Cuculus canorus (common cuckoo): 104064455
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Entry
104064455 CDS
T08597
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03420
Nucleotide excision repair
cuca04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104064455 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
104064455 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cuca04121
]
104064455 (DDB1)
03400 DNA repair and recombination proteins [BR:
cuca03400
]
104064455 (DDB1)
Ubiquitin system [BR:
cuca04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
104064455 (DDB1)
DNA repair and recombination proteins [BR:
cuca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104064455 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
104064455 (DDB1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
104064455
NCBI-ProteinID:
XP_053923482
LinkDB
All DBs
Position
5
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE
TDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtcgtgacggcgcagaagccgacggccgtgaacgcctgcgtcacc
ggccacttcacctcagcggaagatttgaacctgctgattgccaagaacacacgactagag
atctacgtggtgacagccgaggggcttcgacctgtcaaggaggtggggatgtacggcaaa
accgctgtcatggagctcttccgccccaagggggagagcaaggatttgttgttcatcctg
acagccaagtacaacgcttgcatccttgagtacaagcagaacggagacaacattgatatc
ataacccgtgctcatggcaacgtgcaggatcgcatcggccgtccctcggagaccggcatc
attggcatcatcgaccccgagtgccgcatgatcggcctgcggctctatgatggcctcttc
aaggtcattccattggaccgggagaacaaggagttaaaagctttcaatatccgcctggaa
gagctccaagtcatcgatgtgaagttcctttacggctgccaggctcccaccatctgcttc
gtctaccaggacccccagggtcgccatgtcaagacctatgaggtgtccttgcgcgagaag
gagtttaacaaaggtccttggaaacaggagaacgtagaggctgaagcctccatggtcatc
gcagttccagagccttttggaggcgccatcatcatcgggcaggagtccatcacctatcac
aatggagataaatacttggctatcgctcctcctatcatcaagcaaagtacgattgtgtgc
cacaaccgcgtggatcccaatgggtcccgttacttgcttggggacatggaaggccgcctc
ttcatgctgctactggagaaggaggaacagatggatggcactgtcaccctgaaggacctg
cgcgtggaactgctcggcgagacatccattgcagagtgcttgacctacctggacaatgga
gttgtgtttgtgggttctcgtcttggagattcacagcttgtgaagctcaatgtggacagc
aacgagcagggctcctacgtggtggctatggagaccttcaccaacctcggtcccatcgtc
gacatgtgtgtagtggacctggaaagacaaggccaaggacagctggtcacatgctcgggt
gcattcaaagagggttccctgaggatcatccggaatggcattgggattcacgagcatgcc
agcattgacctgccagggatcaaaggattgtggcccctgaggtcggattctcaccgtgag
acggacaatatgttggtgttgtcttttgttggccagaccagggtcctgatgttaaatgga
gaagaagtagaagagacggagctcacggggtttgtggatgatcagcagacgttcttctgc
ggcaatgtggcgcatcagcaattgatccagatcacctctgcctctgtgagactggtgagc
caggagcccaaagccctggtgagtgagtggaaagagcccaacggaaagaacatcagcgtg
gcttcctgtaacagtaaccaggtcgtggtggctgtgggacgggccctgtactacctggag
atccgaccacaggagctcagacagatcagctgcacagagatggagcatgaagttgcctgc
ctggacatcacccctctgggggacacgaatgggatgtccccgctgtgtgccatcgggctc
tggactgacatctctgcccgcatcctaaagctgccgtccttcgagctgctgcacaaagag
atgctgggaggagaaatcatccctcgctccatcctgatgacaacctttgagagcagccat
taccttctctgcgccttgggggacggagcactcttctactttgggctcagcctcgagaca
ggcctgctcagtgaccgcaagaaggtgacccttggcacccagcccaccgtcctgaggaca
ttccgctctctgtccaccaccaacgtatttgcctgctctgaccgccccactgtcatctac
agcagcaaccacaagctggtcttctccaatgtcaacctgaaggaagtgaactacatgtgt
cccctcaactcagatgggtatcctgatagcttggcgttggccaataacagcaccttgaca
attggcaccattgatgagatccagaagctgcacatccgcacagttcccctctacgaatca
cccaggaagatctgctaccaggaggtatcacagtgttttggcgtgctctcgagtcgtatc
gaggtgcaggatgccagtggtggcaccacggcactcagacccagtgccagcacccaggcc
ttgtccagcagtgtgagcaccagcaagctgttctccagcagcacagcgccacatgagaca
tcctttggagaggaggtggaggtgcacaacctgctcatcatagatcagcacacctttgaa
gtgcttcatgctcaccagtttctgcaaaacgagtatgccctcagcctggtctcctgcaag
cttggcaaggatcccaacacctacttcatcgtgggcactgccatggtctatcctgaggag
gcagagcctaaacagggccgaattgttgtcttccactactccgatgggaagctgcagagc
ctggctgagaaggaagttaagggggccgtgtattccatggtggagttcaacgggaaactg
ttagccagcatcaacagcacggtgcgcctgtatgagtggacagcagagaaggagctgcgc
acggagtgcaaccattacaataacatcatggcgctctacttgaagacaaagggagacttc
atccttgtgggagatctgatgcggtctgtcctcctccttgcgtacaagcccatggaagga
aactttgaggagattgcccgagacttcaatccaaattggatgagtgctgtggagatcttg
gacgatgacaacttcctgggagcagagaatgctttcaatttgtttgtgtgccagaaggac
agtgcggccactactgacgaggagcgccagcacttgcaggaggtgggattgtcccacctg
ggagagttcgttaacgtcttctgccacgggtctctggtcatgcagaacctgggtgagacc
tctacaccaacacagggctcggttctcttcggcaccgtcaatggcatgatcggactggtg
acctcactgtcagagagctggtacaacctcttgctggacgtgcagaacaggctgaataaa
gtcatcaagagcgtggggaagatcgagcattccttctggagatcctttcacactgaacgc
aagacagaaccagcaacaggattcatcgatggtgacctgatcgaaagcttcctggacatc
agcaggcccaagatgcaggaggtggtggcaaacttacagatcgatgatggcagcggcatg
aagagggaagccaccgtggacgacctgataaagatcgtggaggagctgacccggatccat
tag
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integrated database retrieval system
