Cuculus canorus (common cuckoo): 104065862
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Entry
104065862 CDS
T08597
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
104065862 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cuca01009
]
104065862 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cuca04515
]
104065862 (PCDH1)
Protein phosphatases and associated proteins [BR:
cuca01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
104065862 (PCDH1)
Cell adhesion molecules [BR:
cuca04515
]
Cadherins
Protocadherins
104065862 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
K319L-like_PKD
Cadherin_4
TMEM154
Mid2
MLANA
Syndecan
Motif
Other DBs
NCBI-GeneID:
104065862
NCBI-ProteinID:
XP_053935268
LinkDB
All DBs
Position
14:1998737..2064641
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AA seq
1225 aa
AA seq
DB search
MRTPLDERSRGQHGAQHRLHPTPQQRRMKQLASCLGLWLLIQLPALVSGTRVVYKVPEEQ
PPNTLIGSLASDYGFPDVGHLYKLEVGAPYLRVDGKTGDIYTTETSIDRESLRECQHLLP
GEPCFLEFEVSITDLILNSSPRLLEGQIEVLDINDNTPNFASPVLTLSIPENTNIGTLFP
IPLAMDRDSGPNGVASYELMAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDREQWDSYDL
TIKVQDGGNPPRASSALLRITILDMNDNAPKFEKALYEAELSENSPMGHSVLQVKANDSD
QGANAEIDYSFHQASDMVRRLLRLDRATGLITVQGPIDREDVNTLKFSVMAKDKGANPKS
ARTQVVVTIKDMNDNAPSIEIRGIGLVTHQDGMANISEDVPVETAVALVQVSDRDEGENA
VVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYESVKEYTIEIVAVDSGNPPLSS
TNSLKVQVVDVNDNAPVFSQSFTEVAFPENNEPDDLVMEVSATDADSGSNAKLVYSLVTD
PSSKGSFTIDPDSGEIRVKAVLDREQRERYEFLVVAADKGSPSLKGTASVAINVMDRNDN
DPKFMLSGYNFSVMENMPPLSPVGMVTVIDADKGENARIQLSVEQDNGDFVIQNGTGTIL
SSISFDREQQSTYTFRLKAVDGGDPPRSAYVGVTINVLDENDNAPFITSPSNATYKHILP
HTSPGQQVSKVKAEDIDSGVNAELIYSITGGNPFELFQISPHSGDITLEKEILRKHHGLH
RLVVRVNDKGKPSRHGTALVHFYVNETLANRTLLDTLVGHSLDTPLDIDIAGDPEYERSK
QRSNILFGVIAGIVAVTLVIVLVVLVRYCRQREAKSGYQAGKKETKDLYAPKQASKSGKS
KSKVKKSKSPKPPKPTEDEEETGLQKSLKFNLMNDSVSDSPRIHLPLNYPPGSPDLGRHY
RSNSPLPSIQLQPQSPSASKKHQVVQDLPATNTFVGTGDNNSTGSEQYSDYSYRTNPQKY
TNKQLPHRRVTFSAASQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHY
ERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECTEFGHSDTCWMPGQSSPSRRPKNAL
KLSTFVPYQDRGSQEQVGNGSPRLSEERSTKMANLRLLPTYSAFSNSSHEPCKDSPMEEI
PLTQTSDFQPATTPSSQTTKREIYL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgcggacgccgctggatgagcgctcaaggggccagcacggagcgcagcaccggctgcat
ccaactccccagcagcgcaggatgaagcagctggcatcctgcctgggcctgtggcttctc
atccagctccctgccctggtctctgggacacgtgtggtctacaaagtgccagaggaacaa
ccccccaacaccctcatagggagcctggcctccgactacggcttcccagatgtggggcac
ctctacaagctggaagtgggggctccgtacctacgtgtggatggcaagactggggacatc
tacaccacagagacctccattgaccgggagagcttgcgtgaatgccagcacctcctgccc
ggagagccctgcttcctggagttcgaagtatccatcactgacctgatcttaaacagcagc
ccacggctgcttgaggggcagatagaggtgctcgatatcaatgacaacacccccaatttt
gcctcacccgtcctcaccctctccatccccgaaaacaccaacatagggacgctcttcccc
atccccctggccatggaccgggactctggccccaacggtgttgcctcctacgagctgatg
gcaggtccggaggcgcaggagctctttgggctgcaggtggcggaggatcaggaggagaag
cagccacagctgattgtcatggggaacctggaccgggagcagtgggactcctacgatctg
accatcaaggtgcaggatggaggcaacccaccacgggccagcagcgccctacttcgcatc
accatcctggacatgaatgacaacgcgcccaagttcgagaaggccctgtatgaggcagag
ctctctgaaaacagccccatggggcattctgtcctccaggtgaaagccaacgactcagac
cagggcgccaacgctgaaattgactactcgttccaccaagcctcagacatggtgcgtcgg
ctgctgcgcctggaccgcgccacggggctcatcacagtgcaggggcccattgaccgcgag
gatgtcaacacccttaagttctccgtcatggccaaggacaagggtgccaaccccaagagc
gcccgcacccaggtggttgtcaccatcaaggacatgaatgacaatgcgccctccatagaa
atacgaggcatcgggcttgtcacccaccaggatggcatggcaaacatctcggaggacgtg
ccagtagagacagcagtggctctggtacaagtgtccgaccgagatgagggtgaaaatgcc
gtggtgacctgtgtggtggctggtgacgtcccattccagctgcggcaggctagtgaaaca
gggagtgacagcaagaagaaatatttcctccagaccaccacgccactggactacgagtca
gtgaaggagtatactattgagattgtggcggtggactcagggaacccgcctctctccagc
accaactctttgaaggtgcaagtggtggacgtgaatgacaatgctcctgtcttcagccag
agcttcaccgaggtggccttccctgaaaacaacgaaccagatgacctggtgatggaggta
agcgccactgatgctgacagcggctccaacgccaagctggtttactctctggtgacagac
ccctcctccaagggctccttcaccattgaccctgactctggggagatccgggtgaaagca
gtgctggaccgagagcagcgggagcgctatgagttcttggtggtggcggcagacaagggc
agccccagcctcaagggtacagcgtctgtggccatcaacgtcatggacaggaatgacaac
gaccccaagttcatgctgagcggctacaacttctcagtgatggagaacatgccgcccctc
agccctgtgggcatggtgacggtgattgatgctgacaaaggagaaaatgcccgcatccag
ctgtcggtggagcaagacaacggggattttgtcatccagaatggcactggcaccatcctc
tccagcatctcttttgaccgagagcagcagagcacctacactttccgactcaaggcagtg
gacggtggtgatcctcccaggtctgcttatgtaggggtgaccatcaatgtcttggatgag
aatgataatgcccccttcatcacttcaccctccaatgccacctacaaacacatcctgcca
cacaccagccctggccagcaggtcagcaaggtcaaggcggaggacattgactctggtgtc
aatgcagagctgatctacagcatcacaggaggcaacccctttgaactcttccagatctcc
cctcacagtggagacatcaccctggagaaagagatcctacgcaagcaccacggcctgcac
cgcttggtagtgcgtgtcaatgacaagggcaagccctcgcggcacggtacagcactggtg
cacttctacgtcaatgagactttggccaaccgcactctgctggacacgttggtggggcac
agcctggacacaccccttgacatagacattgctggagaccccgaatatgagcgcagcaag
cagcgaagcaatatcctttttggagtcatcgctggcattgtggctgtcaccctggtcatt
gtgttggtcgtcctggtacgttactgcaggcaacgggaggccaagagcggctaccaggca
ggcaagaaggagaccaaggacctgtacgcacccaagcaggccagcaagagtggtaagagc
aagagcaaggtgaagaagagcaagtctccaaaaccacccaagcccacggaggatgaggag
gagacggggctgcagaaatcactcaagttcaacctcatgaatgactctgtcagcgacagc
ccccgaatccacctgcccctcaactacccgccaggcagcccggatctgggtcgccactac
cgctccaactcgccgctgccctccatccagctgcagcctcagtcgccctctgcgtccaag
aagcaccaagtggtgcaggacctgccggccaccaacacctttgttggcaccggggacaac
aactcgacgggctccgagcagtactcggactacagctaccgcaccaacccccagaaatac
accaacaagcagttacctcatcgccgagtgacgttctctgcagccagccaggctcaggat
ctgcaggatccctcccagcacagctactatgacagcgggttggaggaatcggagacccca
agcagcaaatcatcctcggggccccgcattggaccgctggccctgcctgaggatcactac
gaacgcaccacacccgacggcagcatcggggagatggagcaccctgagaatgacctccgg
cctctgcccgatgtagccatgactgggacctgtacccgggagtgcacagagttcggccac
tctgatacctgctggatgcccggccagtcgtcccccagccgcaggcccaagaacgccctc
aaactctccacttttgtgccttaccaagacagagggagtcaagagcaagtcgggaatggc
agccccagactctcagaagagcgcagcaccaaaatggccaacctccgcctgctccccacg
tacagtgccttctccaatagtagccatgagccctgcaaggactctcccatggaggaaatt
cctctcacccagacctcggacttccaaccagccaccaccccatcatcccagacgaccaag
agggagatctacctgtga
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