Cuculus canorus (common cuckoo): 104067273
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Entry
104067273 CDS
T08597
Symbol
PRDM11
Name
(RefSeq) PR domain-containing protein 11 isoform X1
KO
K24644
PR domain zinc finger protein 11 [EC:2.1.1.-]
Organism
cuca
Cuculus canorus (common cuckoo)
Brite
KEGG Orthology (KO) [BR:
cuca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cuca03000
]
104067273 (PRDM11)
Transcription factors [BR:
cuca03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
104067273 (PRDM11)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
SET
Zn_ribbon_PRDM4
Dimer_Tnp_hAT
DUF7822
DUF4954
Motif
Other DBs
NCBI-GeneID:
104067273
NCBI-ProteinID:
XP_053922877
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Position
5:49659684..49708494
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AA seq
1216 aa
AA seq
DB search
MSENLKDCLIQTQASLGEMVTIKTEACSPRRDQEYGQPCSGRPDPQSIEGEPKKLKGKRD
LIMTKSFQQVDFWFCESCQEYFVDECPNHGPPVFVSDTPVPIGIPDRAALTIPPGMEVVK
EPTGENDVRCMNEVIPKGHIFGPYEGQISSQDKSAGFFSWLIVDKNNRYKSIDGTDETKA
NWMRYLQNALHYPQDGALCHHSQMEFFAKQIYSPSGYVIISREEREQNLMAFQHSERIYF
RACRDIHPGEKLRVWYSEDYMKRLHSMSQETINRNLTSGDRKLQREKSEKNVENQEDMRG
ALQLATLKQGKSPYKRSYDEGESHPQTKKKKIDLIFKDVLEASLESAKFEENQLATTMPR
SIRKVSKYQAEDIFERCGSAMQHSSLNLSRNQSEGEWKVPSGSSFSSAKDLCILEDEEEE
LLSLKADSPTELSLASAQGNSHEIPTTSYCPNCIRLKKKIRELQAELDMLRSGKLPEPPV
LPPQVPELQEFSDPTASESIISIPTIMEDDDQEVDSADESVSNEMIAATDEPSKMSSATG
RRIRRFKQEWLKKFWFLRYSPTLNEMWCHVCRQYTVQSSRTSAFIIGSKQFKIHTIKLHS
QSNLHKKCLQLYKLRMHPEKTEEMCRNMTLLFNTAYHLALEGRPYYDFRPLAELLRKCEL
KVVDQYMNEGDCQILIHHIARALREDLVERIRQSPFLSIILDGQSDDLLADTVAVYVQYT
SSDGPPATEFLSLQELGFSTTDSYLQALDRAFSSLGIRLQDEKPTIGLGVDGANITASLR
ANLFMTIRKTLPWLLCLPFMVHRPHLEILDAISGKELPCLEELENNLKQLLSFYRYSPRL
MCELRVTAATLCEETEFLGDIRAVKWIIGEQNVLNALIKDYLEVVAHLKDVSGQTQRADA
SAIALALLQFLMDYQSIKLIYFLLDVIAVLSRLAYIFQGEYLLVSQVDDKIEEAIQEISR
LADSPGEYLQEFEENFRESFNGIAVKNLRVAEAKFQSIREKICQKTQVILAQRFDSRSRT
FVKACQVFDLAAWPRSTDELMSYGKEDMVQIFEHLETVPSFSREACREGMDTRGSLLMEW
RELKVDYYTKNGFKDLLSHICKYKQRFPLLNKIVQILKVLPTSSACCEKGRIALQRVRKN
NRSRLTLEQLSDLLTIAVNGPPIANFDCKRALDSWFEEKSGNSYALSAEMLSRMSSLDQK
PMLQSMDHGSEFYPDI
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaacttgaaggattgtttgatccagactcaggcttccttaggggagatggtt
acaataaaaacagaggcctgttctccacgccgggaccaggagtatggacagccttgctct
ggaaggcctgacccacagtccatagagggggagcccaagaaactgaaagggaaacgggat
ttgatcatgaccaagagctttcagcaagtggatttctggttctgtgagtcctgccaggag
tactttgtggatgaatgcccaaaccatggccctccagtgtttgtatctgacaccccagtg
cccatcggcattcctgaccgggcagcactgaccatcccgcctggaatggaggtggtgaaa
gagcccactggggagaacgatgtgcgctgtatgaatgaagtgatccccaaaggtcacatc
ttcggtccatacgaggggcagatctctagccaggacaagtctgcaggattcttctcatgg
ctgattgttgataagaacaaccgctacaaatccattgatggaacagatgaaaccaaagca
aactggatgagatatttgcaaaacgctttgcattatccccaagatggtgctctttgccat
cactcacagatggagttctttgcaaagcagatctactcaccctctgggtacgtgatcatc
tcccgggaggaaagggaacagaacctgatggctttccagcacagcgagaggatttacttc
cgtgcctgccgtgacatccaccctggggagaagctgcgggtctggtacagtgaggattat
atgaagcggttgcatagtatgtcccaggagaccatcaacagaaatctcacaagcggagac
agaaagttgcagagggaaaagtcagaaaagaatgtggaaaatcaagaggacatgaggggg
gcactccagcttgccactttaaagcaagggaagagcccctacaagcgcagctatgatgag
ggggaatcccacccccaaactaagaaaaaaaagattgatctcatcttcaaagatgtcctg
gaggcttccttggagtctgccaaatttgaagagaaccagttagcaacaactatgccacgt
tccatcagaaaagtatctaaataccaggctgaagacatctttgagaggtgtggtagtgcc
atgcagcacagctccctgaacctcagcagaaaccagagtgagggggaatggaaggtcccc
agtggttcctctttcagctcagcaaaagacttgtgcatccttgaagacgaggaagaagag
ctcctctcactcaaagcagacagcccaactgagctgtccctggcctctgctcaaggcaac
tcccacgaaatccctaccacctcctactgcccgaactgcatccgtctgaagaagaagatc
cgggaactgcaggctgagttagacatgctgagatctgggaagttacccgagccacctgtg
cttccgccccaggtacccgagctccaagagttctcagaccccacagcttcagaaagcatc
atctctattcctaccatcatggaggacgatgaccaagaggtggattctgctgatgaatct
gtttccaatgaaatgattgctgctacagatgagccttccaagatgtcttctgcgacgggc
cggaggatacgacggttcaaacaagagtggcttaaaaagttttggttcctgaggtactcc
ccgacattgaatgaaatgtggtgccatgtctgtagacagtacacagtgcaatcctctcgg
acttcagccttcatcattggctcaaagcagttcaagatacacacgataaagcttcacagc
cagagcaacctccacaaaaagtgcctgcagctttacaagctcaggatgcacccagagaag
acagaagagatgtgccgaaatatgaccctgctcttcaatacagcctaccacttggccctg
gagggcaggccctactatgactttcgtcctctggcagaactactgaggaagtgtgaactc
aaggtggtggatcagtacatgaatgagggagactgccagatcttaatccaccatatcgct
cgggctcttcgagaggacctagttgaacgcatccgacagtctcccttcctcagcatcatt
ctggacgggcagagcgatgacttacttgcagacacggttgcggtttatgtacagtacacg
agcagtgatgggcctccagcaaccgaattcctatctcttcaggaactgggcttttctaca
acagatagttacctccaagcattagacagggctttttccagcctgggaatacgactgcag
gatgagaagccaactattgggttgggagtcgatggtgctaacattactgccagcctgaga
gccaacttgtttatgacaatcagaaagaccttgccctggctgctctgcctgccctttatg
gtgcacaggccccatctcgaaatactggatgcaatcagtgggaaggaactgccatgcctg
gaggagctagaaaacaatttgaagcaactgctcagtttctatcgctactctccccgactc
atgtgcgagttgagggtcaccgctgccactctgtgtgaggagaccgagttcttgggggac
attcgagcagtgaagtggatcattggggaacagaatgtgctcaatgcactaatcaaagat
taccttgaggttgtggcccatctcaaagatgtcagtggccagacccaaagggcagatgct
tctgcaattgccttagccctcctgcagttcctgatggactaccagtcgattaaactcatc
tatttcctgctggatgtgattgctgtgctttcacgcctcgcctacatcttccaaggggag
taccttcttgtgtcgcaggtggatgataaaatagaggaggccatccaggagatcagtcgg
ctagcagactcgcctggggagtacttgcaggaatttgaggaaaacttccgtgaaagcttt
aacggcattgctgtgaaaaacctacgggtggctgaagccaaattccagtcaatcagagaa
aagatctgccagaagacccaggtgatcctagcccaaaggtttgattcccgtagccggaca
tttgtgaaggcctgtcaggtatttgaccttgcagcttggcccagaagcactgatgagctc
atgagctatggaaaggaggatatggtacaaatatttgaacatctggagacagtcccatca
ttttccagagaggcttgcagagaggggatggacactcgagggagtctgctgatggagtgg
cgagaactcaaggtggattattataccaaaaatggttttaaagacttgcttagtcacatt
tgtaaatacaaacagagattccccctcctaaataaaatagttcagatcctcaaagtcctt
cccacctcatcggcctgctgtgagaaggggcgcatcgccctgcagagagtgcgcaaaaac
aaccgctctcggctcacgctggagcagctcagtgatcttttgacgattgccgttaatggg
ccgcccattgccaattttgattgcaaaagggcgctagacagttggtttgaggagaagtca
ggcaatagttacgcactgtcagccgaaatgctgagcaggatgtcatctctcgatcagaag
ccgatgttgcagagcatggaccatggctctgagttttaccctgatatttag
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