Cuculus canorus (common cuckoo): 104066394
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Entry
104066394 CDS
T08597
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104066394 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104066394 (VPS8)
Membrane trafficking [BR:
cuca04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104066394 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
Clathrin
zf-RING_2
zf-RING_UBOX
WDR55
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
104066394
NCBI-ProteinID:
XP_053931023
LinkDB
All DBs
Position
9:3574307..3662879
Genome browser
AA seq
1384 aa
AA seq
DB search
MEPEPCPEPPGPRLSAAELDRDLDSRNDLIDDKEFDIPQVDTPPTLESILNETDDEEESF
VLEDPFLLNVDNTDAHSYDTSSVASSDSGDRTHLKRKKKLPDSLSLHGSVIRLSLLKGIS
AQIVSAADKVDAGLPTAIAASNLIAVGTSHGLALIFDQNQALRLCLGSTAVGAQYGAISA
LSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDAHPPGTAILHIKFTDDPTLAICNDS
GGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPLHAKVELRDHPITQYSLLAMASLT
KILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVAVQNAVNPMLAFCRGDVVHFLLVKR
DDTGAIHVTKQRQLHLHYDLINFTWINSRTAVLLDSVEKLHVIDRQTQEELETVEISEVQ
LVYNSSHFKSLATGGNVSEALALVGEKACYQSISSCGGQIFYLGTKSVHVMTLRSWRERV
DHLLKQERLTDALALAWSFYEGKAKAVVGLSGDASKRKAVIADRMVEILLHYADRALKKC
PDQGKIQVMEQHFQDVVPVIADYCLLLQRTDLLFNQIYDKMSENSVAKGIFLECLEPYIL
SDKLMGITAQVMKDLLLHFQDKNRLENLEACIVHMDITSLDIQQVVLLCWENRLYDAMIY
VYNSGMNDFISPMEKLFKVIAAPLNAGKSLTDDQVVMGNKLLVYISCCLAGRAYPLGDIP
EDLVPLVKNQIFEFLIRLHSTEGSVDEEVYPYVRTLLHFDTREFLNVLALTFEDFKNDKQ
AVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPNNTLFVNRTLFDQVLEFLC
SPDDDSRHSERQQVLLELLQAGGIVQFEESRLIQMAEKAEFYQICEFMYERQLRYDKIIG
CYLRDPVRKEEVFNYIHNILSMPGYSAEEKQSVWQKALEHVEELLLLSPCKAAELVATHF
SEEIESIITNLQDQFLLFQFLKSLLDPREGISQDLLHLPPCITEQFIELLCQYSPDQVLE
TLKVLEYCRLEETIQITQKHQLHEASSYLLEKKGDIHGAFLVMLERLQSKLLMLMQDDES
SAELSLLENVEDTLMKTIALCQRNSYSLDQQQREALWFPLLEAMMSPQKLSGSSQCRYSE
SLKSLTMQVLNNMAAFIALPSILQRILQDPVYGKGKLGEIQGLVLGMLDTFNYEQTLLET
TTNLLNHDLHWSLCNLRASVTRGLTPKQDYCCICLQQYKRRQETADEIIVFSCGHLYHSL
CLLSKECGMVTKGLMRWMCYKCNSSNKGGKLSENFSELKKGSGASLAQMNTESLLDPQQI
QAFDQLCRLNRGTSRLALLTELSRGHSSEKHGLLSISHGDPGTSSVFQNENFQLHLAPPP
LADD
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggagcccgagccgtgcccggagccgcccggccctcgcctgagcgcggcggagctcgac
cgcgacctggactcccgcaacgacctgatcgatgacaaagaatttgacattcctcaagtg
gatactcctcccaccctggagagcatcctcaatgagactgatgatgaagaggagtctttt
gttttggaggatccctttctcctgaacgttgataacacggatgcgcactcctatgacaca
tcttctgtagcgagctccgacagtggggaccggacacacctgaaaaggaagaaaaaactg
ccagattctctctcactccatggatcagtgatacggctctcgcttctgaaaggaatttct
gcccaaatagtctctgcagcagacaaagtggatgctggcctgcccaccgcaattgcagca
tcaaatctgatagcggtggggacttcccatgggttagcactgatatttgatcaaaaccag
gctcttcggctgtgtctgggcagcactgcagttggggcacagtatggagccatctctgct
ctcagtatcaacaatgactgttcgaggctcctgtgcggctttgccaaaggacagatcaca
atgtgggatctggccagtgggaagctgctgcgatcaataacggatgcccatccacctgga
acagccattttgcacatcaagtttacagatgacccgacgcttgccatttgcaatgacagc
ggaggctccgtatttgaattgtcgttcaagagggttatgggagtgagaacgtgtgagtct
cgatgtctcttcagtggctccaagggggaggtttgttgtattgaaccgttacatgcaaaa
gttgagctgagggaccatcctatcacccagtattcactgctggccatggcctccctaaca
aagatattggttattgggctgaagccgtctctgaaagtgtggatgacctttccctatggc
cgtatggacccttctagtgtccctcttctggcatggcactttgtggctgtacagaacgct
gtgaaccccatgcttgcattttgtcgaggagacgtcgttcattttcttctggtgaagaga
gatgatactggtgcaatacatgtcactaagcagaggcagcttcatcttcactatgatctc
atcaactttacttggataaactcccggacagcagtgcttctggacagcgtggagaagctg
catgtaatagaccgtcagacgcaggaggagctggagactgtagagatctcagaagttcag
ctcgtctacaacagcagccacttcaagtccctggcgacaggaggcaacgtcagcgaagcg
ctggcactggttggagagaaagcttgttatcagtccatcagcagctgtggtggccagatc
ttttaccttggaactaagtctgttcacgttatgacattgagaagctggagagagagagtc
gatcaccttctgaaacaagagcgtctcacggatgccctggctctagcttggtcattttat
gaaggtaaagcaaaggctgtagtaggcttgtctggggatgcaagcaagaggaaagcagtc
attgcagacagaatggttgaaatccttctgcattatgctgatcgggctttgaagaaatgt
cctgaccaagggaaaatccaggttatggagcagcattttcaggacgtggtgcctgtcatc
gctgattactgtcttttactccagcgcacggatcttttatttaaccagatatatgataag
atgagtgagaattctgtagctaaaggcatctttctagagtgcttggagccatacatctta
agtgataagctaatgggaatcacagctcaagtgatgaaagacttgctgcttcacttccaa
gacaagaacaggctggaaaatttggaagcctgcattgtgcatatggatatcaccagctta
gacatacagcaggtagttcttctatgctgggaaaaccgtctctatgatgccatgatctat
gtttacaacagtgggatgaatgacttcattagtcccatggagaagctgttcaaagtcatc
gctgctccgctgaatgctgggaagtcactcacagatgatcaggtggtgatgggcaacaag
ctgcttgtatatataagctgctgcttggcaggccgtgcgtatccgttgggtgatattcct
gaagatctggtacctttggttaaaaatcagatcttcgaatttctcatccggctccattca
actgagggatctgtggatgaagaggtctacccttatgtccgtaccttactgcacttcgac
actcgggaatttcttaatgttcttgcactgactttcgaagactttaagaacgacaaacaa
gctgtggagtatcaacagcgaattgtggacatacttctgaaggtgatggtcgagaattct
gatttcaccccatcgcaggtcggctgtctcttcaccttccttgcccgtcagctcgccaag
cccaacaacacattgtttgtgaacaggacgcttttcgaccaggtccttgagtttctgtgc
agtccggatgatgattcccgccactcggagaggcagcaggtccttttagaactgctccag
gcaggagggatagtgcagtttgaagagagccgtcttatccaaatggcagaaaaagcagaa
ttctatcaaatttgtgagttcatgtatgaacgacagcttcgctatgacaagataattggc
tgttacctgcgtgatccagtgagaaaggaagaagttttcaactacattcacaacatactg
tccatgcctggctacagcgctgaagaaaagcagtcggtgtggcagaaagctttggaacac
gtcgaggagctgctgttgctgagcccatgtaaagcagccgagttggtagccactcacttc
agtgaggagattgagagcatcatcacaaaccttcaggaccagttcttactcttccagttt
ctgaagagcctacttgatccaagagaaggcattagccaagacctgctacacttaccgccc
tgcatcactgagcaattcatcgagctgctctgtcagtacagcccagaccaggttttggag
acactgaaagttctggaatactgcagactggaagaaaccatccagataacccagaaacat
cagctccatgaagcttcttcctatttactggagaagaagggagatatccacggtgccttt
ctggttatgcttgagcgattgcagagcaagctcctgatgcttatgcaagatgatgaaagc
tcagctgaactctccttactagaaaacgttgaagataccttaatgaaaacaattgccctt
tgccagagaaattcatacagtttagaccagcaacagcgagaggccctgtggtttcccctg
ctggaggctatgatgtccccccagaaattatctggttcttctcagtgtcggtactctgag
tctttgaagagtttgacaatgcaagtgctgaacaacatggctgcgtttatcgctcttcct
tcaatcctgcagcgaattctacaggatccagtttatggaaaagggaaactcggagaaatt
caaggacttgtcctgggaatgctggacacttttaactatgaacaaacccttttagagaca
acaacgaaccttttaaaccatgatctgcactggtccctgtgtaacctaagagcttctgtc
actagagggcttacccccaagcaggattactgctgcatttgtctacagcagtacaaaaga
aggcaagaaactgctgatgaaatcattgttttcagttgtggccacttgtaccattcgctg
tgtctgctgagtaaagagtgtgggatggtcaccaaaggcctcatgaggtggatgtgctat
aaatgcaactcgagtaacaagggaggaaaactgagcgagaacttctcagagctgaaaaaa
ggaagtggagcatccttggcacagatgaatacagagtctctgttggatcctcagcaaatc
caggcttttgaccaactctgccgactcaaccgaggaacctccagactagctctcctgaca
gaactgtctcgcggccacagcagtgaaaagcacggactgctcagcatttcccacggtgac
ccaggcaccagcagtgtcttccagaacgagaacttccagctccacctggccccccctccg
ctggctgatgactag
DBGET
integrated database retrieval system
