSDLIRVETFGFRGEALSSLCALSDVT
IFTCHKSAKVGTRLVFDHNGKITQKTPFPRQQGTTVNIQQLFYTLPVRHKEFQRNIKKEY
AKMVQLLQAYCIVSKGVRINCSNQVGQGKKNSVVSTTGSPSVKENIGAVFGQKQLQSLIP
FVQLPPNEAVCEEYGLNATDMPQNVYSITGFISRCDHGVGRSTTDRQFFFINQRPCDPAK
VVKLVNEVYHLYNKQQYPFVVLNICVDSECIDINVTPDKRQILLQEEKLLLAILKTSLME
MFGSDVNKLNVNQKLLDIAGNLKKTLPEEAEKPCVEMLADSETENPSGEGRRIMTLARLR
ESFSLHQTTESNFQSPKRVKQQHRSPRQMSLDATVNAINSRKAVLTKESESCHKMDSKIS
RYLRKSKDNADSGFCSTSESDAGCSTPEAGSCISSESVINSAEEEFCSSEEQLQNEHLKT
VGCSEKSLECNVQVLDAECKLNQVNDWTDQSKLSQEARSSSSRVKCLKSRSFRSEADDFE
TGECPEVKNIRNCMPSVDVLVEVKKKTVPLEFSMKVLAEKVKKVIQQQQKSTEAQNYRRF
KAKISPGENKVAEDELRKEISKEMFAKMEIIGQFNLGFIITKLNSDLFIIDQHATDEKYN
FEMLQQHTVLQGQKLIAPQNLNLTAVNETVLIENLEIFRKNGFDFEINENAPVTQRVKLI
SLPTSKNWTFGPQDIDELIFMLSDCPGVMCRPSRVRQMFASRACRKSVMIGTALNVQEMR
KLVTHMGEIEHPWNCPHGRPTMRHVVCLDLISAE
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgggtggaccctgccctcagcccgcagaggccatcaagcccatcgaccgcaag
tccgtccatcgcatctgttccggacaggttgtgctgaaccttggtactgctgtgaaggag
ctggtggaaaacagcctggatgctggagctaccaacattgatatcaaacttaaagattat
ggagcagaactgatagaggtttcagataatggaggtggagtggaagaggaaaactttgaa
ggcttgactctgaaacattatacatcaaagatacaagatttttctgatctaatacgtgtt
gaaacatttgggtttcgaggtgaagctttgagttcattgtgtgcattaagtgatgttacc
atttttacctgtcataagtctgcaaaggttgggactcgtttggtgtttgatcacaatggt
aaaattactcagaaaactccttttccacgacaacaaggaacaactgttaacatacagcag
ttattttatactttgccggtgcggcataaggaatttcaacgaaacatcaaaaaggaatat
gcaaaaatggtccagctattgcaggcgtactgcattgtttccaaaggagtgcggattaac
tgctctaatcaagttggccaagggaaaaaaaactccgtggtatccactactggaagtcct
agtgtaaaggaaaacattggagcagtatttgggcagaaacagttgcagagcctcattcct
tttgttcagttacctcctaacgaagctgtttgtgaagaatatggactcaatgctactgac
atgccacaaaatgtttatagtattactggtttcatttctcgctgtgaccatggtgttgga
aggagtacaactgacagacagtttttctttattaaccaacgtccgtgtgatccagcaaag
gttgtcaagcttgtaaatgaagtttatcatttatacaataaacagcagtatccatttgtt
gtccttaacatctgtgtagattctgagtgtattgacatcaatgtaactccagataaaagg
caaattctacttcaggaggaaaagcttttactagcgattttaaaaacttctctgatggag
atgtttggtagtgatgttaacaaactgaatgtgaatcagaaacttctggatattgcaggc
aacttgaagaagactcttcctgaagaggcagaaaagccttgtgtagaaatgctggctgac
tctgagactgaaaatccaagtggtgaaggaagaaggataatgactcttgctaggttaagg
gagtcattctctctccaccaaacgacagagagtaattttcaaagccctaaaagggtaaaa
cagcagcacagatctcctagacaaatgtcacttgatgccactgtgaatgctataaacagt
cgaaaggctgtcttgactaaggagtctgagagttgtcataaaatggactcaaagatatca
agatatctcagaaaatccaaagataatgcagattctggattctgtagcacttctgagtca
gatgctggatgtagtacaccagaagctgggagctgcatcagtagtgaaagcgtaattaat
tctgctgaagaagaattctgtagctcagaagaacaacttcaaaatgaacatcttaaaact
gttggatgtagtgagaaatcattggagtgtaatgttcaggtcttggatgctgaatgtaag
ttaaatcaagtgaatgactggactgatcaaagtaagttatctcaagaagccaggagctct
tcctcaagagtaaaatgtctaaaaagcagaagctttagaagtgaagcagacgacttcgaa
acaggtgaatgtcctgaagtgaagaatattaggaactgtatgccaagtgttgatgtactg
gtggaagttaaaaagaaaactgtgccacttgaattctctatgaaggttttagcagaaaag
gtaaaaaaagtaatacagcaacaacagaaaagtacagaagcacaaaattacagaagattt
aaagcaaagattagtcctggagaaaataaagtagcagaagatgaattaagaaaagagatc
agtaaagaaatgtttgcaaaaatggaaatcattggccagttcaatttaggatttataata
acaaagttgaattctgatcttttcataattgaccaacatgctactgatgagaaatacaac
tttgagatgttacaacaacatactgttcttcaaggtcagaagctgatagcgcctcaaaat
ctcaatttaacagctgtaaatgaaacggtattgattgaaaacctggaaatatttagaaaa
aatgggtttgattttgagataaatgaaaatgctcctgtaactcaaagagttaaattaata
tcgttgccaacaagcaaaaactggacttttggtccacaagacatagatgagctgatcttc
atgttaagtgactgccctggagtcatgtgcagaccctccagggtcagacagatgtttgct
tctcgagcttgcaggaagtctgtgatgattggaacagcactgaatgtgcaggaaatgagg
aaactggtcacccatatgggcgagatcgagcatccctggaactgcccccatggaaggcct
actatgagacatgttgtctgcttagacttgatatcagcagaataa
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