Cuculus canorus (common cuckoo): 104063871
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Entry
104063871 CDS
T08597
Symbol
CNOT6L
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104063871 (CNOT6L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104063871 (CNOT6L)
Enzymes [BR:
cuca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
104063871 (CNOT6L)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104063871 (CNOT6L)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104063871 (CNOT6L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_9
DUF6070
Motif
Other DBs
NCBI-GeneID:
104063871
NCBI-ProteinID:
XP_053921057
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All DBs
Position
4:77634945..77667976
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AA seq
549 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLND
NNLTRIPPDIAKLHNLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNMLRVLPYELGRLF
QLQTLGLKGNPLSQDILSLYQDPDGTRKLLNYMLDNLAVHPEQLPPRPWITLKERDQILP
SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQ
YFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFFKTEKFTLVQKHTVEFNQV
AMANSEGSEAMLNRVMTKDNIGVAIVLEVHKELFGASMKSLHVDRQLLIVANAHMHWDPE
YSDVKLIQTMMFVSELKNILDKASSRPSSPTVDPNSIPLVLCADLNSLPDSGVVEYLSNG
IVADNHKDFKELRYNECLMNFSGNGKNGASEGRITHGFQLKSAYENNLMPYTNYTFDFKG
VIDYIFYSNTHMNVLGVLGPLDPQWLVDNNITGCPHPHIPSDHFSLLTQLELHPPLPPLV
NGVHLPNRR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatcctcgcagaatttacaccatcatgtcagca
gaagaggtagccaatgggaagaagtcacactgggctgaattggagatctcgggtagagtg
cggagcttaagtacatccctttggtcgctgacacacttgactgctctgcacctcaatgac
aataatcttactcgcattccacctgatattgccaagcttcataatctggtttacctgaat
ctgtcatccaacaaactcagaagtttaccagcagaactaggaaacatggtgtctctcagg
gaattgcttttaaataacaatatgttacgggttttgccttacgaacttggacggctcttc
cagctacaaaccctgggtttgaaaggcaatcctttgtcacaagatattctcagcctctac
caagatccagacggaactcgaaagctactgaactacatgcttgacaatctagcagttcat
ccagagcagctgcctccaaggccatggattactttaaaagaacgagaccaaattctgccc
tcagcttccttcacagtgatgtgttacaatgtgttgtgcgacaaatacgccacccggcag
ctctatggctactgcccgtcttgggcactcaactgggagtacagaaaaaagggaatcatg
gaggaaattgtcaactgtgatgcagatatcattagtcttcaggaagtggaaacagagcaa
tacttcaccctttttctgccagccttgaaagaacgaggatacgatggattcttttctcca
aagtcacgtgccaaaatcatgtctgagcaggagaaaaagcatgtggacggctgtgcaata
ttcttcaaaacagaaaaatttacgctggtgcagaagcacacggtggagttcaaccaggtg
gcaatggccaactctgaaggttctgaagccatgttaaacagagtgatgacgaaggacaac
atcggagttgccatcgtgttagaggtgcacaaagaattatttggagcaagtatgaaatcg
cttcatgtggacagacagctgcttattgtggccaatgcccacatgcactgggaccctgaa
tactcagatgtgaaactcattcagactatgatgtttgtctcggaactgaaaaatatcctt
gacaaagcctcaagcaggcccagtagcccgacagtagatcctaactctatccctctggtg
ctgtgtgctgatctcaactcgttgcctgattcaggtgtagtggaatacttaagcaacggc
atagtagctgacaaccacaaggacttcaaggagttgcgttataacgagtgtctcatgaac
ttcagtggcaacggaaaaaatggggcttctgaaggaagaatcacgcacggcttccaactc
aagagcgcctacgaaaacaacttgatgccttacaccaattacacttttgatttcaaaggt
gtgattgactacattttctattccaacactcacatgaacgtgcttggtgtcctggggcct
ttggaccctcagtggctggttgacaacaacatcactgggtgtccacaccctcacatccct
tcagaccacttctcactgttaacacaactcgaactccatcctccgctcccgcctcttgtc
aacggcgtgcacttgcctaaccggaggtag
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