Cuculus canorus (common cuckoo): 104066766
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Entry
104066766 CDS
T08597
Symbol
TNC
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04510
Focal adhesion
cuca04512
ECM-receptor interaction
cuca04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104066766 (TNC)
04518 Integrin signaling
104066766 (TNC)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104066766 (TNC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cuca00536
]
104066766 (TNC)
Glycosaminoglycan binding proteins [BR:
cuca00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104066766 (TNC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_2
EGF_Tenascin
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
FN3_DSCAM-DSCAML_C
DUF7949
EGF
Pur_ac_phosph_N
Fn3_VIN3
Interfer-bind
NDNF
hEGF
DUF4998
Big_5
Motif
Other DBs
NCBI-GeneID:
104066766
NCBI-ProteinID:
XP_009567715
LinkDB
All DBs
Position
19:9388986..9463755
Genome browser
AA seq
1807 aa
AA seq
DB search
MGLPTQILTCAILALLYQHVSGGLIKRIIRQKRETGLNVTLPEDNQPVVFNHVYNIKLPV
GSLCSVDLDTASGDADLKAEIEPVKNYEEHTVNEGNQIVFTHRINIPRRACGCAAAPDIK
DLLSRLEELEGLVSSLREQCASGPGCCPNSQAVEGRLDTTPYCNGHGNYSIEICGCICEP
GWKGPNCSEPVCPQNCFNHGLCVQGKCICNEGFTGEDCSQATCPSDCNDQGKCVDGVCVC
FEGYTGPECSEELCSQGCSVHGRCVNGHCVCHEGFTGEDCSEPLCPNNCHNRGRCVDNEC
VCDEGYTGEDCSEIICPNDCFDRGRCVNGTCFCEEGFTGEDCGELTCPNNCNGNGRCENG
LCVCYEGFLGDDCSQKRCPKDCHNRGRCVDGHCICHEGYLGEDCGELRCPNDCHNRGRCM
NGQCVCHEGFVGEDCGELRCPNDCNNRGRCVNGQCVCHEGFVGDDCGELRCPNDCNGRGL
CVNGQCVCDEGYTGEDCGELRCPEDCHNRGRCVEGRCECDNGFTGVDCSELSCPNDCHQH
GRCIDGRCVCHEGFMGEDCRERSCPNDCSNAGRCIDGQCVCEDGYMGDDCSDVSPPTQLT
VTNVTDKTVNLEWKHENVVNEYLITYVPTSSGGLDMQFTVPGNQTAATIHELEPGVEYFI
RVFAILKNKKSIPVSARVATYLPAPEGLKFKSVRETSVQVEWDPLNFSFDGWELVFRNMK
KDDNGDITSSLKRPETSYMQPGLAPGQQYNVSLHIVKNNTRGPGLSRVITTKLDAPGQIE
AKDVTDTTALITWSKPLAEIEGIELTYGPKDIPGDRTTIDLSEDENQYSIGNLRPHTEYE
VTLISRRGDMESDPMKEVFVTDLDAPRNLKRVSQTDNSITLEWKNSHANIDNYRIKFAPI
SGGDHAEITVPKGNQATTRTTLTGLRPGTEYGIGVTAVRQDRESAPATINAGTDLDNPKD
LEVSDPTETTLSLRWRRPVAKFDRYRLIYVHPSGEKNEMEIPVDSTSFILRGLEAGAEYT
ISLVAEKGRHKSKPTTVKGLTEEEPELGNLSVSETGWDGFQLTWTAADGAYENFIIQVQE
LDNPEESRNITVPGGLRFMNVTGLKANSPYTITLHGVTQGYRTKPLSVETVTGVHPEVGE
LTVSDITPESFNLSWTTTNGDFDVFTIEIIDSNRLLEPMEFNISGNSRTAHISGLSPSTD
FIVYLYGISHGFRTQAISAAAKTEAEPEVDNLLVSDATPDGFRLSWTADDGVFDSFVLKI
RDTKRKSDPLELIVPGHERTQDITGLKEGTEYEIELYGISSGRRSQPVNAVATTVVGSPK
GISFSDITENSATVSWTPPRTRVDNYRISYVPVTGGTPNIVTVDGSKTRTKLMKLVPGVD
YSVSIISVKGFEESEPISGTLKTALDSPSGLVVVNITDSEALATWQPAIAAVDNYVVSYA
SEDEPEVTQTVSGNTVEYDLKGLRPATEYTLSVHALKDTQKSETLSTQFTTGLDAPRDLS
ATEVQSETAVITWRAPRAPVTGYLLIYESIDGSVKEVILNPETTTYNLGELSPSTQYTVK
LQALSRSLKSKTIQTILTTTGLLYPYPKDCSQALLNGETTSGLYTVYLNGDKAQPLQVFC
DMSEDGGGWIVFLRRQNGKEDFYNNWKTYVAGFGDPQDEFWIGLENLHKITSQGQYELRV
DLQDKGETAYAVYDRFSVGDAKSRYRLRVDGYSGTAGDSMTYHNGRSFSTYDKDNDSAIT
NCALSYKGAFWYKNCHRVNLMGRYGDNSHSQGVNWFHWKGHEYSIQFAEMKLRPSSFRNL
EGRRKRA
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgggactccctacccagattttgacctgtgcaatcttggctttgctgtaccagcatgtc
agtggtggactcatcaagcgaattatccggcagaagcgggagactgggctaaacgtgacc
ttgccagaggataatcaacctgtggtttttaaccacgtctacaacattaagttgcctgtt
ggctccctttgctctgtggacctggatacagcaagcggtgatgcagacctgaaggcagaa
attgagcctgtcaagaattacgaggagcacacggtgaatgaggggaaccagattgtcttc
acgcaccgtatcaacattccccgaagggcttgtggctgtgcagctgccccagacattaag
gatctgctgagcagactagaggagttggaagggctggtatcctccttacgggagcagtgt
gccagcgggcctggatgctgtcctaattcccaggcagtagaaggtcgcctggacacaaca
ccctattgcaatggacatggcaactacagcatcgagatctgcggctgcatttgtgagccc
ggctggaaaggtcccaactgctccgaaccagtctgcccacaaaactgcttcaaccacggc
ctctgcgtccagggcaaatgcatctgcaatgaaggcttcactggtgaggactgcagccag
gccacctgcccgtctgactgtaacgaccaaggcaagtgcgtggatggggtttgtgtgtgc
tttgaggggtatacaggcccagagtgcagcgaagagctctgctcacaggggtgtagtgtg
cacgggaggtgcgtgaacgggcactgtgtgtgccacgagggcttcactggtgaggactgc
agcgagcccctctgccccaacaactgccacaaccgtgggcgctgcgtggacaatgagtgt
gtctgtgacgagggctacaccggcgaggactgcagtgagatcatctgccccaatgactgc
tttgaccgtgggcgctgtgtcaatgggacctgcttctgtgaggagggcttcactggggag
gactgcggggagctgacctgccccaacaactgcaacggcaacgggcgctgcgagaacggg
ctctgcgtctgctacgagggcttcttgggggatgactgcagtcagaagaggtgcccaaag
gactgccacaaccgtggacgctgcgtggatggacactgcatctgccatgagggatacctg
ggtgaggactgtggggagctacggtgtcccaatgactgtcacaaccgcgggcgctgcatg
aacggtcaatgcgtgtgccatgaaggattcgttggggaggactgcggggagttaaggtgc
cccaacgactgcaacaaccgcgggcgctgtgttaacgggcagtgtgtgtgccacgaggga
ttcgttggggacgactgtggtgagctgcggtgccccaacgattgcaacgggcgtgggctc
tgtgtcaatggacagtgtgtgtgtgatgaagggtacacaggcgaggactgtggggagctg
cggtgccccgaagactgccacaaccgtgggcgatgtgtggaggggcgctgtgaatgtgac
aatggcttcacgggagtggactgcagcgagctgtcctgccccaacgactgccatcagcac
gggcgctgcatcgatggacgctgcgtgtgtcacgagggcttcatgggggaggactgccgt
gaacgatcctgccccaatgattgcagcaatgcaggccgttgcatcgatggacagtgtgtc
tgtgaggatggctacatgggagatgactgctccgatgtgtctcctccaactcagctgact
gtgacaaacgtaactgataaaactgtaaatctggaatggaagcatgagaacgtcgtcaat
gagtacctcatcacctatgtccctacaagcagcggtggcttagatatgcaattcactgtg
ccaggaaaccagacagctgccactatccatgaactggagccaggagtagagtactttatc
cgtgtctttgccatccttaaaaacaagaagagtattccagtcagtgccagggtagcaaca
tatctgcctgctccagaaggactgaaattcaaatctgttagagaaacatctgtccaggtg
gaatgggatcccctgaacttttcatttgatggctgggagctggtcttccgtaacatgaaa
aaggatgataacggagatataaccagcagcttgaaaaggccggagacatcgtatatgcaa
ccaggtttggcaccagggcaacagtataatgtatctcttcatatagtgaaaaacaacacc
agaggaccaggactgtcccgagtgataaccacaaagcttgatgcccctggccagatcgag
gcaaaagacgtcacagacaccacagctcttatcacctggtccaaacccttggctgaaatc
gaaggcatagagctcacttatggccctaaggatattccaggggacaggacaaccattgac
ctctctgaagatgaaaaccaatattctattggaaacctgaggcctcacactgagtatgaa
gtgacgctcatctctcgtcgaggggacatggaaagcgaccctatgaaagaagtctttgtc
acagacttggatgctccaagaaacctgaagcgggtgtctcagacagacaatagtattact
ttggagtggaagaacagtcatgcaaatattgataactatcgaattaagtttgctcccatc
tctggcggagaccacgctgagatcacagtgccaaagggcaaccaagcaacaaccagaact
acgctcacaggtttgaggcctggaactgaatatggcattggagtgacagcagtgagacag
gacagggaaagcgctcctgctaccattaacgctggcactgatcttgataaccccaaggac
ttggaagtcagcgaccccaccgaaaccacattatcccttcgctggagaagaccagtggcc
aagtttgaccgttatcgcctcatttatgttcacccctctggagagaagaatgaaatggag
atccccgtggacagcacatctttcatcctgcgagggctggaggcaggggcagaatacacc
attagtctggtggcagagaaaggcagacacaaaagcaaacccaccactgtcaagggtttg
actgaggaggaacctgagcttggaaatctatcagtatcagagactggctgggatggtttc
cagctcacctggacagcagccgacggcgcctatgagaactttatcattcaggtgcaggag
ctggacaatcctgaagaatcccggaatatcacggtcccgggtggactgcgctttatgaat
gttacaggcctcaaggccaacagcccttataccatcacacttcatggtgtgactcaaggc
tacaggaccaaacccctttctgttgaaactgtgacaggagtgcacccagaagttggtgag
ctaaccgtttccgacattactcctgaaagcttcaacctttcctggacaaccaccaatggg
gacttcgacgtctttactattgaaattattgattctaacaggttgctggagcccatggag
ttcaacatctcaggcaattcaagaactgctcatatctcagggctttcccccagcactgat
tttattgtctacctctatgggatctctcatggtttccgcacacaggcaataagtgctgca
gctaaaacagaagcagaacccgaggtcgacaaccttctggtttcagatgctactccagat
ggcttccgtctgtcctggactgcagatgatggggttttcgacagttttgttctaaaaatc
agggataccaaaaggaaatcagatccactggagctcatagtaccaggccatgagcgcacc
caggatataacagggctgaaagagggtactgaatatgaaatcgagctctatggaattagc
agtggacgacgttcccaacctgtaaatgcagtagcaaccacagttgttggatctcccaag
ggaatttctttctctgacatcacggaaaactctgctacagtcagttggacaccccctcgc
acccgcgtggacaactaccggatctcctacgtccctgtcacaggaggtactccaaacatt
gttacggtcgatggaagcaagacaaggaccaagctgatgaagttagtcccaggtgtagac
tacagtgttagcatcatctctgtgaaaggctttgaagaaagtgaacccatctctggcact
ctgaaaacagctctggacagcccatcaggcctagtggtggtgaacatcacagactctgag
gctctggcaacctggcagccagcaattgctgctgtggataattacgtcgtctcctatgcc
tctgaggatgaaccagaagttactcagacagtatcaggaaacactgtggaatatgacctg
aagggccttagacctgcaactgagtatacgctgagtgtccacgcattgaaggacacgcag
aagagcgagaccctctccactcagttcactacaggactggatgctccaagagatttaagt
gccactgaggtacagtcagaaacagctgtaataacttggagggctccacgtgctcctgtc
actggttatctcctgatctacgagtccattgatggcagcgtcaaggaagttatcctaaac
cctgagacaactacctacaacctgggagagctgagcccatctacccagtacacggtgaaa
ctccaggctctgagcagatctctgaagagcaagacgatccagactattttgaccacaact
gggcttctctatccttaccccaaagactgctcccaggctctcctgaatggagaaactacc
tctggactctacacagtttacctgaatggggacaaggctcagcctctgcaagtcttctgc
gacatgagcgaagatgggggcggatggattgtgttcctgaggcgtcaaaacggaaaggaa
gatttctacaataactggaagacttatgtggctggttttggagatcctcaggatgaattc
tggataggtctggagaaccttcacaaaattacctctcagggccagtacgagctgcgtgtg
gatctacaagacaaaggtgagacagcttacgctgtctacgacaggttcagcgtgggagac
gcgaagagcagatatcggctacgagtggatgggtacagtggcacagcaggtgactccatg
acataccataacggaaggtccttttccacctatgacaaggacaacgattctgccatcacc
aactgtgctttgtcatacaagggtgcattctggtacaagaattgtcaccgagtcaatctg
atgggcagatacggcgacaacagccacagtcagggtgttaactggttccactggaagggc
cacgaatactccatccagtttgcagagatgaaactgagaccttccagcttccgaaacttg
gaaggaagacgaaagcgagcgtaa
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integrated database retrieval system
