Cuculus canorus (common cuckoo): 104063993
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Entry
104063993 CDS
T08597
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104063993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104063993
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104063993
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
Motif
Other DBs
NCBI-GeneID:
104063993
NCBI-ProteinID:
XP_053931493
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Position
10:complement(21403388..21439874)
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AA seq
608 aa
AA seq
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MPFPPRGVPPLRSPVPAQARRLRTAGSRRLRLLPPPRPWRRPSALPAAPAMAAELEPPPA
AAVPGAAPLEAEEDEEHWLYGDDTTGKQEDGPISGHAESSHTLQDPPQENRPVSSEDREM
SQHALPSGEDDEDDSDSDSDDDDVKVTIGNIKTGAPSYMGTPMNLNLKTGRGYGASASAK
LQPKGIDLDAAGNINGLPVIEVDLDSFEDKPWRKPGADLSDYFNYGFNEETWKAYCEKQR
RLQLGLDPAPPISTENKITVQQGRTGNAEKEVENNVIKTEFKTDFLALVGGRMKAGPPPN
RKLGGTIDVIGGQAGTIRRVEGRRRDKHASEENPIQVLGDHGSKPQPPQQPQQPSQAQQP
PQQQPFAPPAGPPPPPLTGPPPPHFLHPPPPVTSVPPPLHPPGLPPPGPIPGLFPPPLAP
PPALLIPTLDGQPASYNNRQPPPFGYNSADSGFISYPPISTSHTPWVTTVDKGTSGSSSS
HWEYSGSRRERERERERDRDRDRTPTTSEYNNDDERYRYYSRERSYDFERDYRRSRDRSR
EREDRHRERRHRDKEESSKHKSSRRKQHESEEGESHRRHKHKKNKRNKEEKEASEDGAQE
GEEQDAKE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgccctttcctccccgcggggtccccccgctccgctctcccgttcccgcgcaggcgcgg
cggctgcgcactgcggggtcccggcgccttcggctcctccccccgccgcggccatggcgg
cgccctagcgctcttcccgccgccccggccatggccgccgagctggagccgccgcccgcg
gccgccgtgccgggcgccgctccgctcgaggccgaggaggacgaggagcactggctctac
ggggatgatactactggaaagcaagaagatggaccaatttctggacatgcagaatcttct
catactctgcaagatcctcctcaggagaaccggcctgtaagcagtgaagaccgagagatg
tcgcaacacgccctgccaagcggtgaagatgatgaagatgacagcgatagcgacagtgac
gatgatgacgtgaaagttactattggcaacattaaaactggagcaccatcgtacatggga
actcctatgaatctaaacttaaaaacgggtagaggttatggagcgtctgcttcagccaag
ctgcagcccaaaggtattgacttagatgctgcagggaatataaatggattgcctgttata
gaggtggatttggactcatttgaagacaaaccgtggaggaaaccaggtgctgatctttct
gattactttaattacggattcaatgaagaaacatggaaagcttattgtgaaaagcagcga
cggcttcagcttgggctggatcctgctcctcccatcagcacggaaaataagatcacagtt
cagcaaggaagaacaggaaatgctgaaaaagaagtggaaaacaacgtcatcaaaacagaa
tttaaaacagacttcttggcgctggtgggaggacgcatgaaggctgggcctcctcctaat
aggaagctgggtgggacaattgatgtgatcggtggccaggcaggcaccattaggagagta
gaaggaagacgtcgtgataagcatgcctctgaggaaaacccaatccaggtccttggagac
cacgggagtaagcctcagcctccccagcagccccagcagccttcgcaggcccagcagcca
cctcagcagcagccgttcgcaccaccagcaggcccaccgcctcccccgctcaccgggcca
cctccaccacacttcctccaccctcctccacccgttacttctgttccacctcccctccat
cctccaggtctgccaccacccggccctattccagggttgttcccgcctccgctggcaccg
ccaccagctctcctcattccaactttggatggccagcctgccagctacaacaaccggcag
ccgccaccattcggctacaactctgcagattcaggcttcatcagctacccacccatctcc
acatcacacacaccctgggtgacaacggtggacaaaggcacaagcggttccagcagcagc
cattgggagtactccggctcaaggcgtgagagggagcgggaacgggaaagggacagagac
cgagaccgcactccaaccaccagtgaatacaacaatgatgatgaacgataccgctactac
agccgagagcgcagctatgactttgagcgagactaccgccggagtagagatcgcagcagg
gagcgagaggatcgtcaccgagagcgcaggcacagggacaaggaggagagcagcaagcat
aagtcttcaagacgcaagcaacacgagagcgaggagggggagagccatcggcgccacaag
cacaaaaagaacaagcggaacaaagaggagaaggaggccagtgaagacggcgcccaggag
ggagaggagcaggatgccaaggagtaa
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