Cuculus canorus (common cuckoo): 104065833
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Entry
104065833 CDS
T08597
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03013
Nucleocytoplasmic transport
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104065833 (UPF1)
03015 mRNA surveillance pathway
104065833 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104065833 (UPF1)
Enzymes [BR:
cuca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104065833 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104065833 (UPF1)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104065833 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104065833 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
NPHP3_N
SLFN-g3_helicase
nSTAND3
PhoH
UvrD-helicase
ATPase
AAA_16
UvrD_C_2
NAT10_TcmA_helicase
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
104065833
NCBI-ProteinID:
XP_053906061
LinkDB
All DBs
Position
27:5875298..5899941
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AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPGQGQG
PPGAGQGPPGPIEAQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGSCLIFSRPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAP
KGKTGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacacggaggag
gccgagctgctcggagccgacactcaaggctccgaattcgaattcaccgacttcaccctc
cccagccagacccaaaccccgcccgggcccgggcaggcggggccgggacagggacagggt
ccccctggagcggggcaggggccgccgggacccatcgaagcgcaggttaatggacctgac
ggcattctgcagaatggagctgtggatgataatgtggctaaaacaagccagcttctggca
gagctgaattttgaagaagatgaagaagatacctattacacaaaggatcttcctgtgcat
gcttgcagttactgtggtatccatgaccctgcttgtgtggtttactgcaacaccagcaaa
aagtggttctgcaatgggcgtgggaatacatctggcagccacattgttaatcatcttgtg
agagcgaagtgcaaagaggtgactctccataaagatggacctctaggagagactgtcttg
gaatgctacaactgcggatgtcgtaatgtgtttctccttggctttattccagccaaggca
gactctgtggttgttctgctgtgcaggcagccatgtgcgagtcagagcagtttaaaggat
attaactgggacagttcacagtggcagcctcttatccaggatcgctgtttcctctcatgg
ctggtaaagattccgtctgagcaggagcagttgcgagcccgtcagattacagctcagcag
attaacaaactggaagaactttggaaggaaaatccatctgcaacccttgaggatttagaa
aagcctggcgttgacgaagaaccgcagcacgtcctgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagactatgacaagaaactcaag
gagtctcagacccaagataacatcactgtcagatgggatctgggcttgaacaagaaaaga
attgcttatttcactttgccaaagactgattcagatatgcgtctgatgcaaggagatgag
atctgcttgaggtataagggagacctggcccctttgtggaaaggaattggtcatgttatc
aaagttcctgatagttctacagattatggtgatgagatagccattgagctgaggagcagc
gttggagcgccggtggaagttactcataacttccaagtggatttcgtatggaagtctact
tcgtttgacaggatgcagagtgctttaaaaacatttgctgtggatgagacctcagtgtct
gggtacatctatcacaaactgctaggtcatgaggtagaagatgtaatcattaaatgccag
ttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtttatgct
gtgaagactgtcctgcagcgccctctgagccttattcagggtccccctggcaccggaaaa
acagtgacgtcggccacaattgtctatcatctggccagacagggcaatggttcttgctta
attttttcaaggcctgtgttagtctgtgctccgagtaacatcgctgtagatcagctgact
gagaagatccatcaaactggactgaaagtggtgcgtctctgcgctaaaagtcgcgaagcg
attgactcccctgtgtccttcttggcattgcataaccagatccgaaacatggatagcatg
ccagagcttcagaaactgcagcagcttaaagatgaaactggagaactgtcatctgcagat
gagaaacgttaccgtgcactgaaacgaacagcagagcgtgaattactgatgaatgcggat
gtgatttgttgcacctgtgtgggagctggtgatccgagacttgcaaaaatgcagttccgc
tccattctgattgacgagagcacacaggccactgagccggagtgcatggtgccggtcgtc
ctcggagcaaaacagcttattcttgtgggtgaccactgccagctgggccctgttgtgatg
tgtaaaaaagctgcaaaggccggcctgtctcagtctctctttgagaggcttgtggtgctg
gggattcgccccatccgcctgcaagtgcagtaccgcatgcatcccgcgctcagtgctttt
ccatccaatattttctacgagggctcactccagaatggtgttactgcagcggaccgtgtg
aagaaaggttttgatttccagtggccacagccagataagccgatgtttttctatgttaca
caaggtcaggaagaaattgccagctcaggcacctcttatttaaacaggacggaagctgcc
aatgtggaaaagataactacgaaactgctgaaagccggtgccaaaccagatcagattggc
atcattaccccttacgaaggtcaacggtcctatctggtgcagtacatgcaattcagtggt
tccttgcatacaaagctctaccaggaagtggaaattgcaagtgtggatgccttccaggga
cgagagaaggactttattatcctttcttgtgtgagggccaatgaacaccagggaataggg
tttctgaatgaccccaggcgtcttaatgtagctcttacaagagcaaggtacggagtaatt
attgttgggaacccaaaagcactgtctaaacaacccctttggaatcacctgctgaattac
tacaaggagcagaaggtgctggtggagggaccactgaataacctgcgggaaagccttatg
cagttcagcaagccccggaaactcgtcaataccatcaaccctggtgcccgtttcatgact
actgccatgtatgatgcacgtgaggctattattccaggatctgtctatgaccggagcagt
caagggcgcccatccaacatgtacttccagacccacgatcagatcgggatgatcagtgct
ggccccagccacgtcactgctatgaacattcctatccctttcaaccttgtgatgccaccg
atgccgccgccgggatactttggccaggctaacggaccagccgcaggacgtggggcgcca
aaaggaaaaactggtcgtggtgggcgccagaaaaatcgttttgggattcctggaactagt
cagtcaaaccttcccaatagtcaagcgagccaagacgtggtgtcccagcctttctcccag
ggtccactgacccaggggtatatctccatgagtcagccatcgcagatgagtcagcctggg
ctctcccaaccggagttatcacaggacagttaccttggtgatgagtttaaatcccagatt
gacgtggcgctgtcacaggactctacttaccagggtgaacgtgcttatcaacatggcgga
gtgacgggactgtcacagtattag
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integrated database retrieval system
