Cuculus canorus (common cuckoo): 104067175
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Entry
104067175 CDS
T08597
Symbol
ARHGEF12
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
cuca
Cuculus canorus (common cuckoo)
Pathway
cuca04270
Vascular smooth muscle contraction
cuca04625
C-type lectin receptor signaling pathway
cuca04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
104067175 (ARHGEF12)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
104067175 (ARHGEF12)
09153 Circulatory system
04270 Vascular smooth muscle contraction
104067175 (ARHGEF12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cuca04131
]
104067175 (ARHGEF12)
Membrane trafficking [BR:
cuca04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
104067175 (ARHGEF12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Ribonuc_2-5A
AAA_23
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
104067175
NCBI-ProteinID:
XP_053942842
LinkDB
All DBs
Position
23:7170656..7251926
Genome browser
AA seq
1543 aa
AA seq
DB search
MSGTQSTITDRFPLKKPTRHGSILSRESPADKKQKVERCSSTHDFDPTDSSSKKTKSSSE
ESRSETYGLVQRCVVIQRDENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNG
TLVTHSNHLEVVKLIKSGSYVALTVQGRPPGSPQIPLADSEVDLAAFGHMSPIMTSPHSP
GTSGNAERITSPVLMGEENNIVHNQKVEILRKMLQKEQERLQSLQEEYSRSATTRLLKEI
QETKKHIPQLQEQLSKATGCTQDGVLSSRSVTESLQISEVEAESRDCENKLDYSSDSPSR
PNSDIADSPRSGLKERIYLDESPEKTEIQDADSQSIVGSPLSRVGPQIIGAEDDDFDTEQ
EQINGQCSCFQNIELLKSRPAHLAVLLHHVVSQFDPAALLCYLYTDLYKQTNSKETRRVF
LEFYQFFLDRAANLKVPVPDEISLELDRRRPELLPEELHRQFIQTMQDKVCPEVQRNLED
FRQKRSMGLTLAEGELTKLDAERVRDRNAVEKERACAEQIIAKIEEVLMTSQPLEEDKSS
TMQYVILTYMKHLGVKVKEPRNLEQKRGRIGFLPKIKVQSIKKEKEGEEKGKRRGFPNIL
GPPRRPSRHDSSAIGRAMEMQKPRHPKHSPTASSVSPEPPDSSKMRQSGSSSDGTDAPYQ
PANPMSPLAVGPFSSPEGSKDSETGLKQAGDAPPANDCVDSTPRTPNNTFEFPSPLENLQ
EEEGESERMVDMGTPKPFRKMDSVGFADVQSEDELYDFDVDVDPPNWQQLVSREVLMGLK
PYEIKRQEVINELFYTERAHVRTLKVLHNVFYQRVTREGILNSSDKRKIFSNLEDILGLH
VALNDQMKTVRKRNETSVIGQIGEDLLSWFSGPAEEKLKHATATFCSNQPFALEVIKSRQ
KKDSRFQTFVQDAESNPLCRRLQLKDIIPKEMQRLTKYPLLLDNIAKYTELPEEKEKVKK
AADHCRQILNHVNQAVKESENKQHLEDYQRRLDLSYLKQSEDPMMDEFRNLDLTKRKMLH
EGPLIWKVNRDKTIDLYTLLLEDILVLLQKQDDKLVLKCHSKILASTADSKHTFSPIIKL
NTVLVRQVATDNKAFFVISMSENGAHIYELVAQTVSEKNVWQDLIAQMAGTVKMGSARRV
IPLPQSGPGEEEREEEEQQKLKEQHDIPASSLQSPDKDLGLESPLILSAQSSSPIMSEKS
KVESLLVSEGQFDKVQQADLTLKDSSACYEHTAAGLPSVSEGQWALDALRNLGLLKQLLV
QQLGFSEKGTLEERQRFPRFRTISQEAQTESGSEPGLQHSDNNKLHQPGTDRTLPRTNES
TASYDLRTSAESPAPGDAMQLVGRDPRSSSNSAIDRMSMNLEISATELEGVGADESGEHF
FDAREAHSDENPSESELMERKEEEDVQIRISGNYLILDGYGTVQESSTDEEVSSLVLQCS
AGGLTSLDSAQQQPLSPRDTQSDGGSSPFAEEVMASRWGGLEESCSFGASPHFSLESRRQ
VMQYIQKIEDDLEKLKEVEEDYTILRRQGLAGSASTGEHSDKS
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcacacagtccacaatcaccgacaggtttcctctcaaaaaaccgacaagacat
ggcagcattctgagcagagagtctccagctgacaagaagcagaaggtcgagcgctgcagc
agtacccacgactttgacccgacagatagctcctccaagaagacaaagtctagttcagag
gagagtagatccgagacgtatggtcttgttcaacgatgtgttgttatccaacgggatgaa
aacggatttgggctgacagttagcggagacaatccagtcttcgtgcagtccgtcaaagaa
gatggagcagcaatgcgggctggagtgcaaacaggtgatagaattatcaaggtgaatggc
actctggtaacacactcaaaccatttggaggtggtaaagctgatcaagtcgggttcctat
gtagctctaactgttcaggggcgcccgccggggtcgccccagattccattagctgattca
gaagtggatctggcagcgttcgggcatatgtctcccatcatgacatctccccattcgcct
ggcacatcgggaaacgcagaaaggatcactagcccagtgcttatgggggaggagaataat
attgtccacaaccagaaggtggagattctgagaaagatgctacagaaagagcaggaacgg
ctgcagtctctgcaagaagagtatagccggtcagccaccacgagactgctgaaggagata
caggaaacgaagaagcacattccgcagctgcaggagcagttgtccaaagccacaggctgc
actcaggatggagtcttatcctccaggtctgttacggagtcgctgcagatcagtgaagtg
gaggcagagagcagggattgtgagaacaaactggattacagtagcgacagcccttcccga
ccaaacagcgacattgctgatagtcctcgcagtgggttgaaggagcggatttatctggat
gagagcccagaaaagactgagattcaagatgctgattcccagtccattgttggaagtcct
ttatcccgagtggggcctcagatcattggagccgaggatgacgactttgacactgaacag
gagcagattaatggacaatgcagctgtttccagaacattgagctcctgaaatctcgccca
gctcacctggctgttcttttgcatcatgtggtgtcccagtttgaccccgcagcattgttg
tgctacctttacacggatttgtacaagcagaccaactccaaagagactcggcgtgtcttc
ctcgagttttaccagttcttcttggaccgagctgcaaatctaaaagttccagttccagat
gagatctccttagaactagacagaaggcggccagaactccttcctgaagagcttcatcgc
cagtttatacaaactatgcaagataaagtctgtccagaagttcaaaggaatctggaagat
ttcaggcagaaacgtagtatgggattgaccctggccgaaggagagctaaccaagctggat
gcagagagagttcgtgaccggaatgcggtggagaaggaaagagcatgtgcagaacagatt
attgctaaaatcgaggaagtcttgatgacgtctcagcctttggaagaagacaagagttcc
acaatgcaatatgtgattctgacttacatgaaacacctgggagtcaaagttaaagaacct
cgaaacctggagcagaagcgtggccggattggtttcttgccaaagatcaaggtacaaagt
atcaagaaggaaaaagaaggagaggaaaaaggaaaaagaagaggatttcctaacattctg
ggcccaccaagaagaccaagtcgacatgacagcagtgcaattggcagggccatggaaatg
cagaagccccgccatcccaagcactcacctacagcgtcttctgtgagcccagagccaccg
gattctagcaagatgcgccagagtgggtcctccagtgatggaacggatgcaccgtaccaa
cctgccaacccaatgtctcctttggcagtgggtcccttttcctctccagagggaagcaag
gacagcgaaacaggtttgaagcaggctggagatgctccacctgctaatgactgtgtggat
agcacaccccgcacgcctaataacacctttgagttcccatctccgttggaaaacttgcag
gaggaggagggagaatcggagagaatggttgacatgggaacaccaaagcctttccgcaag
atggacagcgttggtttcgcagatgtacaaagtgaagacgaactgtatgattttgacgtg
gacgtggaccctcccaactggcagcaacttgtgagccgagaagtgttgatgggattgaaa
ccctatgaaatcaaacgccaagaagtgattaatgaactgttttacactgagagagctcat
gtccgcacgctgaaggttctgcataatgtcttctaccagcgtgttacccgggaagggatc
ctcaactccagcgacaagcggaaaatcttttcaaatctggaggatatccttggtcttcat
gttgcattgaacgatcagatgaaaactgtccgaaaaaggaacgagacttctgtaattggc
caaattggggaggacttgctttcctggtttagtggaccagcggaggagaagctgaagcat
gcaactgccaccttctgcagtaaccagccctttgctctagaggtcatcaaatcacgccag
aagaaggactctcgcttccagacttttgtgcaggatgctgagagtaatccgctgtgtcgc
cggctgcagctgaaggatatcattcccaaggagatgcagaggttgacaaagtaccccctt
ctgctggataacattgcaaagtacacagaactgcctgaagagaaagagaaagtgaagaaa
gcagcagatcattgtcgtcagatccttaaccacgtgaaccaggctgtcaaagagtcggag
aacaagcagcatttggaagattatcagcgtcgtcttgacctgtcttacttgaagcagtct
gaggatcccatgatggatgagttcaggaacttggatttaacgaagagaaaaatgcttcac
gaaggacctctcatttggaaggttaatcgtgacaaaactatcgatctctacactctgctt
ctggaggacattctggttctgctgcagaaacaagatgataaactggtactgaagtgtcac
agtaagatcttggcatcaacagctgatagcaaacacaccttcagtccaatcatcaaactg
aacaccgttctggttcgtcaggtggcaacagataacaaagctttcttcgtcatctccatg
tcagaaaatggcgctcatatttatgaactggtggcacagactgtgtcagaaaagaatgtg
tggcaggatcttatagctcagatggcagggactgtaaaaatggggagcgctagaagagtg
attccgctgccgcagtcaggacctggcgaagaagagcgtgaagaagaggagcagcagaag
ctcaaagagcagcatgacattcctgccagtagtctacaaagtccagataaagatttgggc
ctcgaatctcccttaatactcagtgctcagtcgtcttcacccatcatgtctgaaaagtcc
aaggtggaaagtcttctcgtgtcagaaggacagtttgacaaagtgcagcaggcagacctg
acactgaaagattcttctgcatgctatgagcacacagccgccggtttaccctcggtatca
gaagggcagtgggcgttggatgcgttaaggaacttgggcctgctgaaacaattgttggta
cagcagcttggcttttctgagaagggaacccttgaagaacggcagcgctttcccaggttt
aggaccatatctcaagaagcccaaacggagagtgggagtgagcctggactacagcactct
gacaataacaaacttcaccagcctggaacagatagaacgcttccgcgaactaatgagtcc
acggctagttatgacctccggacttcggctgaatcgcccgctccaggggatgccatgcag
ctggtggggagagaccccaggtcaagtagtaactcagcaatagaccgcatgagtatgaat
ctggagatttcagccacggagctggaaggggtgggtgctgatgaaagcggggagcatttt
tttgatgctcgagaagctcacagtgatgaaaatccatctgaaagtgaactaatggaaagg
aaggaggaagaggatgtgcaaatacggatctcaggaaattatttgatccttgatggatat
ggaacagtgcaagagagctccacagacgaggaggtatcgtctctagttctccagtgctct
gccggtggcctcacctctttggactctgcccagcagcagccactttccccgcgggacacc
cagtcagatggaggaagctccccgtttgctgaggaggtgatggcctcgcgctggggggga
ctggaagagtcctgctcctttggagcaagccctcacttctctctggagtcacgccggcag
gtgatgcagtatattcagaagatagaggatgaccttgagaagttaaaggaggtggaggaa
gactacaccattctccgacgccaagggctggctggatcagcctccacgggagagcactca
gacaaaagctag
DBGET
integrated database retrieval system
