Cuculus canorus (common cuckoo): 104066373
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Entry
104066373 CDS
T08597
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04136
Autophagy - other
cuca04140
Autophagy - animal
cuca04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104066373 (ATG16L1)
04136 Autophagy - other
104066373 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
104066373 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104066373 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
cuca03029
]
104066373 (ATG16L1)
Membrane trafficking [BR:
cuca04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
104066373 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
104066373 (ATG16L1)
Mitochondrial biogenesis [BR:
cuca03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
104066373 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_IFT140_1st
WD40_RFWD3
eIF2A
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Ge1_WD40
INO80F
Fez1
WD40_like
Lipoprotein_6
HTH_6
PALB2_WD40
CCDC93_CC
HEF_HK
PUMA_CC
V_ATPase_I
Motif
Other DBs
NCBI-GeneID:
104066373
NCBI-ProteinID:
XP_053930649
LinkDB
All DBs
Position
9:complement(2854121..2877437)
Genome browser
AA seq
696 aa
AA seq
DB search
MMAVVRPLSSQRRFPPSLLLRRRGRALIAWRAPVRVRRVPRRRAGRGRRRRGGARAVAAA
AEAPALPLPPPAMAAGPRAVAAPPWKRHLAAELRRRDRVQRQPFEEMIAQYNKLLEKSDL
HAVLADKLQAEKYDMQSRHEISPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQ
SVIDLNNQMQQKDKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDA
LQITFNALEEKLRKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAA
KEPLPVEPRDDDIEVLADETSDTADETSPVRAVSRTASKRLSQPAGGLLDSISNIFGLSE
SPLLGHQSSDAARRRSLSSFPAPQDNVEPHPGATKEVRVPTTAICVFDAHDGEVNAVQFS
PGSRLLATGGMDRRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASR
IWTVDDNRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSS
CNDIVCTEQCVMSGHFDKKIRFWDIRTESIVKELELLGRITALDLNSERTELLTCSRDDL
LKIIDLRVSAVKQTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYIWNVLTGKLERT
LAKHHSSSINAVAWSPAGAHVVSVDKGNKAVLWSEF
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggtggtgaggcccctctcctcacagaggcgcttcccgccgtccctcctgttg
aggcgccgcggccgcgccctcatcgcctggcgggcgccggtccgagtgcggcgtgtcccg
cggcggcgcgcagggcggggccggcggcggcggggcggggcgagggcggtggcggcggct
gcggaggcgcccgcgctgccccttccccccccggcgatggcggcggggccgcgggccgtc
gcggcgcccccgtggaagcggcacctggcggcggagctgcggcggcgggaccgggtgcag
cggcagcccttcgaggagatgatcgcgcagtataacaagctactagagaagtcagacctc
catgcggtgctggctgataagcttcaagcagaaaaatatgacatgcagagcagacatgag
atcagtccaggacacgatggtacgtggaatgatgctcagttgcaggaactggcacagctg
aagataaagcatcaagaagagctgacagaactgcataagaaacgtggcgagctggcccag
tctgtaattgatctgaataaccaaatgcagcaaaaggacaaagagatgcagatgaacgaa
gcaaagattgctgaatatttgcaaaagatctccgaactggaaacagagtgccaagaattg
cgtagcaagctacaagatcttgagcgagctaatcagacgctgaaagatgaatatgatgct
ctccagatcaccttcaatgccttggaggagaaactaaggaaaactactgaagacaaccag
gagctggtctcgcgttggatggcagagaaagcacaagaagccaatcgtttgaatgcagaa
aatgaaaaggattcaaggaggcgacaagccaggctgcagaaggagctagcagaagctgcc
aaagaacccctgcctgttgaacccagggatgatgatattgaagtgcttgcggatgaaacc
tctgacacagccgacgagacgtccccagtgcgagctgtcagccggacagccagtaagcga
ctctcccagccagctggaggccttctggactctatcagtaatatctttggtctgtctgag
tctccccttttgggacatcaatcttctgatgctgccaggaggcgttctctgtcctcgttc
cctgctccccaggataatgtagagccacatccaggtgccactaaagaagtgagagtgccc
actactgccatatgtgtctttgacgcacatgacggggaggtgaatgcagtgcagttcagc
cccggctcccggctactcgcaacaggaggcatggaccggagggttaagctttgggaagtc
ttaggagatcggtgtgagcccaaggggtccctctctggtagtaatgctgggattacaagc
atagaattcgatagcgctggttcttacctcctagcagcttcaaatgactttgccagcaga
atttggacggtcgatgacaatcggttacggcacaccttgacaggtcacagcggtaaagtt
ctgtcagccaagttcttgctggacaatgcacgcattgtttcgggaagtcatgaccggacc
ctcaagctctgggacctccgcagcaaagtttgtataaaaacagtgtttgcaggatctagc
tgcaatgacatcgtatgtactgagcagtgtgtgatgagtggacattttgataagaaaatt
cgtttctgggacatcaggactgaaagcatagtaaaagaactggagctgcttggaagaatc
acagccctggacctgaactcagagcgaacagagcttttgacttgttcccgtgatgatctg
ctaaagatcattgatctgcgggttagtgctgtcaagcagacattcagtgcccagggattc
aaatgtggctctgactggacgagagttgtgttcagccctgatggtaactatgtggctgct
gggtcagctgatggggccctttacatttggaatgtgctcactgggaaattggagaggacg
cttgcaaagcatcacagttcttctatcaatgcagtcgcatggtcgccagcgggtgcccac
gtggtcagtgtggacaaaggaaataaggctgtcctgtggtctgagttttga
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integrated database retrieval system
