Cuculus canorus (common cuckoo): 104064922
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Entry
104064922 CDS
T08597
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04140
Autophagy - animal
cuca04148
Efferocytosis
cuca05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104064922 (VPS16)
04148 Efferocytosis
104064922 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104064922 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104064922 (VPS16)
Membrane trafficking [BR:
cuca04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104064922 (VPS16)
Hops complex
104064922 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
104064922
NCBI-ProteinID:
XP_053921680
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All DBs
Position
4:533923..546341
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AA seq
837 aa
AA seq
DB search
MDCYTANWNPLGEEAFYRKFELYTMEWGLKEDLRDCLVAAAPYGGPIALLKNIRKEKSPS
ARPLLEIYSASGLLLAAIPWKSGRLVQLGWTASEDLLCIQEDGTVLIYNLFCEFKRHFSM
GNEVLQNHVLEAKVFHTEYGTGVAILTGAHRFSLATNIDDLKLRRMPEVPGLQKPPSCWA
VLSQDRVTIVLLAVGQDLYLLDNTSCSVVTPPGMSPSAGSYLRMAVSFNYRCLALFADSG
YIWMGLTSLKEKLCEFNCSIRSAPKQMVWCMRPRSRQRAVVMAWDRQLMVVGNSTECIQF
VLDEDSYLVPELDGVRILSRTSHEFLHEIPEASQEIFKIASMAPGALLLEAQKEYEKESQ
KADEYLREIKDQKLLPEAVSQCIEAAGYEHEPDTQKSLLRAASFGKCFIDKFPPESFVRM
CQDLRVLNAIRDYQIGIPLTFTQYKRLTIEVLLDRLVLRRLYPLAIRICEYLRLSEIQGV
SRILAHWACYKVQQKDKSDEEVAHAINQKLGDTPGISYSEIAARAYDCGRTELAIKLLEY
EPRSGEQVPLLLKMKRSKLALSKAIESGDTDLVYTVVLHLKNELNRGTFFMTLQNQPVAL
SLYRQFCKHQERETLKDLYNQDDNHQELGNFHVHSSYSEKRIEGRVGALQNAVDEYYKAK
NDFAAKATEDQIKLLRLQRHLQEDFDKPYLDLSLHDTVSNLILDGHHKRAEQLYREFKIP
DKRYWWLKLSALANRGDWEEMEKFSKSKKSPIGYLPFVETAVKHHNRYEAKKYAPRVSPE
QRVKAFVLVGDLDQAADAAIERKNETEMNFVLSKCAAGTNGAVAEKLNRARAQLLKK
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggccaactggaacccgctgggcgaggaggccttctaccggaagttc
gagctctacaccatggagtgggggctgaaggaggacctgcgggactgcctggtggccgcc
gccccgtacggggggcccatagctctgctgaagaacattcggaaggagaaatcccccagc
gcccgcccgctgctcgagatctactcggcctcggggctgctcctggccgccatcccgtgg
aagagcggccggctggtgcagctgggctggacggccagcgaggacctgctctgcatccag
gaggacggcaccgttctcatctacaacctcttctgcgagttcaagcgccacttcagcatg
ggcaacgaggtgctgcagaaccacgtgctggaggcgaaggtgttccacacggagtacggc
accggcgtggccatcctcaccggtgcacaccgcttctctctggccaccaacatcgatgac
ctgaagctgcgcaggatgccggaggttcccggtctccagaagccaccgtcctgctgggct
gtgctgagccaagacagggtcacaatcgttctgctggcggtgggacaggacctctacctc
ctggataacacctcctgctccgtcgtgacccctcccgggatgagcccctcggctggttcc
tacctccggatggccgtctccttcaactaccgctgcctggcactcttcgccgactccgga
tacatctggatggggctgacgtccctgaaggagaagctctgcgagttcaactgcagcatc
cgatctgctcccaagcagatggtttggtgcatgcgtccccggagccggcagcgtgcggtg
gtgatggcctgggaccggcagctgatggtggtggggaactccacggagtgcatccaattt
gtcctggatgaggactcctacctggtgccagagctggatggggtccggatcttgtctcgc
acctcccacgagttcctgcacgagattccagaggccagccaggagatcttcaagatcgcc
tccatggccccgggcgcgctcctgctggaggcacagaaggagtacgagaaggagagccag
aaggctgacgagtacctgcgggagatcaaggaccagaagctgctcccggaggcggtgagc
cagtgcatcgaggccgccggctacgagcacgagccggacacccagaagtcgctgctgagg
gcagcctccttcgggaagtgcttcatcgacaaattccctccggagagctttgtacggatg
tgccaggacctgcgggtgctcaacgccatccgggactaccagatcggcatcccgctcacc
ttcacccaatacaagcggctcaccatcgaggtcctgctggacaggctggtcctgcggcgg
ctctaccccttggccatcaggatctgcgagtacctgcgcctctccgagatccagggtgtc
agccgcatcctggcccactgggcctgctacaaggtgcagcagaaggacaaatccgatgag
gaggtggcccacgccatcaaccagaagctgggcgacacgccgggcatctcctactctgag
attgccgcccgggcgtacgactgcggccggacagagctcgccatcaagctgctggagtac
gagccgcgctccggggagcaggtcccgctgctgctgaagatgaagcggagcaagctggcc
ctcagcaaagccatcgagagtggggacaccgacctggtctacaccgtggttctccacctg
aagaatgagctgaaccgcggcaccttcttcatgacgctgcagaaccagccggtggccctg
agcctctaccgccagttctgcaagcaccaggagcgggagacgctgaaggacctgtacaac
caggacgacaaccaccaggagctcggcaacttccacgtccactccagctactcggagaag
cgcatcgaagggcgagttggcgctctgcagaacgccgtggatgagtactacaaagccaag
aacgacttcgcagccaaggccacggaggatcagatcaagctcctgcggctccagcggcac
ctccaggaggacttcgacaagccctacctcgacctctcgctgcacgacacagtctccaac
ctcatcctggatgggcaccacaagcgagcggagcagctctaccgggagttcaagatcccg
gacaagaggtactggtggctgaagctcagcgccttggccaaccgcggggactgggaggag
atggagaagttctccaagagcaaaaagtcacccattgggtacctgcccttcgtggagacc
gccgtgaagcaccacaaccgctatgaggccaagaagtacgcgccccgcgtcagccccgag
cagcgcgtcaaagccttcgtcctggtgggggacctggaccaagcggccgacgctgccatc
gagcgcaagaacgagacggagatgaactttgtgctgtccaagtgcgcagccggcaccaac
ggcgccgtggccgagaagctgaaccgggctcgagcgcagctcctcaagaagtga
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