Cuculus canorus (common cuckoo): 104064277
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Entry
104064277 CDS
T08597
Symbol
LIMCH1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cuca04990
]
104064277 (LIMCH1)
Domain-containing proteins not elsewhere classified [BR:
cuca04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
104064277 (LIMCH1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
DGF-1_beta-sheet
Motif
Other DBs
NCBI-GeneID:
104064277
NCBI-ProteinID:
XP_053922272
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All DBs
Position
4:26056148..26243183
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AA seq
1770 aa
AA seq
DB search
MASAGLELGEVQPPPEPPQPELAFTEAQKWIEQVTGRSFGEKDFRSGLENGILLCELLNA
IKPGLVKKINRLPTPIAGLDNIILFLRGCKELGLKESQLFDPGDLQDTSNRVTIKNIDYS
RKLKNVLVTIYWLGKVANNCTSYSGSTLNLKEFEGLLAQMRKETEDIESPKRSIRDSGYI
DCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSQQTPSPDVVLRGSSDGRGSDSETDLPHR
KMPDVKKDDMLARRTSHGEPKSAVPFNQYLPNKSNQTFYVPAPLRKKKAEREDYRKSWST
ATSPLGDRPFSKPHPETIEEEQNETSGLCEKEKVGSMAPEASSLKSQVGLNQNEGNSIEQ
SPLCSAKETSAPKGRDAEEIRKLRRLEQAGIKVMSAAQRYGSKKQTCEDNRSIPDIILRK
DNPFMIHYQGKDSGSEDEAASRVPDLEKDDFATRRARMNQPKPIVPFNSFLIGSYTSKDK
GKLEDIKKPLQMEKQEHARRRRVHMVPARQIATSKENPLLQTEKTESEKEQQVKGPDTER
DDLTKQKSQNTLPQLQEDVISVNASITKADLETWKRLKLSGESSEEDFKCPSDTLPPAEI
TVKAAAHDDFAVRKTQANKKAGSTKQKFVHFGPVTEIDQQKWDKLVIGRASSKSAAEEES
KKDGVESHSGVESSPSTTAGNLGFAEHSDKVSKPQNECSEVAESGTDDSCRRMLSPVPAF
GIISEKQTLCGLNEHHEITEEDCIKHLPDIERDDMLVRRMGTFQRHTTSPIPMHCPPLSV
APHLLQQWQGEAVAREKDLKTSREAGSTVTQEESQEQPEIPQQQSSGTENEVKLPDPQRD
DMLARRTGAFLKQPGPNVKQFLPMPFSKQKNKQGTDRELETKIMRPEKSPQVCINSSAKP
IIQPLQEEQHGQEKCNLPSAVQDETICTAQVGECSLNEEHLDHTSKLQEVPEENKTETLS
SKDEHLQTFGSRAPVSDDAESMSMFDMRCEEEAVTQPHSKARHEKLQNIHNQLKEDETRW
QDDLARWKSRRRSASQDLIKKEAERKKMERLLSGEGTNERRKSIKTYREIVEEKERRERE
LHEAYKNAKSQEEAESILQQYIERFTISEAVLERLQMPKILERSHSVEPNSPLKDPNPLR
YLRQQSLPAPKFTATIEATIVPTTELEPSGSTGPTSPSKSVVSKAVPMLTPKPYSQPKNT
QEVLKNFKVDGKVNMNGENVNGVDEKDKECTTVIFTPSPSRSLKFDGVARGDRPSVELKK
DPSSVELSLQRPATQSVHKEPTASPVEADKASSQQVEASPGNAGPVSLACPSPGSDQKQF
KSTAACASPVVKRLEFLPSPVSSEEAVLSEKDVKKPEMEQQKEAELPATVEMTKPKALEQ
EGSVVLPFLKKLPETSQVTLQNSVLQEPPRWAAVPLRVRNNWRRSQFFSQSADSDNGDKS
NRFNFWSWDPEEERKRQERWQHEQERLLQEKYQKEQDKLKQEWEKAQREVEEEERRYYEE
ERKIIEDTVVPFIVSSNSAELLSSSSSTTEGNKTVNTTDSNSSPEEGKQKEVTRQKKLLW
EQDSISSSKSNENELWQEKRSGNKVLSGRPETGILKGGEQEHQVPMMERSSPARLNLPLT
QDVSWNQQFLTKQSPHRAENIWQRQFLGQSAGQQPCSAGEVSRAGYHENFRSGPSSPCSP
AAPSHSPNRYKRSVSGKKLCSTCGLPLGKGAAMIIETLGLYFHIQCFRCGICKGQLGDTT
SGTDVRIRNGLLNCNDCYIRSRTAGQPTTL
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgccgggctggagctgggagaggtgcagcctcccccggagcccccccagccc
gagctggccttcaccgaggctcagaagtggatcgagcaagtaacaggcagaagttttggt
gagaaagattttcgttctggattagaaaatggcattcttctgtgtgagttgctgaatgca
ataaagccaggattggtaaaaaagatcaacagactaccgacccccattgcaggtttggat
aatataatcttattcttaagaggttgcaaagagctgggacttaaagaatctcagcttttt
gatcctggtgacctgcaggacacgtcaaacagagtaaccataaagaacattgactatagt
aggaagctgaaaaatgtattagtcaccatttattggctagggaaagtggcaaacaactgc
acatcgtatagtggatcaaccctgaacctgaaggagtttgaaggtttgctggcacaaatg
agaaaggaaacggaggatattgagagtccaaagcgcagcattcgtgacagcggctatata
gactgctgggactctgaacgcagcgattccctctccccaccccgccacggcagagatgat
tcctttgacagtctggactcctttggctcccgctcgcagcagacaccatctccagatgta
gtgctcagagggagtagtgatgggagaggaagtgactcagaaactgatctgccacacaga
aagatgccagatgtgaaaaaagatgatatgttggcaaggcggacctcacacggtgaaccc
aagtcagctgtgccttttaaccagtacctcccaaacaagagtaatcagactttctatgta
cccgctccacttcggaaaaagaaagctgaacgagaagattaccgtaagagctggagcaca
gcgacttcaccgctaggagacaggcctttcagcaaaccccaccctgaaaccatagaagaa
gaacagaatgaaacatcaggactgtgtgaaaaggagaaagtgggctccatggctcctgag
gcaagctcccttaagagtcaagtaggtttgaatcaaaatgaaggaaactccatagaacag
tctcctttgtgcagtgcaaaagaaacatcagcacctaaggggagagatgcagaagagatc
agaaagttaagaagacttgaacaagctggcattaaggtgatgtcagcagcccaacgctat
ggaagtaaaaaacaaacatgtgaagacaacagaagcatcccagacatcatccttcgcaag
gacaaccccttcatgattcactatcaagggaaggattctggttcagaagatgaagcagcc
agcagagttcctgatttagaaaaggatgactttgccacccggagagccagaatgaatcaa
cccaagcccatagttccgtttaactcatttttaattggatcctatacaagtaaagataaa
ggtaaactggaagatattaaaaaaccattgcagatggaaaagcaggaacatgcaagaaga
agacgggtgcacatggtaccagcaaggcaaatagcaacaagcaaagagaacccacttctg
caaactgagaagactgagtcagagaaggaacagcaggtgaaagggcctgatactgagaga
gatgatttgactaaacagaaatctcaaaacacccttcctcagctacaagaagatgtgatt
tctgtgaatgcctctataacaaaagcagatctggagacctggaaaagattgaaactgtca
ggggagtccagtgaagaagatttcaaatgtcccagtgacactctgccacccgctgaaatc
acagtgaaagcagcagcccatgatgattttgctgtccgcaaaacccaagcaaacaaaaag
gctggtagcaccaagcagaagttcgtgcattttgggccagtaactgagattgatcaacag
aagtgggacaaacttgttattggcagagcttcatccaagagtgcagcagaagaggaaagc
aagaaagatggtgttgagagtcactctggtgttgaaagctctccttcgaccactgctggc
aatcttgggtttgctgagcacagtgataaagtatctaagccacagaatgagtgcagtgag
gtagccgagtcaggaacagatgactcttgcaggagaatgttgtcacctgtcccggctttt
ggcatcatctctgagaaacaaactctctgtggtttgaacgaacatcacgaaatcactgag
gaagactgcatcaagcatttaccagacattgagagagatgatatgttggttaggaggatg
ggaacttttcagaggcataccactagccccatccccatgcattgccctccgctgtcagta
gctcctcatctactgcagcagtggcaaggggaggcagtagctcgtgagaaggatttgaag
acttcacgggaagcaggaagtactgtcacacaagaagaaagccaagaacagcctgaaatc
cctcagcagcagagcagtggaacagaaaacgaagtgaaattgccagatccacaaagagat
gacatgttggccagaagaactggagcttttctaaaacagccggggcccaatgttaagcag
ttccttcccatgccattttcaaagcagaagaataagcagggaacagatagagagcttgag
acaaaaattatgaggcctgaaaaaagtccacaagtctgcattaatagctctgcaaaacct
ataatacaaccacttcaagaggagcagcatgggcaggaaaaatgcaatctcccttctgca
gtacaagatgagactatttgtactgcccaagtgggtgaatgtagccttaatgaagaacac
cttgatcatacttctaagcttcaggaggttcctgaggaaaacaaaacggagacattgtca
tccaaggatgagcatctgcaaacatttgggtccagagctcctgtgtctgatgacgcagag
agtatgagcatgtttgacatgagatgtgaggaagaagctgtgactcagcctcatagcaaa
gctcgccacgagaaactgcagaacatacacaaccagctgaaagaggacgagaccagatgg
caagatgacctggctcggtggaagagtcgtcgaaggagcgcttcacaggatttaataaaa
aaagaagctgagagaaagaaaatggaaaggttgttgtctggagagggaacaaatgagcgc
agaaaaagcatcaaaacctaccgagaaattgtggaagagaaagagagaagagagcgggag
cttcatgaggcatacaaaaatgcgaaatcacaggaggaggccgagagcatcctccagcag
tacattgaaagattcactatcagtgaagctgtcctcgagcgtctgcagatgccaaaaatt
ctggaaagaagccattcagtggagccaaattccccactgaaagacccaaatcctctgaga
tatttaaggcagcagtcgctgcctgctccaaaattcactgccaccattgaagcaactatt
gttcccaccactgaactagagcccagtggttcaacgggacccacatctcccagcaaaagt
gttgtctccaaggctgtgcctatgctgacacccaagccttactcacaacccaaaaataca
caggaagttttaaagaactttaaggtagatggaaaagtcaatatgaatggagaaaatgtc
aacggcgtggacgagaaggataaagagtgtacaacagtgatatttactccttcgccaagc
agatctctgaaatttgatggagtagccagaggggacaggccctcagtagagttgaagaag
gacccctcaagtgttgagctcagtttacagaggcctgccactcagagtgtgcacaaagag
ccaacagcctcgccagtggaagcagacaaagcctccagccagcaggtcgaggccagccct
ggaaatgcaggacctgtgagcctggcttgcccatccccaggttcagatcaaaaacaattc
aagtcaaccgcagcttgtgccagccctgttgtgaagagattagaatttcttcccagtcct
gtctcttcagaagaagctgttttaagtgagaaagatgtgaagaaacctgaaatggagcaa
cagaaggaagcagagctccctgctacagtggagatgacaaaaccgaaagccctggaacaa
gaggggagtgtagtattgccatttttaaagaaactacctgagacaagccaagttactctg
cagaattctgttctacaagagccgccccgctgggccgcggttccgcttagggttcgcaac
aactggcgacgctcacagtttttctcgcagtcagctgattctgataatggtgacaagtca
aatcgtttcaatttctggtcctgggacccagaagaagaacgaaaacgccaggaaaggtgg
cagcatgagcaagaacgtttgcttcaggagaagtatcagaaggagcaggacaagctgaaa
caggaatgggaaaaggcccagagagaagttgaagaggaggaacgtagatactatgaagag
gaacgtaagataattgaggatactgtagttccattcattgtttcttctaactctgctgag
ctcctctcctcttcttcctccaccactgaaggaaacaagacagtgaacacaactgattca
aacagctctccagaggaaggcaaacaaaaagaagttacaagacagaaaaagctgctatgg
gagcaggacagtatatcatcttcaaaaagcaatgaaaatgaactctggcaagaaaagagg
agtggaaataaagtactctcaggacgcccagagacgggtatcttgaaaggtggtgaacag
gagcaccaggtgccaatgatggagcgcagctcacctgccaggctgaatctgccattgact
caagatgtctcttggaatcagcagtttctgacaaagcagtccccacatcgcgcagagaac
atttggcagagacaattcctgggacagagtgcaggacaacagccatgctctgcaggagaa
gtgagcagggcaggttatcatgagaacttccgatctgggccatcatctccctgctctccg
gctgctccgagtcattcacccaacaggtacaaaaggtctgtcagtggaaagaagctttgt
tctacctgtgggcttcctcttggaaaaggagctgccatgattattgaaacgcttggtctt
tatttccatattcagtgcttcaggtgtggcatttgcaagggacagctgggagatacaaca
agtggaacagatgtcaggatcagaaatggtcttcttaactgcaacgactgttatatccga
tccagaactgctggacagccaactacattgtga
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integrated database retrieval system
