Cuculus canorus (common cuckoo): 104064282
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Entry
104064282 CDS
T08597
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03030
DNA replication
cuca03410
Base excision repair
cuca03420
Nucleotide excision repair
cuca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104064282 (RFC1)
03410 Base excision repair
104064282 (RFC1)
03420 Nucleotide excision repair
104064282 (RFC1)
03430 Mismatch repair
104064282 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cuca03032
]
104064282 (RFC1)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104064282 (RFC1)
DNA replication proteins [BR:
cuca03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
104064282 (RFC1)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
104064282 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
AAA_22
BRCT_2
AAA_30
AAA_5
Rad17
AAA_18
RuvB_N
AAA_16
AAA_17
RNA_helicase
AAA_33
nSTAND3
AAA_7
AAA_19
NTPase_1
Motif
Other DBs
NCBI-GeneID:
104064282
NCBI-ProteinID:
XP_053920585
LinkDB
All DBs
Position
4:complement(25221029..25259096)
Genome browser
AA seq
1150 aa
AA seq
DB search
MDIRKFFGVVPSGKRQVCETVTKSEKIKNGEGPSSGKKKETKVNNSPSEDDSKVKRTNKK
RRIIYDSDSEEEVQPVKKSKKPSEKKAATSKLGKVLKQDPVVYISETDEEDDFVDKGISL
KPKENGTSAFGCPGIITVKKDDVKPRAKSKQKISPVKQTPTSALDFFGTSSVQRSEKKLV
ASKRKEPSQCRDDTVDDEAIARQLQIEEDSELERQLHEDEEFAKTLAMLDETPQKKKVRK
DSGGEQTVLSLKSSPNETERYKQMERATNSTGEAKSNTAKQQTKSEHSKGSRLSPKSSDD
KTARELIDKTLPLKPSSKLVSPKQKEEIAEKERGAQSLVSKQKNASGKEEKSTPKKEKIS
PKKSESVSPEDSEKKRTNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLEC
IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASALGTKVIDEDGLFDLIR
TMPGKRSKYELAAEMEAKKAEPRPKRTPQKAEAGKRNFSPFKRNADNKKNKSTPEKEDAV
KSVKKETSAVRKLMDFKHQTVEKKEASKPKGNLVSEINEDATEKLLWVDKYKPVSLKTII
GQQGEQSCANKLLRWLRNWHKNTLEDGPAKTNKTGGKDDGTGFKAALLSGPPGVGKTTTA
SLVCKELGYSYVELNASDTRSKNSLKEVVAESLNNTSIADFCSGTSSSVSGKHVLIMDEV
DGMAGNEDRGGIQELIGLIRHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKG
AMMSIAFKEGLKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKK
DIKLGPFDVVRKVFATGEEASRMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLK
KHLVLLSRAADSICDGDIVDKQIRSKQNWNLLPTQAIYASVLPGELMRGHMSQFPVFPSW
LGKFSSTGKHDRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQPLKDFGTDGVQEAI
TFMDSYCLMKEDVENIMEISMWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYSLNSVKT
FKQQSGSMVALEPSEDLNVEEIQSDEDEQDTVESDAMIKQKKAKSSKPTKREKNEETTKK
EGKRKEKTRQ
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaagttctttggcgttgtaccttctggaaagcgacaagtgtgtgagact
gtgacaaagagtgaaaaaattaaaaatggtgaaggaccctcaagtgggaagaaaaaggaa
actaaagtgaataattcacccagtgaagatgattccaaagtaaagcggacaaacaagaaa
agaagaataatctacgattcagattcagaagaggaggtgcagccagtgaaaaaatccaag
aagccatctgagaaaaaagcagctacttcaaagcttggtaaagttctgaagcaggatcct
gttgtttatatttcagagacagatgaagaagatgactttgtcgataaaggaatttctctg
aaaccgaaggagaatgggacgtcagcctttggttgtccaggaataattacagtgaaaaaa
gacgatgtaaaaccacgagctaagagcaaacaaaaaatatctccagtgaaacagactccc
acctcagcgcttgatttctttgggacaagtagtgttcagcgatcagaaaagaaactggta
gcaagtaaaaggaaagaaccttcacaatgcagagatgacacagtagatgatgaggcaatt
gctagacaactgcagattgaagaagattcagagctggagagacagctgcatgaagatgag
gaatttgctaaaactttggccatgctggatgaaacaccacagaagaaaaaggttcggaaa
gattcaggaggagagcagacagtgttgagcctcaagagcagtcctaatgagacagaaaga
tataagcagatggaaagagcaacaaactcaacaggtgaagcaaagagtaacactgcaaag
cagcaaactaaatccgaacactcaaaagggtctcgtttatcaccaaagtcatctgatgat
aaaacagcaagagagctgatagataaaacgttgcctttgaaacctagctctaagcttgtc
tctccgaaacaaaaagaagagattgctgaaaaggaaagaggtgctcaaagtttggtatca
aaacaaaaaaatgcttcagggaaagaagagaagtcaacaccaaagaaagagaaaatttct
ccgaagaagtctgagtctgtaagtcctgaggactctgagaagaagcgaaccaattatcaa
gcctaccgaagcttccttaatcgcgagggaccgaaagcgctgggttccaaagagatacct
cagggagctgaaaactgcttggaaggcctgacattcgtaattacaggtgttctggagtgt
attgaaagagatgaggccaagtctctgattgaacgttatggaggaaaagtaactggcaac
gtcagcaagaagacaaactacctggtcatggggcgagactgtggccagtctaagtgtgaa
aaggcatcagctttagggacgaaagttattgatgaagatggcctgtttgatcttattcga
acaatgccgggcaaaaggtccaaatatgagctggcggctgaaatggaggcaaagaaggca
gagcccagacctaaaaggacaccacagaaagctgaagctggaaaaaggaattttagcccc
ttcaaaaggaatgctgataataaaaaaaataagtctactcctgaaaaagaagatgctgtc
aaatctgttaagaaagaaacctctgctgttcgaaaactcatggacttcaaacaccaaact
gtagagaagaaagaagcatcaaaacctaaggggaacttggtttctgagataaatgaagat
gcaacagagaaattgttatgggtagataaatataagcctgtatctcttaagacaataatt
ggacagcagggtgagcaaagctgtgccaataaactgctccgatggctccgaaattggcac
aagaatacgttggaagatggaccagcaaagaccaataaaactggaggcaaagatgatggt
actggttttaaagcagcattactttctggtccacctggagttggtaaaactactacagct
tctttggtttgtaaggagctgggatatagctacgtggagctgaacgccagtgacacccgc
agtaagaacagtctaaaggaagtagttgccgaatcacttaacaacacaagcattgcagac
ttctgttctggcacatcttcatcagttagcgggaaacatgtattgatcatggatgaagtg
gatggtatggcaggcaatgaagacagaggagggattcaggaattgattggtttgatacga
cacacaaagatacctatcatctgtatgtgtaatgatcgaaaccatcctaaaattcgttcc
ttggtccactattgttttgatcttcgttttcagagacctcgtctagaacagattaagggt
gccatgatgtctattgcatttaaagaaggtttaaaaattccaccacctgccatgcaagag
ataatcctggcagcaaatcaggacatcagacaggttttacataatcttaatatgtggtgt
gcaaaagataaatcattgacttacgatgaggctaaaacggatgctagcagagccaagaag
gatatcaaactgggcccttttgatgttgtccggaaggtttttgcaactggagaggaggct
tctcgtatgtctcttatagacaaatcggatcttttcttccatgattattctctagcacct
ctgtttgtccaagagaactatgtacatgtgaaaccagccgctgctggaggaaatctgaaa
aagcacttggtacttctgagtcgcgcagctgatagtatatgtgatggtgatatagtggac
aaacagattcgtagcaagcaaaactggaaccttcttccaacacaggcaatttatgcaagt
gttctccccggggagctgatgagaggtcacatgtctcagtttcctgtctttcccagctgg
ctggggaaattttcatccacaggcaaacatgatcgtatcattcaagaactggcaatgcat
atgagcctcagaacccagacgtgcaagaggacggtaaacatggagtatttgtcgtatttg
cgggatgcacttgtccagcccttgaaagacttcggaacagatggtgtacaagaagctata
acattcatggactcttactgcttgatgaaagaagatgttgaaaatatcatggaaataagc
atgtggggaggcaaacccagtcctttttcaaagctggatcccaaggtcaaagcagctttc
acacgtgcctataataaagaggcacacctgactccatattcacttaattctgtcaagaca
tttaaacagcagtcagggtctatggtggccctggaaccgagtgaagacttgaatgtggaa
gagatccagtctgatgaggatgagcaggatactgttgaaagtgatgcaatgattaagcaa
aaaaaggcaaagtcttccaagccaacaaaaagagagaaaaatgaagaaacaacaaagaaa
gaagggaaaagaaaagagaaaacaagacaataa
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integrated database retrieval system
