Cuculus canorus (common cuckoo): 104065702
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Entry
104065702 CDS
T08597
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cuca03036
]
104065702 (SHOC1)
Chromosome and associated proteins [BR:
cuca03036
]
Eukaryotic type
Meiosis-specific proteins
Others
104065702 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
104065702
NCBI-ProteinID:
XP_053910007
LinkDB
All DBs
Position
Z:47473604..47523789
Genome browser
AA seq
1452 aa
AA seq
DB search
MIDISVLDQWKTSLSLEDFLEKKPISSVEFHVSNELAEVIPSSNPCSQTDTEEPFLLKEI
VFKEEPTQENYLKTHCATEFKEQWQDLCMEEELVFIDNLENFRKKLPTSSVLLSRLQLFL
VKDPLLDYEEQNLTEENIFRECLIFQNDMHMQESGKELQEIKENFCTASLKDEEYLTLPL
QLEFCHPSNDRSDSVNIPSYLELKELLNVAPETVADEDMWKELIKEDVKAEITYKIEISD
YCPTPQEVCSSDRGSTLEFCESAKYIPYLKDEMEVPLSPPCRQQRLWVHFLCPELQEEPF
PLSDNSILITEPSREYSESLVWQSEKYRDNMSSLLLIEHQTDKLAYEHHSLTELKEMLPV
EVEAPMLCSLKEGWWLHLHLHPISIETLEQLNMDISNANSLLSTEVETFTKFTTYQLERW
LEERNSVTNQELLSAGRHQSEKVINLCMSLQTQRQCFAPHMTAASSAKIHSTNTSVEELS
EGNIKKNKMEEAIYFLSQEKKTLKSPESDSCKDVSFKQDNSSSNQKPASFALATKWEYDD
SDLSNFIMLRSKYTLTQREDKDDANSPGKGLQSDEQPTDFHKEDSSVCETVRTELKDQES
EDSVTVDIQASENQCQAYCLLEEAANPVLKDLTDLGVLASVNWSFDSIKFDHTRFFLKQQ
EKIICDRFKEGKVNEKEIMLFRHAALVHLLVTVRDLLLTCDLDTALVYLSKARDIYKNIL
ESCLNNIWRQLKIIQYSSQKKHETNPKITELQCQILKWKRSYGEEHSVKVNNVNNFSEQT
KPLQTVNNYKTSFSEGWLMEESLIIIFPIHHIADVQQLCHLNVSSFLLLFFFQILIITRM
DSEREKAALLHTLSKVEGLKATDLNSEKKGSCLSCKDIIRNLSRYSCVIVHNQQIGADFP
WTHFSLVVEYDYSENSCWKNLCKNLSVTYMTFKTTLPETIQTRDHCGSFLLEVQIPYVFL
TTEGLLNMPDILQLLESKYSISFVERCSSYSLKLFGSTDRYVVLTVDECTAIFLQCMEEL
NYEQSRDNVILKLMALSLQYTCCWIVFYSRERLSLEYSLRGDTLLNLVLIYATVIELTQK
SEDFEVKVVLTPGIEETALVIRQIADNILIASNISPHEWLDKSWLSVLPSETEKCLLAFP
CINPLVAQIMLKKESSLNRLFLASFDQLQELLPKLPKKVLKHFSDITSSYTLNAAPSLET
AVKGASAPENSNNFYPDHKQNHQSLQLLGKAQNSAGTFLMSSEAVIPPLNHHQGFFDSEL
PSFMEKKSCSSEVITRRKQNFFAVPKDCEEFAHLDVTSSLHTQRQPFRMHYNSDHSSKNS
EKGDLFATFNDYAPGESSQHILEELRDKTFKTPEILIDQTPWNDSSSTCPRDSFASDGFL
SDFFIDPDELQSLNSHQIESKGKRKQSPPFLWTEQKFRTDSGFAEVPEFKKKRLAYERVP
GRRDGQTRLKFF
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgattgatatttcagtattggaccaatggaagacaagtttatctcttgaggatttcctg
gaaaagaaacctatttcttctgtagagttccatgttagtaatgaattagcagaagttatc
ccaagttcaaatccctgctctcagactgacacagaagaaccttttttgcttaaggaaatt
gtttttaaggaagaacccacccaagaaaattatttgaagactcactgcgccactgaattt
aaagaacaatggcaagatttatgtatggaagaggaacttgtttttattgacaatcttgaa
aattttcgtaaaaaactgcctacttcatctgtacttctgagcagactacagcttttttta
gtgaaagatccccttttggattatgaagaacagaatttaaccgaagagaacattttcagg
gaatgtttgattttccaaaatgatatgcatatgcaagagagtggaaaggaattacaggag
attaaagagaacttctgtactgcatctttaaaagatgaagagtatttgacattgcctctt
cagttagaattctgccatcccagcaatgacagatcagattctgttaatattccatcatac
ttggagctgaaagagttgttaaatgtagctccagaaactgtggctgatgaagacatgtgg
aaagaattgatcaaagaagatgtcaaagcagaaattacatacaaaatagaaatttctgac
tactgtcccacaccacaagaagtttgctccagtgacagaggaagtacattggaattctgt
gagtcagctaaatacattccatacctgaaagatgaaatggaagtacctttaagtcctcca
tgcagacaacaaagattgtgggttcattttctgtgcccagaacttcaagaagaacctttt
cctctttctgataacagtattttgattacagagccctctagggaatactcagaatctttg
gtatggcagtcagagaagtatcgggataatatgagctctctgttgcttattgagcatcag
accgataaactggcttatgagcatcattcgcttacagaactgaaagaaatgctaccagtt
gaggtagaagcaccaatgctttgctcactaaaggagggctggtggcttcatttgcattta
catccaatctccatagaaactttggaacaattaaatatggatatcagtaatgcaaacagt
ttgctttctacagaagtagaaacattcacaaaatttacaacttaccagttggaaagatgg
cttgaagagaggaattctgtgacaaaccaggagctgctttctgctggaagacatcagtca
gagaaagtaattaatctttgcatgtcactgcagactcaaaggcagtgctttgccccacat
atgactgctgcgtcatctgccaaaattcacagtacaaatacatctgtggaagagctcagt
gagggaaacataaaaaagaataagatggaagaggccatttatttcttaagccaagaaaag
aaaaccctcaaatcccctgaatcagacagctgtaaagatgtgtcttttaagcaagacaac
tcatctagtaatcaaaagcctgcatcatttgcacttgccacaaaatgggagtacgatgat
tctgatctgagcaactttatcatgctgagatctaaatatacactcactcaaagagaggat
aaagatgatgcaaatagtcctggaaaagggctacaatctgacgaacagcctacagatttt
cacaaagaggacagttccgtttgtgaaactgtgagaacagagttaaaagaccaagagagc
gaggacagtgtcacagtcgatattcaagcatcagaaaaccaatgccaggcatactgcctc
ttggaagaagcagccaatcctgttctaaaagatttgacagatctgggtgtacttgcttct
gtaaattggagctttgacagcattaaatttgatcatacaaggtttttcttaaaacagcaa
gagaaaattatatgtgatcgttttaaagaaggtaaagtgaatgagaaggagatcatgctg
ttcagacatgctgcacttgtgcacctgctggtgacagttcgagatcttctattaacatgt
gacttggacacagcactagtttatttgtccaaggcaagggatatctataaaaacatctta
gaatcctgtttgaataacatctggaggcagctgaagatcatacagtacagcagccagaaa
aagcacgaaacaaatcccaaaataacagagcttcagtgtcagatcttaaaatggaagcga
agttacggagaggaacacagtgttaaggttaacaatgtaaacaatttctctgagcaaaca
aaaccacttcaaacagtgaataattataaaacatctttcagcgagggttggcttatggaa
gaaagtcttataattatctttccaattcaccatattgcagacgtacaacagctttgtcat
cttaatgtcagctcatttcttttgcttttcttcttccagatactaatcataacaagaatg
gactctgagagagaaaaagctgctctccttcatactttatctaaagtagaaggtttaaaa
gctacggatttgaattctgaaaaaaaaggatcttgtttaagttgtaaagatatcatacgc
aaccttagtagatactcctgtgttattgtacataatcagcaaattggagctgacttcccc
tggacacacttctcattagtagtggaatatgattattctgagaactcttgctggaaaaat
ctgtgcaaaaatctgagtgttacttacatgacttttaaaaccacccttcctgaaacaata
caaacaagggatcactgtggttcctttcttctggaagtacagattccatatgtatttctg
acaactgaaggtcttcttaatatgccagatattcttcagcttttggaatcaaagtacagc
atttcctttgttgaaagatgcagtagttactccttaaagctctttggaagtacagatcga
tatgttgtgttgacagtggatgaatgtactgctatctttttgcagtgtatggaagaacta
aattatgagcaatcccgtgacaatgtaatattgaagctaatggcattatcgctccaatat
acatgctgttggattgtgttctattccagagaaagactgagtttagagtacagtcttcgg
ggagatactctgcttaaccttgtcttaatttatgccactgtaattgagcttacacaaaag
tcagaagactttgaagtgaaggtagttcttactccagggattgaagagacagcactggta
attcgccagattgctgacaacattttgatagcatctaatatcagtcctcatgagtggttg
gacaaatcctggctttctgtcttgccatctgagacagagaaatgcctgcttgcttttcca
tgtatcaatcctctagttgctcagattatgttaaagaaggaatcttcactgaacaggttg
tttctagcaagttttgatcaactgcaggaacttctcccaaagcttccaaaaaaagtttta
aagcattttagtgacataacctcttcatacaccctaaatgctgctccttcactggaaaca
gcagtgaaaggtgcatcagccccagaaaacagtaataacttctatccagaccataaacaa
aatcatcagtctttacagctacttggtaaagcacaaaacagcgcaggaacatttctcatg
agttctgaagccgtaattcctccactgaatcatcaccaggggttttttgactctgaactt
ccaagctttatggaaaagaaatcatgttcttcagaagtaattacaaggaggaagcagaat
ttctttgctgtgccaaaggactgtgaagagtttgctcatctggatgttactagttccctt
catactcaaagacagcctttcaggatgcactacaactctgatcattcttccaaaaactct
gaaaaaggagatttatttgcaactttcaatgactatgcacctggggagagctctcagcat
attctagaagaattgagagacaaaacattcaagaccccagaaattctgattgaccagacc
ccatggaatgactcttcatccacatgcccacgtgattcatttgcatctgatggttttctc
tcagatttcttcattgacccagatgagcttcaaagtctgaattctcaccaaatagaatct
aaaggaaagagaaaacaaagtccaccattcttatggacagaacaaaagtttagaacagat
tcaggatttgcagaagtgccagagttcaagaaaaagagattggcatatgaaagagtccct
ggaagaagggatggacaaacacggcttaaattcttttga
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