Cuculus canorus (common cuckoo): 104067165
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Entry
104067165 CDS
T08597
Symbol
FIP1L1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104067165 (FIP1L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cuca03019
]
104067165 (FIP1L1)
Messenger RNA biogenesis [BR:
cuca03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
104067165 (FIP1L1)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
104067165
NCBI-ProteinID:
XP_053921971
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Position
4:29351265..29394731
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AA seq
562 aa
AA seq
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MSTGEVERLSADVGVAAADEEEEEWLYGDENETERPEEEKTSVPPPPGNEEEAAENGVVK
TKVAEAEDDSDSDSDDDEDDVQVTIGDIKTGASQYGYGAAPVNLNIKTGGRAYPSSGAKV
KGVDLEAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIR
MGLEILPVTSTTNKIMAEDNAMEVRPSAEILDGRYHLFKVQQGRTGNLEKELAVQSTKAD
FTSPPALFKSGIPTNRRLSGTIDVIGQTITISRVEGRRRANENSNIQVLSERSNPEVDNF
TKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGGPPPSL
IPTIESGHSSGYDGRSVRAFSYGSVTFPHLAGSAPSWSSLMDSSKQWDYYARREKDRERE
RERSRDRDRDRDRERDRDRDRDRDRDRERTRDRERERDHSPTPSVFNSDEERYRYRDYAE
RSYDRHRTSREKEDRHRDRRHREKEENRHKSSRSNSRRRHDSEEGDSHRRHKHKKSKRSK
EGKEASGEPAPEQENTEAAPVE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccggcgaggtggagcggctgtcggcagacgtcggagtggccgcggcggacgag
gaggaggaggagtggctctatggcgatgaaaatgaaacggagagaccagaggaagaaaaa
actagtgttccacccccacctggaaatgaagaggaggctgcagaaaatggcgttgtgaaa
acgaaggtggcagaggctgaggatgacagtgatagtgatagtgatgatgatgaagatgat
gttcaagtcaccataggggatattaaaacaggagcttcacagtatggctatggagcggca
cctgtgaatctcaatattaagacaggaggacgagcttatccatcttctggtgcaaaagtt
aaaggggtggatctagaggcgccagggagtattaatggtgtgccacttctggaagtagat
ttagattcttttgaagataaaccttggagaaagccaggggctgatctctctgattatttc
aactatgggttcaatgaagatacctggaaagcttactgtgaaaaacaaaagagaatacga
atgggtcttgaaattttaccagttacctcaaccacaaataaaattatggctgaagacaat
gctatggaagtaagaccaagtgcagagattctcgatggcagataccatctttttaaggta
cagcagggcagaactggaaatttggagaaagagttggcagtacagtcgaccaaagctgat
ttcacatctcctcctgccttattcaaatcaggaatcccaacaaacaggcgcttatctggc
acaatagatgtaattggacaaaccatcactatcagcagggtggaaggacgacggcgtgct
aatgaaaacagcaacatacaggttctttcagaacgatctaatcctgaagtagacaatttt
accaagccacctccatttttccctccaggagctccacctacccaccttccaccacctcct
ttcctcccaccccctccaactgtcagtactgctccacctctaatacccccaccaggtata
ccaataacagtgccaccaccaggctttccaccaccacccggcggtcctccaccttccctc
atacccacaatagaaagtgggcattcttctggctatgatggtcgttctgttcgtgcattt
tcatatggcagtgtcacgtttccgcaccttgcaggttcggctccttcatggtctagtctt
atggacagcagcaaacagtgggattactatgcacgaagagagaaggacagggaacgtgag
agagaacgatcccgggatcgggatcgggatcgtgatcgtgaacgggaccgggaccgggac
cgagacagagacagagatcgagaacgcaccagagacagggaaagggaacgagatcacagt
ccaactccaagtgtgttcaacagtgatgaagaacgatacagatacagagactatgcagaa
agaagctatgatcgccacagaacaagtagggagaaagaagaccggcacagagacaggaga
cacagagagaaagaagagaatagacacaagtcatctcgaagtaacagcagacgacgtcac
gacagtgaagaaggggacagccacagaaggcacaaacacaaaaaatccaaaagaagcaaa
gaaggaaaagaagccagcggtgaacctgctcccgaacaggaaaacactgaagctgcccct
gtggaatag
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